Wall clock time and date at job start Mon Mar 30 2020 00:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47494 * 2 1 4 4 C 1.53001 * 109.47193 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47064 * 179.97438 * 4 3 2 6 6 O 1.21284 * 119.99743 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99964 * 179.97438 * 5 4 3 8 8 C 1.46502 * 120.00146 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46790 * 35.00133 * 8 7 5 10 10 C 1.52996 * 109.47433 * 275.00199 * 8 7 5 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46925 * 59.99873 * 11 10 8 13 13 C 1.52996 * 109.47389 * 299.99590 * 12 11 10 14 14 H 1.08999 * 109.47454 * 300.00556 * 13 12 11 15 15 N 1.46499 * 109.47169 * 180.02562 * 13 12 11 16 16 C 1.36931 * 120.00122 * 85.00412 * 15 13 12 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48501 * 109.46922 * 269.71949 * 20 18 16 22 22 H 1.48496 * 109.47354 * 29.72145 * 20 18 16 23 23 H 1.48501 * 109.47428 * 149.72253 * 20 18 16 24 24 C 1.53005 * 109.47072 * 154.99894 * 8 7 5 25 25 H 1.09001 * 109.47488 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47266 * 300.00174 * 1 2 3 27 27 H 1.08997 * 109.47225 * 59.99774 * 1 2 3 28 28 H 1.09003 * 109.47266 * 239.99826 * 2 1 3 29 29 H 1.09004 * 109.46879 * 120.00127 * 2 1 3 30 30 H 1.08997 * 109.46803 * 60.00060 * 3 2 1 31 31 H 1.08997 * 109.47069 * 300.00321 * 3 2 1 32 32 H 1.09007 * 109.46953 * 59.99801 * 4 3 2 33 33 H 1.09004 * 109.47023 * 300.00030 * 4 3 2 34 34 H 0.97006 * 120.00284 * 0.02562 * 7 5 4 35 35 H 1.09005 * 109.46772 * 59.99649 * 10 8 7 36 36 H 1.08999 * 109.47079 * 299.99758 * 10 8 7 37 37 H 1.08999 * 109.46935 * 299.99919 * 11 10 8 38 38 H 1.08995 * 109.47084 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.46971 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47276 * 60.00256 * 12 11 10 41 41 H 0.97001 * 119.99790 * 264.99929 * 15 13 12 42 42 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47117 * 60.00440 * 24 8 7 44 44 H 1.09002 * 109.47054 * 299.99825 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 8 3.2843 3.7850 -0.0008 7 7 5.3975 3.1094 -0.0014 8 6 5.8859 4.4906 -0.0026 9 1 5.2133 5.1142 0.5863 10 6 5.9375 5.0121 -1.4400 11 6 6.4470 6.4548 -1.4411 12 6 7.8494 6.5008 -0.8312 13 6 7.7978 5.9794 0.6062 14 1 7.1249 6.6028 1.1950 15 7 9.1406 6.0240 1.1904 16 6 9.5991 7.1792 1.7652 17 1 8.9707 8.0573 1.7882 18 6 10.8716 7.2217 2.3182 19 7 11.6372 6.1514 2.2906 20 14 11.4941 8.7953 3.1092 21 1 12.1866 9.6220 2.0883 22 1 10.3475 9.5560 3.6675 23 1 12.4433 8.4589 4.2006 24 6 7.2885 4.5360 0.6072 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9286 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 6.0278 2.3721 -0.0014 35 1 4.9382 4.9796 -1.8743 36 1 6.6101 4.3884 -2.0288 37 1 5.7741 7.0782 -0.8524 38 1 6.4833 6.8265 -2.4651 39 1 8.2122 7.5287 -0.8316 40 1 8.5223 5.8774 -1.4200 41 1 9.7047 5.2353 1.1701 42 1 12.5263 6.1810 2.6774 43 1 7.9610 3.9124 0.0183 44 1 7.2517 4.1646 1.6313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266048587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:27 Heat of formation + Delta-G solvation = -88.328028 kcal Electronic energy + Delta-G solvation = -20532.232593 eV Core-core repulsion = 17482.105906 eV Total energy + Delta-G solvation = -3050.126687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06784 -39.33863 -36.43334 -36.01018 -34.79111 -32.95437 -31.73430 -30.35558 -29.31576 -25.82300 -25.52479 -23.27751 -22.70336 -21.80950 -21.32370 -20.70010 -19.16767 -17.82594 -17.42645 -16.89107 -16.42527 -15.94392 -15.60346 -15.39497 -15.09235 -15.03236 -14.70581 -14.55248 -14.20229 -13.81666 -13.46584 -13.39852 -13.20167 -12.92053 -12.80984 -12.28375 -12.18022 -12.14815 -12.06154 -12.03604 -11.97925 -11.83443 -11.64670 -11.48465 -11.42274 -11.37825 -10.88193 -10.70200 -10.00539 -9.00473 -7.94520 -5.22297 1.47008 1.47920 1.56367 1.71506 2.23543 2.56560 3.38649 3.63472 3.79935 3.86754 3.96729 4.05255 4.09667 4.25122 4.30859 4.37950 4.47090 4.50019 4.53718 4.57153 4.66880 4.68229 4.75669 4.82137 4.97250 5.01242 5.03841 5.13512 5.14511 5.17215 5.21319 5.30905 5.34831 5.41644 5.49423 5.49975 5.52389 5.56616 5.66135 6.28427 6.64366 7.33960 7.34668 8.10183 8.34244 9.28830 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.003097 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.983140 B = 9038.785544 C = 9397.601583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.133 4.133 5 C 0.505 3.495 6 O -0.590 6.590 7 N -0.716 5.716 8 C 0.157 3.843 9 H 0.063 0.937 10 C -0.115 4.115 11 C -0.107 4.107 12 C -0.126 4.126 13 C 0.176 3.824 14 H 0.034 0.966 15 N -0.736 5.736 16 C -0.237 4.237 17 H 0.071 0.929 18 C -0.076 4.076 19 N -0.968 5.968 20 Si 0.969 3.031 21 H -0.287 1.287 22 H -0.272 1.272 23 H -0.295 1.295 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.469 -13.461 -7.890 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.173 4.173 5 C 0.294 3.706 6 O -0.470 6.470 7 N -0.367 5.367 8 C 0.051 3.949 9 H 0.081 0.919 10 C -0.153 4.153 11 C -0.146 4.146 12 C -0.166 4.166 13 C 0.068 3.932 14 H 0.052 0.948 15 N -0.375 5.375 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.798 3.202 21 H -0.215 1.215 22 H -0.197 1.197 23 H -0.221 1.221 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.031 -12.640 -7.793 23.358 hybrid contribution 1.213 0.591 0.604 1.479 sum -16.818 -12.048 -7.189 21.902 Atomic orbital electron populations 1.21790 0.95922 1.02039 1.01574 1.21524 0.95984 0.95228 1.03010 1.21336 0.93378 0.97551 1.01915 1.21756 0.97439 0.91458 1.06612 1.21481 0.81889 0.92895 0.74354 1.90682 1.56385 1.48335 1.51600 1.46076 1.07337 1.08649 1.74683 1.20711 0.94199 0.83257 0.96734 0.91878 1.21794 1.01063 0.96589 0.95885 1.21417 0.95623 0.96366 1.01170 1.22091 0.96639 1.00469 0.97437 1.20321 0.85854 0.94500 0.92563 0.94833 1.42571 1.13890 1.12106 1.68961 1.19574 0.97647 0.91458 1.28220 0.91080 1.25504 0.97535 1.00398 1.03338 1.69805 1.10017 1.29529 1.52556 0.85201 0.77879 0.79417 0.77664 1.21452 1.19730 1.22148 1.21875 0.95096 0.97356 1.00911 0.91704 0.93281 0.93088 0.90754 0.91031 0.93214 0.92852 0.86301 0.86758 0.74864 0.92216 0.90666 0.92591 0.90595 0.94059 0.92689 0.79401 0.94053 0.90531 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.10 -1.70 4.50 30.60 0.14 -1.57 16 4 C -0.13 -1.88 5.70 29.85 0.17 -1.71 16 5 C 0.51 11.75 7.79 87.66 0.68 12.43 16 6 O -0.59 -19.27 15.64 -3.04 -0.05 -19.32 16 7 N -0.72 -15.26 5.08 -442.54 -2.25 -17.51 16 8 C 0.16 4.26 2.45 44.99 0.11 4.37 16 9 H 0.06 2.05 7.58 -2.39 -0.02 2.03 16 10 C -0.11 -2.93 5.49 30.59 0.17 -2.76 16 11 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 12 C -0.13 -4.41 5.50 30.59 0.17 -4.24 16 13 C 0.18 6.90 2.77 45.01 0.12 7.03 16 14 H 0.03 1.40 8.08 -2.39 -0.02 1.39 16 15 N -0.74 -36.73 5.12 -322.86 -1.65 -38.39 16 16 C -0.24 -13.20 9.93 84.03 0.83 -12.37 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 19 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 20 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 24 C -0.11 -3.51 4.87 30.62 0.15 -3.36 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 31 H 0.05 1.03 8.10 -2.39 -0.02 1.02 16 32 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.41 6.30 8.60 -92.70 -0.80 5.50 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 42 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -68.99 352.58 1.89 -67.10 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.56 Total: 29.49 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 4.09 Total: -11.20 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.62 Total: -114.51 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -68.99 1.89 -67.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.232 kcal (2) G-P(sol) polarization free energy of solvation -68.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds