Wall clock time and date at job start Mon Mar 30 2020 00:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47009 * 54.99893 * 4 3 2 6 6 C 1.53000 * 109.47194 * 295.00287 * 4 3 2 7 7 C 1.52992 * 109.47325 * 175.00345 * 4 3 2 8 8 C 1.50704 * 109.47500 * 185.00124 * 7 4 3 9 9 O 1.21283 * 119.99618 * 359.97438 * 8 7 4 10 10 N 1.34771 * 120.00179 * 179.97438 * 8 7 4 11 11 C 1.46498 * 120.00127 * 179.72440 * 10 8 7 12 12 H 1.09004 * 112.85018 * 46.23080 * 11 10 8 13 13 C 1.53779 * 113.61799 * 177.53919 * 11 10 8 14 14 C 1.53784 * 87.08162 * 89.11375 * 13 11 10 15 15 H 1.08997 * 113.68532 * 139.98826 * 14 13 11 16 16 N 1.46494 * 113.61544 * 270.88216 * 14 13 11 17 17 C 1.36931 * 120.00087 * 255.06880 * 16 14 13 18 18 H 1.07998 * 120.00524 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99798 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99760 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99983 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46880 * 89.99922 * 21 19 17 23 23 H 1.48496 * 109.47388 * 209.99709 * 21 19 17 24 24 H 1.48506 * 109.47419 * 330.00268 * 21 19 17 25 25 C 1.53787 * 113.61345 * 275.04027 * 11 10 8 26 26 H 1.08996 * 109.47045 * 299.99717 * 1 2 3 27 27 H 1.08998 * 109.46717 * 59.99668 * 1 2 3 28 28 H 1.09001 * 109.46928 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47199 * 239.99887 * 2 1 3 30 30 H 1.09003 * 109.47375 * 120.00544 * 2 1 3 31 31 H 1.08996 * 109.46945 * 60.00221 * 3 2 1 32 32 H 1.08998 * 109.47610 * 299.99785 * 3 2 1 33 33 H 1.09000 * 109.47194 * 299.99774 * 6 4 3 34 34 H 1.09007 * 109.47318 * 59.99943 * 6 4 3 35 35 H 1.09000 * 109.47179 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47521 * 64.99769 * 7 4 3 37 37 H 1.09000 * 109.47124 * 304.99817 * 7 4 3 38 38 H 0.96997 * 120.00090 * 359.97438 * 10 8 7 39 39 H 1.09004 * 113.61571 * 203.66366 * 13 11 10 40 40 H 1.08998 * 113.61065 * 334.56527 * 13 11 10 41 41 H 0.97007 * 119.99663 * 75.07371 * 16 14 13 42 42 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.61786 * 25.42106 * 25 11 10 44 44 H 1.08994 * 113.61671 * 156.25262 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8528 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0801 2.8794 -0.1250 8 6 5.5821 2.8704 -0.2479 9 8 6.1852 1.8182 -0.2357 10 7 6.2551 4.0315 -0.3714 11 6 7.7157 4.0232 -0.4848 12 1 8.0807 3.2831 -1.1970 13 6 8.3266 5.4210 -0.6787 14 6 8.3929 5.5186 0.8546 15 1 9.3051 5.9866 1.2245 16 7 7.1812 6.0765 1.4601 17 6 7.1819 7.3611 1.9342 18 1 8.0755 7.9632 1.8614 19 6 6.0335 7.8900 2.5075 20 7 6.0340 9.1249 2.9628 21 14 4.4876 6.8489 2.6328 22 1 4.4914 6.1103 3.9210 23 1 3.2924 7.7279 2.5698 24 1 4.4501 5.8809 1.5073 25 6 8.4386 3.9815 0.8719 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 3.7159 1.4225 2.1499 34 1 3.7161 -0.1908 1.3978 35 1 5.1695 0.8326 1.3085 36 1 3.7914 3.4462 0.7601 37 1 3.6459 3.3429 -1.0108 38 1 5.7727 4.8730 -0.3815 39 1 9.3054 5.4071 -1.1581 40 1 7.6420 6.1375 -1.1326 41 1 6.3784 5.5359 1.5252 42 1 5.2315 9.4946 3.3630 43 1 7.8446 3.5360 1.6698 44 1 9.4475 3.5728 0.8166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266672133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:19 Heat of formation + Delta-G solvation = -29.304875 kcal Electronic energy + Delta-G solvation = -21274.804788 eV Core-core repulsion = 18227.237537 eV Total energy + Delta-G solvation = -3047.567251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11006 -38.37149 -36.59966 -33.76455 -32.86650 -32.53741 -30.53686 -27.98060 -26.67587 -25.27778 -24.50049 -22.82831 -21.80664 -20.35589 -19.79996 -18.99375 -17.63736 -16.82555 -15.98057 -15.52104 -15.16372 -14.94414 -14.56795 -14.28771 -14.05817 -13.62897 -13.55807 -13.17552 -12.77814 -12.37950 -12.24031 -12.17334 -11.92418 -11.82441 -11.69998 -11.59078 -11.07099 -11.01817 -10.93896 -10.78878 -10.64944 -10.52175 -10.43468 -10.28985 -9.79352 -9.62562 -9.42903 -9.04353 -8.63648 -7.38719 -5.87160 -3.23593 2.85157 3.19020 3.29490 3.34813 3.42031 4.46884 4.61534 4.71938 4.77080 4.94075 5.02234 5.06943 5.08760 5.19037 5.28366 5.35257 5.40130 5.49624 5.58680 5.64028 5.67447 5.70102 5.73801 5.77166 5.82087 5.88516 6.04302 6.06180 6.07018 6.13178 6.19977 6.28221 6.38374 6.47413 6.52485 6.54340 6.70511 6.96283 7.78482 7.91324 8.32876 8.47737 9.10083 9.81986 10.01979 11.30990 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.005529 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.352713 B = 5062.888024 C = 6360.469669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.073 4.073 5 H 0.077 0.923 6 C -0.155 4.155 7 C -0.144 4.144 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.709 5.709 11 C 0.125 3.875 12 H 0.081 0.919 13 C -0.177 4.177 14 C 0.170 3.830 15 H 0.072 0.928 16 N -0.730 5.730 17 C -0.248 4.248 18 H 0.093 0.907 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.280 1.280 25 C -0.168 4.168 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.405 0.595 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.361 0.639 42 H 0.261 0.739 43 H 0.066 0.934 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -15.290 -7.985 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.091 4.091 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.184 4.184 8 C 0.301 3.699 9 O -0.421 6.421 10 N -0.362 5.362 11 C 0.020 3.980 12 H 0.099 0.901 13 C -0.218 4.218 14 C 0.059 3.941 15 H 0.090 0.910 16 N -0.372 5.372 17 C -0.378 4.378 18 H 0.111 0.889 19 C -0.189 4.189 20 N -0.577 5.577 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.207 1.207 25 C -0.208 4.208 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.241 0.759 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.195 0.805 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.374 -15.761 -7.877 18.421 hybrid contribution -1.456 -0.094 0.147 1.467 sum -6.830 -15.855 -7.730 18.915 Atomic orbital electron populations 1.21785 0.96123 1.01365 1.01747 1.21563 0.95483 0.97001 1.02189 1.21703 0.94837 0.96901 1.02076 1.20870 0.94314 0.94166 0.99791 0.90486 1.22004 1.03225 0.99979 0.95990 1.21828 0.92468 0.99691 1.04386 1.20637 0.89968 0.83648 0.75661 1.90623 1.70518 1.30857 1.50095 1.45965 1.07249 1.09121 1.73830 1.21762 0.79641 0.98670 0.97941 0.90082 1.24101 1.00619 0.95025 1.02100 1.21121 0.91128 0.91280 0.90609 0.91020 1.42599 1.09381 1.13744 1.71428 1.19132 0.99147 0.87833 1.31650 0.88905 1.24679 0.97574 0.96104 1.00583 1.69685 1.28642 1.13952 1.45421 0.86614 0.84470 0.79713 0.77878 1.20990 1.21531 1.20653 1.23845 1.00475 0.99006 0.97439 0.92791 0.92873 0.92970 0.92122 0.91692 0.91869 0.92016 0.93394 0.92875 0.90615 0.88916 0.89064 0.75870 0.89542 0.90752 0.80471 0.92918 0.91508 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.12 5.69 -26.73 -0.15 -1.27 16 3 C -0.12 -1.17 4.68 -26.73 -0.13 -1.29 16 4 C -0.07 -0.86 2.04 -90.62 -0.18 -1.05 16 5 H 0.08 0.97 7.96 -51.92 -0.41 0.56 16 6 C -0.15 -1.97 8.69 37.16 0.32 -1.65 16 7 C -0.14 -1.86 5.17 -27.89 -0.14 -2.00 16 8 C 0.51 8.10 7.55 -10.99 -0.08 8.02 16 9 O -0.54 -9.76 13.90 5.55 0.08 -9.68 16 10 N -0.71 -11.27 4.34 -53.01 -0.23 -11.50 16 11 C 0.12 1.96 4.00 -67.12 -0.27 1.69 16 12 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 13 C -0.18 -2.77 7.57 -25.92 -0.20 -2.96 16 14 C 0.17 3.16 4.55 -67.12 -0.31 2.86 16 15 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 16 N -0.73 -16.48 4.82 -52.63 -0.25 -16.73 16 17 C -0.25 -6.72 10.46 -15.06 -0.16 -6.88 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 21 Si 0.88 21.10 27.74 -169.99 -4.71 16.38 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -5.94 6.52 56.52 0.37 -5.58 16 25 C -0.17 -2.75 7.62 -25.91 -0.20 -2.95 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 35 H 0.07 1.15 5.95 -51.93 -0.31 0.84 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.41 6.52 7.81 -40.82 -0.32 6.20 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 41 H 0.36 7.98 4.22 -40.82 -0.17 7.81 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -30.39 346.36 -8.17 -38.55 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -7.82 Total: 13.62 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.22 Total: -8.25 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.29 Total: -55.83 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.39 -8.17 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266672133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.248 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds