Wall clock time and date at job start Mon Mar 30 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47494 * 2 1 4 4 C 1.53001 * 109.47193 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47064 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99743 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99964 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00146 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46790 * 35.00133 * 8 7 5 10 10 C 1.52996 * 109.47433 * 275.00199 * 8 7 5 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46925 * 59.99873 * 11 10 8 13 13 C 1.52996 * 109.47389 * 299.99590 * 12 11 10 14 14 H 1.08999 * 109.47454 * 300.00556 * 13 12 11 15 15 N 1.46499 * 109.47169 * 180.02562 * 13 12 11 16 16 C 1.36931 * 120.00122 * 85.00412 * 15 13 12 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71949 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72145 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72253 * 20 18 16 24 24 C 1.53005 * 109.47072 * 154.99894 * 8 7 5 25 25 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47266 * 300.00174 * 1 2 3 27 27 H 1.08997 * 109.47225 * 59.99774 * 1 2 3 28 28 H 1.09003 * 109.47266 * 239.99826 * 2 1 3 29 29 H 1.09004 * 109.46879 * 120.00127 * 2 1 3 30 30 H 1.08997 * 109.46803 * 60.00060 * 3 2 1 31 31 H 1.08997 * 109.47069 * 300.00321 * 3 2 1 32 32 H 1.09007 * 109.46953 * 59.99801 * 4 3 2 33 33 H 1.09004 * 109.47023 * 300.00030 * 4 3 2 34 34 H 0.97006 * 120.00284 * 0.02562 * 7 5 4 35 35 H 1.09005 * 109.46772 * 59.99649 * 10 8 7 36 36 H 1.08999 * 109.47079 * 299.99758 * 10 8 7 37 37 H 1.08999 * 109.46935 * 299.99919 * 11 10 8 38 38 H 1.08995 * 109.47084 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.46971 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47276 * 60.00256 * 12 11 10 41 41 H 0.97001 * 119.99790 * 264.99929 * 15 13 12 42 42 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47117 * 60.00440 * 24 8 7 44 44 H 1.09002 * 109.47054 * 299.99825 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 8 3.2843 3.7850 -0.0008 7 7 5.3975 3.1094 -0.0014 8 6 5.8859 4.4906 -0.0026 9 1 5.2133 5.1142 0.5863 10 6 5.9375 5.0121 -1.4400 11 6 6.4470 6.4548 -1.4411 12 6 7.8494 6.5008 -0.8312 13 6 7.7978 5.9794 0.6062 14 1 7.1249 6.6028 1.1950 15 7 9.1406 6.0240 1.1904 16 6 9.5991 7.1792 1.7652 17 1 8.9707 8.0573 1.7882 18 6 10.8716 7.2217 2.3182 19 7 11.6372 6.1514 2.2906 20 14 11.4941 8.7953 3.1092 21 1 12.1866 9.6220 2.0883 22 1 10.3475 9.5560 3.6675 23 1 12.4433 8.4589 4.2006 24 6 7.2885 4.5360 0.6072 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9286 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 6.0278 2.3721 -0.0014 35 1 4.9382 4.9796 -1.8743 36 1 6.6101 4.3884 -2.0288 37 1 5.7741 7.0782 -0.8524 38 1 6.4833 6.8265 -2.4651 39 1 8.2122 7.5287 -0.8316 40 1 8.5223 5.8774 -1.4200 41 1 9.7047 5.2353 1.1701 42 1 12.5263 6.1810 2.6774 43 1 7.9610 3.9124 0.0183 44 1 7.2517 4.1646 1.6313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266048587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:28 Heat of formation + Delta-G solvation = -68.363135 kcal Electronic energy + Delta-G solvation = -20531.366850 eV Core-core repulsion = 17482.105906 eV Total energy + Delta-G solvation = -3049.260944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.98783 -38.03054 -35.58526 -34.60728 -33.31555 -31.16254 -30.90468 -29.11448 -27.74845 -24.90599 -23.70141 -22.05200 -21.57097 -20.92149 -20.24300 -19.33036 -17.27677 -16.69585 -16.19336 -16.12161 -14.87851 -14.67919 -14.38679 -13.99589 -13.87224 -13.81633 -13.55146 -13.15863 -13.02142 -12.64289 -12.53914 -12.13828 -12.04214 -11.55682 -11.44113 -11.24281 -10.99552 -10.91583 -10.86888 -10.82344 -10.71533 -10.33824 -10.26238 -10.16681 -10.01894 -9.68028 -9.51766 -8.94272 -8.85054 -6.96130 -5.76965 -3.05448 2.67760 3.21135 3.43716 3.49207 3.50572 4.56790 4.58560 4.62629 4.69332 4.95628 5.03032 5.05827 5.13393 5.24586 5.34058 5.43524 5.51296 5.56480 5.57464 5.62721 5.67480 5.70415 5.77790 5.87514 5.89267 5.98591 6.01170 6.04576 6.13844 6.15448 6.32138 6.36479 6.53129 6.56277 6.66133 6.74125 6.97522 7.13121 7.56660 7.70962 8.27946 8.41895 9.53005 10.10395 10.45239 11.45815 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.003097 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.983140 B = 9038.785544 C = 9397.601583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.142 4.142 5 C 0.510 3.490 6 O -0.544 6.544 7 N -0.726 5.726 8 C 0.147 3.853 9 H 0.086 0.914 10 C -0.123 4.123 11 C -0.115 4.115 12 C -0.136 4.136 13 C 0.183 3.817 14 H 0.048 0.952 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.071 0.929 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.292 1.292 24 C -0.129 4.129 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.064 0.936 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 -12.229 -7.063 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.182 4.182 5 C 0.296 3.704 6 O -0.421 6.421 7 N -0.376 5.376 8 C 0.043 3.957 9 H 0.104 0.896 10 C -0.162 4.162 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.066 0.934 15 N -0.365 5.365 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.208 1.208 23 H -0.218 1.218 24 C -0.168 4.168 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.216 0.784 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.340 -11.390 -6.947 21.878 hybrid contribution 1.083 0.208 0.362 1.161 sum -16.257 -11.182 -6.584 20.801 Atomic orbital electron populations 1.21761 0.95772 1.01449 1.02040 1.21555 0.96096 0.96708 1.01939 1.21367 0.92834 0.96447 1.03623 1.21718 0.98086 0.94161 1.04264 1.20728 0.82359 0.91612 0.75704 1.90696 1.55314 1.46575 1.49532 1.46223 1.06943 1.09309 1.75145 1.21016 0.95998 0.81884 0.96805 0.89580 1.21871 1.00798 0.97201 0.96297 1.21485 0.97984 0.95428 1.00446 1.22286 0.94630 1.02055 0.98723 1.20111 0.88413 0.92109 0.92096 0.93391 1.42403 1.12213 1.13261 1.68605 1.19248 0.97667 0.90591 1.29232 0.91152 1.24740 0.97035 0.97404 1.01902 1.69664 1.09890 1.27671 1.51058 0.86197 0.78472 0.82808 0.78784 1.21752 1.20751 1.21810 1.22094 0.93919 0.99898 1.00851 0.92853 0.92642 0.92691 0.92049 0.91991 0.91206 0.91278 0.89087 0.88990 0.76754 0.92281 0.92141 0.92206 0.92550 0.91911 0.92679 0.78352 0.93562 0.91757 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.15 0.37 -0.65 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.10 -0.93 4.50 -26.73 -0.12 -1.05 16 4 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 5 C 0.51 6.32 7.79 -10.99 -0.09 6.24 16 6 O -0.54 -8.96 15.64 5.55 0.09 -8.87 16 7 N -0.73 -8.47 5.08 -53.81 -0.27 -8.74 16 8 C 0.15 2.09 2.45 -67.93 -0.17 1.93 16 9 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 10 C -0.12 -1.69 5.49 -26.73 -0.15 -1.84 16 11 C -0.11 -1.68 5.92 -26.73 -0.16 -1.84 16 12 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 13 C 0.18 3.58 2.77 -67.90 -0.19 3.39 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.90 5.12 -53.40 -0.27 -18.18 16 16 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 C -0.13 -2.05 4.87 -26.70 -0.13 -2.18 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -31.66 352.58 -8.99 -40.65 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.21 Total: 7.92 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.34 Total: -8.14 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.18 Total: -54.27 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.66 -8.99 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.713 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds