Wall clock time and date at job start Mon Mar 30 2020 00:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46893 * 2 1 4 4 C 1.52997 * 109.46947 * 120.00079 * 2 1 3 5 5 C 1.50699 * 109.47215 * 175.00268 * 4 2 1 6 6 O 1.21290 * 119.99614 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00511 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00332 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47035 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.70145 * 60.68358 * 9 8 7 11 11 C 1.53626 * 109.66108 * 181.27373 * 9 8 7 12 12 C 1.53042 * 109.23733 * 174.54831 * 11 9 8 13 13 C 1.53041 * 109.54033 * 298.50501 * 12 11 9 14 14 C 1.53195 * 109.30745 * 61.36953 * 13 12 11 15 15 N 1.46928 * 109.58360 * 300.32266 * 9 8 7 16 16 C 1.36926 * 120.63278 * 6.62966 * 15 9 8 17 17 H 1.07997 * 120.00326 * 304.70956 * 16 15 9 18 18 C 1.38818 * 119.99918 * 124.70734 * 16 15 9 19 19 N 1.31616 * 119.99826 * 156.16327 * 18 16 15 20 20 Si 1.86795 * 120.00024 * 336.16572 * 18 16 15 21 21 H 1.48499 * 109.47375 * 275.67008 * 20 18 16 22 22 H 1.48503 * 109.47387 * 35.67385 * 20 18 16 23 23 H 1.48500 * 109.47223 * 155.67367 * 20 18 16 24 24 H 1.09000 * 109.47401 * 299.99712 * 1 2 3 25 25 H 1.09004 * 109.47421 * 60.00624 * 1 2 3 26 26 H 1.09009 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 239.99891 * 2 1 3 28 28 H 1.09006 * 109.47035 * 299.99658 * 3 2 1 29 29 H 1.09000 * 109.47370 * 60.00099 * 3 2 1 30 30 H 1.09000 * 109.47230 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47472 * 55.00411 * 4 2 1 32 32 H 1.09004 * 109.47101 * 294.99593 * 4 2 1 33 33 H 0.96998 * 119.99420 * 359.97438 * 7 5 4 34 34 H 1.08991 * 109.47394 * 59.99172 * 8 7 5 35 35 H 1.09004 * 109.46434 * 299.99411 * 8 7 5 36 36 H 1.08996 * 109.63746 * 54.55962 * 11 9 8 37 37 H 1.09004 * 109.46196 * 294.42941 * 11 9 8 38 38 H 1.09010 * 109.45761 * 178.48980 * 12 11 9 39 39 H 1.09000 * 109.45499 * 58.52650 * 12 11 9 40 40 H 1.08993 * 109.49841 * 301.42169 * 13 12 11 41 41 H 1.09000 * 109.49753 * 181.31491 * 13 12 11 42 42 H 1.08998 * 109.58549 * 185.57614 * 14 13 12 43 43 H 1.08999 * 109.70168 * 65.21960 * 14 13 12 44 44 H 0.97001 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1890 6 8 4.1449 -0.3747 0.2399 7 7 4.2148 -1.4322 2.1890 8 6 5.6749 -1.5368 2.1307 9 6 6.1849 -2.2581 3.3798 10 1 5.7623 -3.2619 3.4227 11 6 7.7183 -2.3420 3.3385 12 6 8.2261 -2.9416 4.6518 13 6 7.8251 -2.0346 5.8174 14 6 6.2973 -1.9438 5.8862 15 7 5.7903 -1.5058 4.5786 16 6 4.9611 -0.4206 4.4797 17 1 5.2202 0.3992 3.8261 18 6 3.7875 -0.3741 5.2195 19 7 3.2370 0.7861 5.5081 20 14 2.9895 -1.9581 5.8055 21 1 2.1350 -2.5114 4.7244 22 1 4.0438 -2.9433 6.1563 23 1 2.1551 -1.6790 7.0019 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.7324 -1.7961 2.9478 34 1 6.1092 -0.5381 2.0854 35 1 5.9636 -2.0991 1.2426 36 1 8.1364 -1.3439 3.2086 37 1 8.0250 -2.9761 2.5065 38 1 9.3122 -3.0277 4.6157 39 1 7.7881 -3.9297 4.7931 40 1 8.2421 -1.0393 5.6641 41 1 8.2071 -2.4501 6.7499 42 1 6.0082 -1.2224 6.6505 43 1 5.8818 -2.9214 6.1305 44 1 2.4171 0.8186 6.0254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265638725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:12 Heat of formation + Delta-G solvation = -43.124239 kcal Electronic energy + Delta-G solvation = -22198.030197 eV Core-core repulsion = 19149.863694 eV Total energy + Delta-G solvation = -3048.166503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.27391 -37.93335 -35.29654 -34.00690 -32.96234 -30.98830 -30.68865 -28.01225 -26.77321 -25.86091 -24.30821 -22.33295 -20.96615 -20.24816 -19.59314 -19.03009 -16.81333 -16.17374 -15.52216 -15.26067 -15.02996 -14.53760 -13.92269 -13.84197 -13.57119 -13.47892 -13.20028 -13.03252 -12.58788 -12.33169 -12.10761 -11.92912 -11.79658 -11.50735 -11.45675 -11.21025 -10.84240 -10.77238 -10.69161 -10.53393 -10.43761 -10.33454 -10.17489 -9.87343 -9.78508 -9.57486 -8.96940 -8.57827 -8.08838 -6.53031 -6.13305 -3.71068 3.18924 3.34438 3.39053 3.42094 4.04505 4.40463 4.87964 5.14036 5.15106 5.24329 5.29866 5.39084 5.47406 5.51679 5.71655 5.81588 5.84184 5.91310 5.97320 5.99759 6.03723 6.11490 6.19441 6.20036 6.25154 6.28739 6.30420 6.44631 6.47333 6.51393 6.52707 6.63518 6.70192 6.82863 6.85986 6.86757 7.05811 7.34362 7.98950 8.40746 8.48019 8.92274 9.05230 9.55621 10.12711 10.99358 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.007048 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.049140 B = 3971.591165 C = 4851.504273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.140 4.140 5 C 0.512 3.488 6 O -0.564 6.564 7 N -0.693 5.693 8 C 0.140 3.860 9 C 0.152 3.848 10 H 0.032 0.968 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.137 4.137 14 C 0.141 3.859 15 N -0.600 5.600 16 C -0.268 4.268 17 H 0.070 0.930 18 C 0.055 3.945 19 N -0.883 5.883 20 Si 0.841 3.159 21 H -0.283 1.283 22 H -0.255 1.255 23 H -0.294 1.294 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.405 0.595 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.024 0.976 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -6.258 -4.758 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.209 4.209 4 C -0.180 4.180 5 C 0.298 3.702 6 O -0.445 6.445 7 N -0.343 5.343 8 C 0.016 3.984 9 C 0.046 3.954 10 H 0.050 0.950 11 C -0.166 4.166 12 C -0.146 4.146 13 C -0.176 4.176 14 C 0.016 3.984 15 N -0.325 5.325 16 C -0.397 4.397 17 H 0.088 0.912 18 C -0.149 4.149 19 N -0.522 5.522 20 Si 0.668 3.332 21 H -0.209 1.209 22 H -0.180 1.180 23 H -0.221 1.221 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.732 -5.821 -5.322 7.921 hybrid contribution -0.845 -0.982 1.008 1.641 sum -0.112 -6.803 -4.314 8.056 Atomic orbital electron populations 1.21873 0.95609 1.01299 1.01692 1.20794 0.94437 0.97069 0.97186 1.21935 1.03523 0.94880 1.00512 1.21748 0.93120 1.02231 1.00875 1.20465 0.89846 0.77651 0.82206 1.90572 1.70626 1.48971 1.34363 1.45960 1.07586 1.58140 1.22580 1.21147 0.80642 1.00728 0.95904 1.21035 0.92462 0.94007 0.87870 0.95023 1.21981 0.97133 1.00859 0.96609 1.21366 0.99009 0.98656 0.95555 1.22028 0.99268 0.99524 0.96750 1.21349 0.90573 0.97762 0.88742 1.44307 1.55184 1.32781 1.00260 1.18524 0.98734 0.95069 1.27384 0.91213 1.25914 0.96489 0.95520 0.96944 1.69919 1.20573 1.24060 1.37612 0.87417 0.80486 0.86900 0.78371 1.20938 1.17990 1.22090 0.92603 0.92793 0.93036 0.90915 0.93659 0.93196 0.90433 0.89996 0.88604 0.75781 0.91497 0.92883 0.91747 0.92846 0.93275 0.92888 0.92080 0.93272 0.91737 0.95808 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.08 -1.16 2.57 -90.62 -0.23 -1.40 16 3 C -0.15 -2.47 8.93 37.16 0.33 -2.14 16 4 C -0.14 -2.38 5.17 -27.89 -0.14 -2.53 16 5 C 0.51 10.29 7.55 -10.99 -0.08 10.20 16 6 O -0.56 -12.44 13.97 5.55 0.08 -12.36 16 7 N -0.69 -14.09 4.15 -60.30 -0.25 -14.34 16 8 C 0.14 2.71 4.55 -4.04 -0.02 2.70 16 9 C 0.15 2.85 3.04 -67.37 -0.20 2.65 16 10 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 11 C -0.13 -2.02 5.40 -26.38 -0.14 -2.16 16 12 C -0.11 -1.62 5.88 -26.69 -0.16 -1.78 16 13 C -0.14 -2.28 6.08 -26.61 -0.16 -2.44 16 14 C 0.14 2.83 4.70 -3.71 -0.02 2.82 16 15 N -0.60 -12.97 2.16 -164.52 -0.35 -13.32 16 16 C -0.27 -6.75 6.36 -15.06 -0.10 -6.85 16 17 H 0.07 2.02 7.40 -52.49 -0.39 1.63 16 18 C 0.05 1.42 5.02 -17.43 -0.09 1.33 16 19 N -0.88 -24.82 13.97 55.49 0.78 -24.05 16 20 Si 0.84 19.44 26.35 -169.99 -4.48 14.96 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.26 -5.70 5.08 56.52 0.29 -5.41 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 33 H 0.41 8.52 5.75 -40.82 -0.23 8.29 16 34 H 0.07 1.44 7.57 -51.93 -0.39 1.05 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.40 7.73 -51.93 -0.40 1.00 16 43 H 0.02 0.48 6.54 -51.93 -0.34 0.14 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -27.90 333.68 -7.95 -35.85 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -8.07 Total: 9.34 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.67 Total: -1.10 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.17 Total: -51.71 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.48 Total: 14.96 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.90 -7.95 -35.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265638725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.278 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds