Wall clock time and date at job start Mon Mar 30 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46712 * 2 1 4 4 C 1.53004 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 H 1.09007 * 109.47747 * 35.00142 * 8 7 5 10 10 C 1.53001 * 109.47313 * 274.99614 * 8 7 5 11 11 C 1.53002 * 109.46843 * 300.00238 * 10 8 7 12 12 C 1.52995 * 109.47434 * 299.99796 * 11 10 8 13 13 C 1.52997 * 109.47067 * 59.99753 * 12 11 10 14 14 H 1.09003 * 109.46891 * 60.00368 * 13 12 11 15 15 N 1.46506 * 109.47460 * 179.97438 * 13 12 11 16 16 C 1.36933 * 119.99983 * 275.00909 * 15 13 12 17 17 H 1.08000 * 120.00274 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99822 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99703 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47227 * 120.00079 * 20 18 16 23 23 H 1.48502 * 109.47096 * 240.00151 * 20 18 16 24 24 C 1.52999 * 109.47702 * 300.00282 * 13 12 11 25 25 H 1.09000 * 109.46707 * 60.01096 * 1 2 3 26 26 H 1.08996 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47108 * 300.00413 * 1 2 3 28 28 H 1.08995 * 109.47108 * 239.99587 * 2 1 3 29 29 H 1.09001 * 109.46268 * 119.99210 * 2 1 3 30 30 H 1.09000 * 109.47849 * 59.99518 * 3 2 1 31 31 H 1.08998 * 109.47443 * 299.99385 * 3 2 1 32 32 H 1.09009 * 109.46730 * 59.99606 * 4 3 2 33 33 H 1.08998 * 109.46846 * 300.00150 * 4 3 2 34 34 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 35 35 H 1.08998 * 109.46617 * 60.00312 * 10 8 7 36 36 H 1.09003 * 109.47371 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46986 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.46809 * 60.00102 * 11 10 8 39 39 H 1.09004 * 109.47190 * 300.00670 * 12 11 10 40 40 H 1.08994 * 109.47294 * 180.02562 * 12 11 10 41 41 H 0.97005 * 119.99414 * 94.99680 * 15 13 12 42 42 H 0.97001 * 120.00008 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47018 * 300.00008 * 24 13 12 44 44 H 1.09001 * 109.47492 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 -0.0013 7 7 5.3974 3.1097 -0.0053 8 6 5.8856 4.4909 -0.0119 9 1 5.2150 5.1163 0.5774 10 6 5.9324 5.0083 -1.4510 11 6 6.8739 4.1306 -2.2782 12 6 8.2784 4.1779 -1.6733 13 6 8.2316 3.6606 -0.2342 14 1 7.8683 2.6329 -0.2292 15 7 9.5766 3.7052 0.3448 16 6 10.4455 2.6672 0.1388 17 1 10.1393 1.8153 -0.4502 18 6 11.7201 2.7098 0.6871 19 7 12.0932 3.7478 1.4053 20 14 12.9053 1.2935 0.4067 21 1 12.2481 0.2559 -0.4279 22 1 14.1180 1.7933 -0.2896 23 1 13.2923 0.7057 1.7144 24 6 7.2902 4.5383 0.5930 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9565 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 6.0277 2.3724 -0.0045 35 1 4.9318 4.9746 -1.8819 36 1 6.2961 6.0359 -1.4561 37 1 6.9069 4.4989 -3.3035 38 1 6.5105 3.1029 -2.2732 39 1 8.6417 5.2056 -1.6782 40 1 8.9491 3.5529 -2.2629 41 1 9.8515 4.4703 0.8740 42 1 12.9837 3.7774 1.7888 43 1 7.6535 5.5660 0.5880 44 1 7.2565 4.1694 1.6182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266048589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:32 Heat of formation + Delta-G solvation = -65.770954 kcal Electronic energy + Delta-G solvation = -20933.196654 eV Core-core repulsion = 17884.048115 eV Total energy + Delta-G solvation = -3049.148539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08231 -38.05653 -35.49102 -34.43426 -33.02787 -31.20036 -30.85070 -29.29959 -27.86136 -24.87676 -23.72408 -22.10261 -21.49439 -21.00485 -20.46326 -18.78618 -17.29895 -16.88100 -16.10825 -15.47723 -15.33688 -14.73992 -14.41882 -13.97730 -13.89661 -13.84027 -13.45223 -13.07462 -12.93524 -12.48537 -12.39805 -12.05914 -11.91437 -11.73051 -11.48036 -11.33812 -11.17240 -11.01976 -10.91861 -10.77600 -10.75617 -10.38212 -10.18760 -10.17044 -9.75590 -9.68661 -9.53264 -8.94349 -8.81286 -6.99468 -5.80317 -3.09218 2.75761 3.33138 3.40134 3.45623 3.48041 4.54215 4.65590 4.71093 4.76205 4.99895 5.09356 5.13071 5.15692 5.19125 5.33693 5.48415 5.51176 5.58381 5.63020 5.64523 5.69372 5.74128 5.77726 5.88280 5.92611 5.98101 6.06291 6.08028 6.11369 6.19916 6.27454 6.29385 6.49701 6.56728 6.71020 6.71849 6.93004 7.07410 7.65850 7.67303 8.35937 8.38135 9.49376 10.07137 10.41527 11.42359 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.003873 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.712121 B = 7228.695515 C = 7998.835282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.144 4.144 5 C 0.511 3.489 6 O -0.550 6.550 7 N -0.719 5.719 8 C 0.150 3.850 9 H 0.082 0.918 10 C -0.127 4.127 11 C -0.115 4.115 12 C -0.137 4.137 13 C 0.181 3.819 14 H 0.041 0.959 15 N -0.725 5.725 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.133 4.133 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.282 -4.023 -4.047 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.184 4.184 5 C 0.297 3.703 6 O -0.428 6.428 7 N -0.372 5.372 8 C 0.046 3.954 9 H 0.100 0.900 10 C -0.165 4.165 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.071 3.929 14 H 0.059 0.941 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.172 4.172 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.239 0.761 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.094 0.906 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.729 -3.523 -4.071 19.488 hybrid contribution 1.310 -0.831 -0.023 1.551 sum -17.420 -4.354 -4.094 18.416 Atomic orbital electron populations 1.21761 0.95836 1.01419 1.01953 1.21561 0.96010 0.96768 1.02031 1.21352 0.92893 0.96389 1.03474 1.21723 0.97964 0.94264 1.04434 1.20711 0.82381 0.91570 0.75598 1.90669 1.55431 1.46595 1.50135 1.46265 1.06905 1.09406 1.74575 1.20932 0.95456 0.82526 0.96528 0.89974 1.21889 0.99579 0.99705 0.95360 1.21498 0.96142 0.99390 0.98260 1.22281 0.94677 1.01649 0.99102 1.20141 0.86322 0.95845 0.90595 0.94076 1.42437 1.09454 1.23099 1.61545 1.19263 0.93391 0.97649 1.26649 0.91184 1.24747 0.97732 0.97939 1.00565 1.69668 1.19639 1.29785 1.38942 0.86145 0.81293 0.81627 0.77279 1.20573 1.21900 1.21885 1.22125 0.93106 1.01999 0.99971 0.92728 0.92873 0.92700 0.91993 0.91962 0.91314 0.91338 0.89004 0.88945 0.76112 0.92175 0.91263 0.92923 0.92655 0.92585 0.92112 0.78264 0.93548 0.90624 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.10 -0.99 4.50 -26.73 -0.12 -1.11 16 4 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 5 C 0.51 6.70 7.79 -10.98 -0.09 6.62 16 6 O -0.55 -9.09 15.65 5.55 0.09 -9.00 16 7 N -0.72 -9.24 4.23 -53.80 -0.23 -9.47 16 8 C 0.15 2.11 2.78 -67.93 -0.19 1.92 16 9 H 0.08 1.21 7.58 -51.93 -0.39 0.82 16 10 C -0.13 -1.72 5.60 -26.73 -0.15 -1.87 16 11 C -0.11 -1.60 5.77 -26.73 -0.15 -1.76 16 12 C -0.14 -2.34 5.50 -26.74 -0.15 -2.49 16 13 C 0.18 3.33 2.60 -67.93 -0.18 3.15 16 14 H 0.04 0.75 6.44 -51.93 -0.33 0.41 16 15 N -0.72 -17.38 5.12 -53.42 -0.27 -17.66 16 16 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 C -0.13 -2.09 5.08 -26.73 -0.14 -2.23 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 4.84 6.87 -40.82 -0.28 4.56 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.75 7.60 -51.93 -0.39 0.35 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.38 9.90 7.80 -40.82 -0.32 9.58 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -30.63 348.15 -8.85 -39.48 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.03 Total: 9.63 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.35 Total: -8.18 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.22 Total: -54.09 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.63 -8.85 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.292 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds