Wall clock time and date at job start Mon Mar 30 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46893 * 2 1 4 4 C 1.52997 * 109.46947 * 120.00079 * 2 1 3 5 5 C 1.50699 * 109.47215 * 175.00268 * 4 2 1 6 6 O 1.21290 * 119.99614 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00511 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00332 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47035 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.70145 * 60.68358 * 9 8 7 11 11 C 1.53626 * 109.66108 * 181.27373 * 9 8 7 12 12 C 1.53042 * 109.23733 * 174.54831 * 11 9 8 13 13 C 1.53041 * 109.54033 * 298.50501 * 12 11 9 14 14 C 1.53195 * 109.30745 * 61.36953 * 13 12 11 15 15 N 1.46928 * 109.58360 * 300.32266 * 9 8 7 16 16 C 1.36926 * 120.63278 * 6.62966 * 15 9 8 17 17 H 1.07997 * 120.00326 * 304.70956 * 16 15 9 18 18 C 1.38818 * 119.99918 * 124.70734 * 16 15 9 19 19 N 1.31616 * 119.99826 * 156.16327 * 18 16 15 20 20 Si 1.86795 * 120.00024 * 336.16572 * 18 16 15 21 21 H 1.48499 * 109.47375 * 275.67008 * 20 18 16 22 22 H 1.48503 * 109.47387 * 35.67385 * 20 18 16 23 23 H 1.48500 * 109.47223 * 155.67367 * 20 18 16 24 24 H 1.09000 * 109.47401 * 299.99712 * 1 2 3 25 25 H 1.09004 * 109.47421 * 60.00624 * 1 2 3 26 26 H 1.09009 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47032 * 239.99891 * 2 1 3 28 28 H 1.09006 * 109.47035 * 299.99658 * 3 2 1 29 29 H 1.09000 * 109.47370 * 60.00099 * 3 2 1 30 30 H 1.09000 * 109.47230 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47472 * 55.00411 * 4 2 1 32 32 H 1.09004 * 109.47101 * 294.99593 * 4 2 1 33 33 H 0.96998 * 119.99420 * 359.97438 * 7 5 4 34 34 H 1.08991 * 109.47394 * 59.99172 * 8 7 5 35 35 H 1.09004 * 109.46434 * 299.99411 * 8 7 5 36 36 H 1.08996 * 109.63746 * 54.55962 * 11 9 8 37 37 H 1.09004 * 109.46196 * 294.42941 * 11 9 8 38 38 H 1.09010 * 109.45761 * 178.48980 * 12 11 9 39 39 H 1.09000 * 109.45499 * 58.52650 * 12 11 9 40 40 H 1.08993 * 109.49841 * 301.42169 * 13 12 11 41 41 H 1.09000 * 109.49753 * 181.31491 * 13 12 11 42 42 H 1.08998 * 109.58549 * 185.57614 * 14 13 12 43 43 H 1.08999 * 109.70168 * 65.21960 * 14 13 12 44 44 H 0.97001 * 120.00125 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1890 6 8 4.1449 -0.3747 0.2399 7 7 4.2148 -1.4322 2.1890 8 6 5.6749 -1.5368 2.1307 9 6 6.1849 -2.2581 3.3798 10 1 5.7623 -3.2619 3.4227 11 6 7.7183 -2.3420 3.3385 12 6 8.2261 -2.9416 4.6518 13 6 7.8251 -2.0346 5.8174 14 6 6.2973 -1.9438 5.8862 15 7 5.7903 -1.5058 4.5786 16 6 4.9611 -0.4206 4.4797 17 1 5.2202 0.3992 3.8261 18 6 3.7875 -0.3741 5.2195 19 7 3.2370 0.7861 5.5081 20 14 2.9895 -1.9581 5.8055 21 1 2.1350 -2.5114 4.7244 22 1 4.0438 -2.9433 6.1563 23 1 2.1551 -1.6790 7.0019 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.7324 -1.7961 2.9478 34 1 6.1092 -0.5381 2.0854 35 1 5.9636 -2.0991 1.2426 36 1 8.1364 -1.3439 3.2086 37 1 8.0250 -2.9761 2.5065 38 1 9.3122 -3.0277 4.6157 39 1 7.7881 -3.9297 4.7931 40 1 8.2421 -1.0393 5.6641 41 1 8.2071 -2.4501 6.7499 42 1 6.0082 -1.2224 6.6505 43 1 5.8818 -2.9214 6.1305 44 1 2.4171 0.8186 6.0254 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265638725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:11 Heat of formation + Delta-G solvation = -59.342042 kcal Electronic energy + Delta-G solvation = -22198.733454 eV Core-core repulsion = 19149.863694 eV Total energy + Delta-G solvation = -3048.869760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86265 -39.46960 -36.61528 -35.57296 -34.79573 -32.66998 -32.28049 -29.40246 -27.95704 -27.50146 -25.94843 -23.92866 -22.42797 -21.77422 -21.01314 -20.54347 -18.56976 -17.82994 -17.14828 -16.82749 -16.68084 -16.06797 -15.40092 -15.37242 -14.98013 -14.80627 -14.68901 -14.60019 -14.36235 -13.83642 -13.59769 -13.29620 -13.11051 -13.00854 -12.77831 -12.65898 -12.64543 -12.39642 -12.08658 -12.02000 -11.74611 -11.64725 -11.58700 -11.50429 -11.26097 -11.14278 -10.56395 -10.53881 -9.76760 -8.35029 -8.14117 -5.73253 1.34924 1.44533 1.53847 1.80601 2.46252 2.52301 3.04742 3.38214 3.85320 3.95095 3.97367 4.02834 4.15394 4.21280 4.37381 4.39246 4.50954 4.57500 4.66468 4.70399 4.73872 4.77609 4.79555 4.84072 4.95907 5.03396 5.06491 5.09784 5.11800 5.21529 5.25272 5.30975 5.35336 5.37174 5.46812 5.51225 5.64860 5.75011 6.00665 6.38797 6.77110 7.09614 7.43363 7.61084 8.19957 9.00421 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.007048 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.049140 B = 3971.591165 C = 4851.504273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.137 4.137 5 C 0.503 3.497 6 O -0.588 6.588 7 N -0.697 5.697 8 C 0.142 3.858 9 C 0.151 3.849 10 H 0.049 0.951 11 C -0.122 4.122 12 C -0.103 4.103 13 C -0.131 4.131 14 C 0.137 3.863 15 N -0.610 5.610 16 C -0.246 4.246 17 H 0.017 0.983 18 C 0.013 3.987 19 N -0.934 5.934 20 Si 0.899 3.101 21 H -0.266 1.266 22 H -0.238 1.238 23 H -0.307 1.307 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.033 0.967 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -9.250 -5.110 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.291 3.709 6 O -0.471 6.471 7 N -0.346 5.346 8 C 0.018 3.982 9 C 0.046 3.954 10 H 0.066 0.934 11 C -0.162 4.162 12 C -0.141 4.141 13 C -0.170 4.170 14 C 0.012 3.988 15 N -0.337 5.337 16 C -0.376 4.376 17 H 0.034 0.966 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.724 3.276 21 H -0.192 1.192 22 H -0.162 1.162 23 H -0.235 1.235 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.834 -8.849 -5.685 10.551 hybrid contribution -0.760 0.033 1.091 1.330 sum 0.074 -8.816 -4.594 9.941 Atomic orbital electron populations 1.21821 0.92906 1.02673 1.02406 1.20812 0.96585 0.95731 0.96113 1.21891 1.01246 0.96276 1.01223 1.21812 0.90885 1.03806 1.01150 1.21077 0.91244 0.76890 0.81727 1.90555 1.71471 1.49729 1.35306 1.46051 1.07987 1.58132 1.22455 1.21167 0.80284 0.99304 0.97453 1.21198 0.94586 0.93770 0.85828 0.93378 1.21951 0.94586 1.00869 0.98750 1.21364 1.00773 0.98400 0.93528 1.21941 0.96291 0.99555 0.99169 1.21385 0.93202 0.97102 0.87105 1.44388 1.54999 1.32296 1.01974 1.18057 0.99154 0.94731 1.25665 0.96552 1.26355 0.96864 0.97935 0.97516 1.70049 1.21319 1.26428 1.39760 0.86496 0.79865 0.83476 0.77743 1.19158 1.16191 1.23490 0.92875 0.91129 0.91349 0.90991 0.91403 0.94005 0.93853 0.87279 0.90121 0.76132 0.94879 0.90866 0.93403 0.89846 0.90569 0.91519 0.93718 0.90643 0.94378 0.94888 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.19 71.98 0.66 -2.54 16 2 C -0.07 -2.19 2.57 -10.80 -0.03 -2.22 16 3 C -0.15 -4.93 8.93 71.98 0.64 -4.29 16 4 C -0.14 -4.61 5.17 29.85 0.15 -4.46 16 5 C 0.50 20.52 7.55 87.66 0.66 21.19 16 6 O -0.59 -26.60 13.97 -3.06 -0.04 -26.65 16 7 N -0.70 -28.56 4.15 -463.06 -1.92 -30.48 16 8 C 0.14 5.53 4.55 86.38 0.39 5.92 16 9 C 0.15 5.43 3.04 45.12 0.14 5.56 16 10 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 11 C -0.12 -3.59 5.40 30.82 0.17 -3.43 16 12 C -0.10 -2.69 5.88 30.62 0.18 -2.51 16 13 C -0.13 -4.04 6.08 30.67 0.19 -3.86 16 14 C 0.14 5.31 4.70 86.36 0.41 5.71 16 15 N -0.61 -26.19 2.16 -674.42 -1.45 -27.65 16 16 C -0.25 -12.81 6.36 84.04 0.53 -12.27 16 17 H 0.02 1.04 7.40 -2.91 -0.02 1.02 16 18 C 0.01 0.67 5.02 84.86 0.43 1.10 16 19 N -0.93 -54.70 13.97 21.65 0.30 -54.40 16 20 Si 0.90 40.01 26.35 68.60 1.81 41.82 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.24 -9.84 5.08 99.48 0.51 -9.33 16 23 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 2.17 7.95 -2.39 -0.02 2.15 16 28 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.72 5.95 -2.39 -0.01 1.70 16 31 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.40 16.77 5.75 -92.71 -0.53 16.23 16 34 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 1.65 7.73 -2.39 -0.02 1.63 16 43 H 0.03 1.24 6.54 -2.39 -0.02 1.22 16 44 H 0.26 14.69 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -63.38 333.68 3.43 -59.95 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.22 Total: 33.49 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.52 Total: 3.91 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -3.07 Total: -112.53 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.04 Total: -26.65 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.81 Total: 41.82 kcal Total: -63.38 3.43 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265638725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.610 kcal (2) G-P(sol) polarization free energy of solvation -63.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds