Wall clock time and date at job start Mon Mar 30 2020 00:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47078 * 2 1 4 4 C 1.52997 * 109.46811 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.46955 * 180.02562 * 4 3 2 6 6 O 1.21278 * 120.00216 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99788 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.63374 * 5.38796 * 7 5 4 9 9 C 1.53194 * 108.77356 * 233.59086 * 8 7 5 10 10 C 1.53041 * 109.31354 * 305.36329 * 9 8 7 11 11 C 1.53037 * 109.53699 * 61.36635 * 10 9 8 12 12 C 1.46930 * 120.62759 * 185.36941 * 7 5 4 13 13 H 1.09002 * 109.58636 * 246.34125 * 12 7 5 14 14 C 1.53001 * 109.58820 * 6.62154 * 12 7 5 15 15 N 1.46490 * 109.47286 * 178.20145 * 14 12 7 16 16 C 1.36942 * 120.00098 * 185.32273 * 15 14 12 17 17 H 1.07996 * 120.00022 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99855 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00161 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99579 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46915 * 90.00600 * 20 18 16 22 22 H 1.48506 * 109.46964 * 210.00241 * 20 18 16 23 23 H 1.48496 * 109.47859 * 330.00180 * 20 18 16 24 24 H 1.08996 * 109.47477 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47372 * 300.00245 * 1 2 3 26 26 H 1.08999 * 109.47192 * 59.99919 * 1 2 3 27 27 H 1.09001 * 109.46866 * 239.99849 * 2 1 3 28 28 H 1.09006 * 109.46633 * 119.99758 * 2 1 3 29 29 H 1.09004 * 109.46911 * 60.00324 * 3 2 1 30 30 H 1.08999 * 109.47175 * 300.00091 * 3 2 1 31 31 H 1.09002 * 109.47419 * 60.00482 * 4 3 2 32 32 H 1.08999 * 109.47530 * 300.00125 * 4 3 2 33 33 H 1.09004 * 109.58661 * 353.37421 * 8 7 5 34 34 H 1.08996 * 109.58865 * 113.65798 * 8 7 5 35 35 H 1.09003 * 109.49714 * 65.31732 * 9 8 7 36 36 H 1.09002 * 109.49728 * 185.38142 * 9 8 7 37 37 H 1.09000 * 109.45962 * 181.38988 * 10 9 8 38 38 H 1.09001 * 109.45530 * 301.36035 * 10 9 8 39 39 H 1.09001 * 109.49742 * 178.67996 * 11 10 9 40 40 H 1.09005 * 109.49836 * 58.58717 * 11 10 9 41 41 H 1.09007 * 109.46930 * 58.19879 * 14 12 7 42 42 H 1.09004 * 109.47270 * 298.20249 * 14 12 7 43 43 H 0.96998 * 120.00207 * 5.32161 * 15 14 12 44 44 H 0.96997 * 119.99761 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0723 2.8633 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 6.3634 2.0089 -0.1178 9 6 7.3561 2.0959 1.0457 10 6 7.9898 3.4888 1.0673 11 6 6.9013 4.5431 1.2812 12 6 5.9034 4.4838 0.1203 13 1 6.4000 4.7718 -0.8063 14 6 4.7389 5.4371 0.3958 15 7 5.2511 6.8001 0.5565 16 6 4.4028 7.8120 0.9194 17 1 3.3562 7.6052 1.0875 18 6 4.8884 9.1035 1.0722 19 7 6.1639 9.3556 0.8678 20 14 3.7310 10.4839 1.5665 21 1 3.6910 10.5899 3.0472 22 1 4.2145 11.7650 0.9914 23 1 2.3677 10.1946 1.0538 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.8372 1.0550 -0.0786 34 1 6.8979 2.0927 -1.0640 35 1 6.8318 1.9201 1.9851 36 1 8.1343 1.3437 0.9171 37 1 8.7147 3.5454 1.8793 38 1 8.4926 3.6736 0.1180 39 1 7.3561 5.5329 1.3198 40 1 6.3813 4.3443 2.2184 41 1 4.2271 5.1313 1.3083 42 1 4.0398 5.4079 -0.4401 43 1 6.1911 6.9859 0.4059 44 1 6.5030 10.2581 0.9742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265662810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:50 Heat of formation + Delta-G solvation = -56.535332 kcal Electronic energy + Delta-G solvation = -21394.818028 eV Core-core repulsion = 18346.069976 eV Total energy + Delta-G solvation = -3048.748052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55425 -38.58001 -36.72759 -36.14484 -34.02421 -33.71040 -31.69705 -30.94821 -27.83625 -26.21349 -25.18505 -24.66512 -22.68112 -21.98691 -21.50053 -19.99547 -19.10687 -17.84141 -17.20048 -16.78574 -16.43822 -15.94280 -15.51480 -15.27639 -15.15720 -14.91692 -14.83797 -14.45540 -14.30602 -14.15154 -13.52032 -13.50019 -13.16623 -13.05547 -12.85408 -12.69965 -12.21629 -12.17284 -12.10023 -12.05643 -11.94144 -11.83162 -11.78702 -11.56339 -11.42106 -11.37089 -11.01490 -10.11544 -9.55150 -8.96611 -7.98300 -5.26384 1.42114 1.45005 1.54213 1.72125 2.01544 2.54582 3.34189 3.54515 3.84335 3.86944 3.95840 3.99436 4.08662 4.13600 4.15899 4.28744 4.36705 4.44430 4.49118 4.60617 4.64214 4.70708 4.77740 4.87209 4.95413 4.98312 5.03736 5.06740 5.12776 5.13540 5.19978 5.26631 5.30883 5.33603 5.41641 5.43632 5.48259 5.53086 5.71174 6.24678 6.55274 7.29997 7.32235 8.05098 8.32800 9.25371 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.005112 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.853019 B = 5475.882805 C = 7057.892571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.106 4.106 4 C -0.125 4.125 5 C 0.491 3.509 6 O -0.578 6.578 7 N -0.608 5.608 8 C 0.101 3.899 9 C -0.128 4.128 10 C -0.116 4.116 11 C -0.117 4.117 12 C 0.148 3.852 13 H 0.065 0.935 14 C 0.175 3.825 15 N -0.745 5.745 16 C -0.246 4.246 17 H 0.060 0.940 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.975 3.025 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.003 0.997 42 H 0.025 0.975 43 H 0.373 0.627 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -25.687 -1.983 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.144 4.144 4 C -0.164 4.164 5 C 0.282 3.718 6 O -0.457 6.457 7 N -0.342 5.342 8 C -0.020 4.020 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.156 4.156 12 C 0.043 3.957 13 H 0.083 0.917 14 C 0.049 3.951 15 N -0.390 5.390 16 C -0.378 4.378 17 H 0.078 0.922 18 C -0.263 4.263 19 N -0.618 5.618 20 Si 0.803 3.197 21 H -0.210 1.210 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.043 0.957 43 H 0.206 0.794 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.056 -25.176 -1.954 25.251 hybrid contribution -0.306 1.709 0.313 1.764 sum -0.250 -23.467 -1.642 23.526 Atomic orbital electron populations 1.21799 0.96156 1.02104 1.01355 1.21498 0.95780 0.94710 1.03275 1.21360 0.93674 0.97865 1.01502 1.21772 0.97107 0.91074 1.06493 1.21766 0.81749 0.93225 0.75099 1.90801 1.56765 1.47151 1.50974 1.48352 1.06195 1.07184 1.72478 1.22137 0.90762 0.89518 0.99595 1.21922 0.99175 0.96965 0.98533 1.21538 0.96632 0.94376 1.02768 1.21786 0.96875 1.00060 0.96887 1.21189 0.94417 0.81739 0.98314 0.91727 1.21109 0.93355 0.83149 0.97488 1.42721 1.08765 1.04099 1.83447 1.19505 0.91759 0.88973 1.37518 0.92183 1.25530 0.97876 0.99554 1.03383 1.69802 1.13846 1.20430 1.57696 0.85128 0.78103 0.78630 0.77835 1.21027 1.21271 1.20149 0.91296 0.93611 0.93393 0.90338 0.90630 0.93835 0.93401 0.85971 0.86452 0.86242 0.89994 0.91923 0.87308 0.90803 0.91142 0.92842 0.93525 0.97881 0.95692 0.79432 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -1.62 5.93 30.59 0.18 -1.44 16 3 C -0.11 -2.26 4.50 30.59 0.14 -2.12 16 4 C -0.13 -2.28 4.05 29.85 0.12 -2.16 16 5 C 0.49 15.10 7.53 87.66 0.66 15.76 16 6 O -0.58 -24.71 11.53 -3.02 -0.03 -24.74 16 7 N -0.61 -17.06 2.97 -795.01 -2.36 -19.42 16 8 C 0.10 1.61 6.35 86.36 0.55 2.16 16 9 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16 10 C -0.12 -2.57 5.88 30.62 0.18 -2.39 16 11 C -0.12 -3.96 5.10 30.67 0.16 -3.81 16 12 C 0.15 5.45 3.06 44.97 0.14 5.59 16 13 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.17 8.68 4.14 86.38 0.36 9.04 16 15 N -0.75 -42.91 5.27 -343.45 -1.81 -44.72 16 16 C -0.25 -15.43 9.99 84.03 0.84 -14.59 16 17 H 0.06 3.80 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 19 N -0.97 -61.91 13.06 21.65 0.28 -61.62 16 20 Si 0.97 49.48 29.55 68.60 2.03 51.51 16 21 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.04 1.14 8.10 -2.38 -0.02 1.12 16 30 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 31 H 0.12 1.44 7.72 -2.39 -0.02 1.42 16 32 H 0.12 1.53 7.91 -2.39 -0.02 1.51 16 33 H 0.12 1.06 5.93 -2.38 -0.01 1.05 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 2.12 7.10 -2.39 -0.02 2.10 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.00 0.17 7.24 -2.38 -0.02 0.15 16 42 H 0.03 1.39 6.24 -2.38 -0.01 1.37 16 43 H 0.37 21.84 6.68 -92.71 -0.62 21.22 16 44 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -79.36 340.60 3.13 -76.24 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.34 Total: 24.10 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 4.69 Total: -1.35 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -3.89 Total: -125.76 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.03 Total: -24.74 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.03 Total: 51.51 kcal Total: -79.36 3.13 -76.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265662810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.703 kcal (2) G-P(sol) polarization free energy of solvation -79.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds