Wall clock time and date at job start Mon Mar 30 2020 00:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46712 * 2 1 4 4 C 1.53004 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47208 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 3 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 H 1.09007 * 109.47747 * 35.00142 * 8 7 5 10 10 C 1.53001 * 109.47313 * 274.99614 * 8 7 5 11 11 C 1.53002 * 109.46843 * 300.00238 * 10 8 7 12 12 C 1.52995 * 109.47434 * 299.99796 * 11 10 8 13 13 C 1.52997 * 109.47067 * 59.99753 * 12 11 10 14 14 H 1.09003 * 109.46891 * 60.00368 * 13 12 11 15 15 N 1.46506 * 109.47460 * 179.97438 * 13 12 11 16 16 C 1.36933 * 119.99983 * 275.00909 * 15 13 12 17 17 H 1.08000 * 120.00274 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99822 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99703 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00129 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47159 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47227 * 120.00079 * 20 18 16 23 23 H 1.48502 * 109.47096 * 240.00151 * 20 18 16 24 24 C 1.52999 * 109.47702 * 300.00282 * 13 12 11 25 25 H 1.09000 * 109.46707 * 60.01096 * 1 2 3 26 26 H 1.08996 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47108 * 300.00413 * 1 2 3 28 28 H 1.08995 * 109.47108 * 239.99587 * 2 1 3 29 29 H 1.09001 * 109.46268 * 119.99210 * 2 1 3 30 30 H 1.09000 * 109.47849 * 59.99518 * 3 2 1 31 31 H 1.08998 * 109.47443 * 299.99385 * 3 2 1 32 32 H 1.09009 * 109.46730 * 59.99606 * 4 3 2 33 33 H 1.08998 * 109.46846 * 300.00150 * 4 3 2 34 34 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 35 35 H 1.08998 * 109.46617 * 60.00312 * 10 8 7 36 36 H 1.09003 * 109.47371 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46986 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.46809 * 60.00102 * 11 10 8 39 39 H 1.09004 * 109.47190 * 300.00670 * 12 11 10 40 40 H 1.08994 * 109.47294 * 180.02562 * 12 11 10 41 41 H 0.97005 * 119.99414 * 94.99680 * 15 13 12 42 42 H 0.97001 * 120.00008 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47018 * 300.00008 * 24 13 12 44 44 H 1.09001 * 109.47492 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 -0.0013 7 7 5.3974 3.1097 -0.0053 8 6 5.8856 4.4909 -0.0119 9 1 5.2150 5.1163 0.5774 10 6 5.9324 5.0083 -1.4510 11 6 6.8739 4.1306 -2.2782 12 6 8.2784 4.1779 -1.6733 13 6 8.2316 3.6606 -0.2342 14 1 7.8683 2.6329 -0.2292 15 7 9.5766 3.7052 0.3448 16 6 10.4455 2.6672 0.1388 17 1 10.1393 1.8153 -0.4502 18 6 11.7201 2.7098 0.6871 19 7 12.0932 3.7478 1.4053 20 14 12.9053 1.2935 0.4067 21 1 12.2481 0.2559 -0.4279 22 1 14.1180 1.7933 -0.2896 23 1 13.2923 0.7057 1.7144 24 6 7.2902 4.5383 0.5930 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9565 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9289 0.8908 34 1 6.0277 2.3724 -0.0045 35 1 4.9318 4.9746 -1.8819 36 1 6.2961 6.0359 -1.4561 37 1 6.9069 4.4989 -3.3035 38 1 6.5105 3.1029 -2.2732 39 1 8.6417 5.2056 -1.6782 40 1 8.9491 3.5529 -2.2629 41 1 9.8515 4.4703 0.8740 42 1 12.9837 3.7774 1.7888 43 1 7.6535 5.5660 0.5880 44 1 7.2565 4.1694 1.6182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266048589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:32 Heat of formation + Delta-G solvation = -84.073881 kcal Electronic energy + Delta-G solvation = -20933.990328 eV Core-core repulsion = 17884.048115 eV Total energy + Delta-G solvation = -3049.942213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21729 -39.31003 -36.35123 -35.97110 -34.39725 -32.93024 -31.75224 -30.45292 -29.44798 -25.80726 -25.51194 -23.32683 -22.57469 -22.14872 -21.42359 -20.07570 -19.14227 -18.02262 -17.00313 -16.75943 -16.64697 -16.18112 -15.65293 -15.35757 -15.03388 -14.85607 -14.78225 -14.52653 -13.99827 -13.67870 -13.42615 -13.19108 -13.11059 -13.01938 -12.88926 -12.80831 -12.20160 -12.16180 -12.04088 -12.01048 -11.94836 -11.83053 -11.59293 -11.45878 -11.41422 -10.99441 -10.84161 -10.76049 -9.96496 -8.97716 -7.91815 -5.19699 1.49094 1.49572 1.59110 1.73445 2.31554 2.57913 3.41990 3.65160 3.85398 3.89713 3.93489 3.99033 4.09846 4.29998 4.31467 4.36984 4.41810 4.49813 4.56609 4.67451 4.68917 4.73098 4.79136 4.83862 4.97600 4.97731 5.04231 5.12068 5.14343 5.19031 5.23563 5.31076 5.37980 5.41906 5.51490 5.52117 5.54656 5.58896 5.69025 6.30621 6.63806 7.33161 7.36667 8.13444 8.35484 9.32059 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.003873 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.712121 B = 7228.695515 C = 7998.835282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.100 4.100 4 C -0.138 4.138 5 C 0.509 3.491 6 O -0.587 6.587 7 N -0.715 5.715 8 C 0.158 3.842 9 H 0.077 0.923 10 C -0.121 4.121 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.178 3.822 14 H 0.049 0.951 15 N -0.738 5.738 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.298 1.298 23 H -0.296 1.296 24 C -0.121 4.121 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.409 0.591 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.360 -5.664 -5.029 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.138 4.138 4 C -0.177 4.177 5 C 0.297 3.703 6 O -0.468 6.468 7 N -0.368 5.368 8 C 0.052 3.948 9 H 0.095 0.905 10 C -0.159 4.159 11 C -0.142 4.142 12 C -0.168 4.168 13 C 0.070 3.930 14 H 0.067 0.933 15 N -0.377 5.377 16 C -0.363 4.363 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.226 1.226 23 H -0.223 1.223 24 C -0.159 4.159 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.246 0.754 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.848 -5.198 -5.086 21.139 hybrid contribution 1.562 -0.289 0.267 1.611 sum -18.287 -5.487 -4.819 19.691 Atomic orbital electron populations 1.21781 0.95702 1.02030 1.01664 1.21535 0.96146 0.95373 1.02866 1.21312 0.93014 0.97457 1.02056 1.21772 0.97738 0.91949 1.06289 1.21335 0.81869 0.92694 0.74392 1.90657 1.56222 1.48078 1.51821 1.46232 1.07189 1.08995 1.74351 1.20767 0.93923 0.83384 0.96711 0.90527 1.21836 0.99458 0.99960 0.94683 1.21399 0.93828 1.00177 0.98757 1.22109 0.96427 1.00433 0.97840 1.20368 0.84264 0.96974 0.91428 0.93306 1.42666 1.11234 1.22061 1.61761 1.19652 0.93629 0.98061 1.24969 0.90360 1.25523 0.99697 1.00422 1.01438 1.69822 1.19708 1.31894 1.40851 0.85138 0.78932 0.79207 0.76906 1.18746 1.22574 1.22335 1.21959 0.93558 1.01237 0.99185 0.92995 0.91797 0.93099 0.91013 0.91187 0.92905 0.92689 0.86836 0.87144 0.75426 0.92071 0.90710 0.91483 0.91736 0.93577 0.93912 0.79742 0.94237 0.90795 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.99 0.71 -1.28 16 2 C -0.12 -1.60 5.93 30.60 0.18 -1.41 16 3 C -0.10 -1.77 4.50 30.59 0.14 -1.64 16 4 C -0.14 -2.30 5.70 29.85 0.17 -2.13 16 5 C 0.51 12.47 7.79 87.66 0.68 13.15 16 6 O -0.59 -18.90 15.65 -3.04 -0.05 -18.95 16 7 N -0.72 -17.00 4.23 -442.52 -1.87 -18.87 16 8 C 0.16 4.19 2.78 44.99 0.13 4.31 16 9 H 0.08 2.19 7.58 -2.38 -0.02 2.17 16 10 C -0.12 -3.04 5.60 30.60 0.17 -2.87 16 11 C -0.10 -2.64 5.77 30.59 0.18 -2.47 16 12 C -0.13 -4.21 5.50 30.59 0.17 -4.05 16 13 C 0.18 6.35 2.60 44.99 0.12 6.47 16 14 H 0.05 1.68 6.44 -2.39 -0.02 1.67 16 15 N -0.74 -35.33 5.12 -322.93 -1.65 -36.99 16 16 C -0.23 -12.26 9.93 84.04 0.83 -11.43 16 17 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 19 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 20 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 24 C -0.12 -3.69 5.08 30.60 0.16 -3.54 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 8.83 6.87 -92.71 -0.64 8.20 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.55 7.60 -2.39 -0.02 1.53 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.37 19.44 7.80 -92.70 -0.72 18.72 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.50 348.15 2.44 -63.06 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.39 Total: 33.82 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.10 Total: -10.81 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -3.24 Total: -114.24 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.50 2.44 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266048589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.013 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds