Wall clock time and date at job start Mon Mar 30 2020 00:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47093 * 2 1 4 4 C 1.53003 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47009 * 54.99893 * 4 3 2 6 6 C 1.53000 * 109.47194 * 295.00287 * 4 3 2 7 7 C 1.52992 * 109.47325 * 175.00345 * 4 3 2 8 8 C 1.50704 * 109.47500 * 185.00124 * 7 4 3 9 9 O 1.21283 * 119.99618 * 359.97438 * 8 7 4 10 10 N 1.34771 * 120.00179 * 179.97438 * 8 7 4 11 11 C 1.46498 * 120.00127 * 179.72440 * 10 8 7 12 12 H 1.09004 * 112.85018 * 46.23080 * 11 10 8 13 13 C 1.53779 * 113.61799 * 177.53919 * 11 10 8 14 14 C 1.53784 * 87.08162 * 89.11375 * 13 11 10 15 15 H 1.08997 * 113.68532 * 139.98826 * 14 13 11 16 16 N 1.46494 * 113.61544 * 270.88216 * 14 13 11 17 17 C 1.36931 * 120.00087 * 255.06880 * 16 14 13 18 18 H 1.07998 * 120.00524 * 0.02562 * 17 16 14 19 19 C 1.38824 * 119.99798 * 179.97438 * 17 16 14 20 20 N 1.31613 * 119.99760 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99983 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.46880 * 89.99922 * 21 19 17 23 23 H 1.48496 * 109.47388 * 209.99709 * 21 19 17 24 24 H 1.48506 * 109.47419 * 330.00268 * 21 19 17 25 25 C 1.53787 * 113.61345 * 275.04027 * 11 10 8 26 26 H 1.08996 * 109.47045 * 299.99717 * 1 2 3 27 27 H 1.08998 * 109.46717 * 59.99668 * 1 2 3 28 28 H 1.09001 * 109.46928 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47199 * 239.99887 * 2 1 3 30 30 H 1.09003 * 109.47375 * 120.00544 * 2 1 3 31 31 H 1.08996 * 109.46945 * 60.00221 * 3 2 1 32 32 H 1.08998 * 109.47610 * 299.99785 * 3 2 1 33 33 H 1.09000 * 109.47194 * 299.99774 * 6 4 3 34 34 H 1.09007 * 109.47318 * 59.99943 * 6 4 3 35 35 H 1.09000 * 109.47179 * 179.97438 * 6 4 3 36 36 H 1.08995 * 109.47521 * 64.99769 * 7 4 3 37 37 H 1.09000 * 109.47124 * 304.99817 * 7 4 3 38 38 H 0.96997 * 120.00090 * 359.97438 * 10 8 7 39 39 H 1.09004 * 113.61571 * 203.66366 * 13 11 10 40 40 H 1.08998 * 113.61065 * 334.56527 * 13 11 10 41 41 H 0.97007 * 119.99663 * 75.07371 * 16 14 13 42 42 H 0.96999 * 120.00022 * 179.97438 * 20 19 17 43 43 H 1.08995 * 113.61786 * 25.42106 * 25 11 10 44 44 H 1.08994 * 113.61671 * 156.25262 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8528 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0801 2.8794 -0.1250 8 6 5.5821 2.8704 -0.2479 9 8 6.1852 1.8182 -0.2357 10 7 6.2551 4.0315 -0.3714 11 6 7.7157 4.0232 -0.4848 12 1 8.0807 3.2831 -1.1970 13 6 8.3266 5.4210 -0.6787 14 6 8.3929 5.5186 0.8546 15 1 9.3051 5.9866 1.2245 16 7 7.1812 6.0765 1.4601 17 6 7.1819 7.3611 1.9342 18 1 8.0755 7.9632 1.8614 19 6 6.0335 7.8900 2.5075 20 7 6.0340 9.1249 2.9628 21 14 4.4876 6.8489 2.6328 22 1 4.4914 6.1103 3.9210 23 1 3.2924 7.7279 2.5698 24 1 4.4501 5.8809 1.5073 25 6 8.4386 3.9815 0.8719 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 3.7159 1.4225 2.1499 34 1 3.7161 -0.1908 1.3978 35 1 5.1695 0.8326 1.3085 36 1 3.7914 3.4462 0.7601 37 1 3.6459 3.3429 -1.0108 38 1 5.7727 4.8730 -0.3815 39 1 9.3054 5.4071 -1.1581 40 1 7.6420 6.1375 -1.1326 41 1 6.3784 5.5359 1.5252 42 1 5.2315 9.4946 3.3630 43 1 7.8446 3.5360 1.6698 44 1 9.4475 3.5728 0.8166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266672133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:18 Heat of formation + Delta-G solvation = -47.652796 kcal Electronic energy + Delta-G solvation = -21275.600413 eV Core-core repulsion = 18227.237537 eV Total energy + Delta-G solvation = -3048.362876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37486 -39.65273 -37.54790 -35.56341 -34.17661 -33.52728 -32.46146 -29.01873 -27.48949 -26.61645 -26.18949 -24.27718 -22.83665 -21.41577 -20.94054 -20.45215 -19.46943 -18.03039 -17.20859 -16.64782 -16.54043 -16.21646 -15.96536 -15.71906 -15.22163 -14.72446 -14.69806 -14.45789 -14.18684 -13.82132 -13.56231 -13.31460 -13.16900 -12.93434 -12.82477 -12.67590 -12.55152 -12.35962 -12.04178 -11.94621 -11.83475 -11.78987 -11.66931 -11.51107 -11.29049 -11.10330 -10.97467 -10.63598 -9.94438 -9.32549 -8.03536 -5.37740 1.29529 1.39234 1.45373 1.65149 2.23828 2.45966 3.26514 3.48698 3.67905 3.73226 3.77373 3.87359 3.95607 4.18952 4.22785 4.27563 4.33047 4.41450 4.54799 4.65828 4.71406 4.78445 4.83556 4.88566 4.92764 4.95118 4.97189 5.03233 5.04602 5.16723 5.20857 5.22331 5.28766 5.32702 5.41652 5.52294 5.55343 5.66865 5.81049 6.21493 6.55769 7.05898 7.26464 7.81934 8.01435 9.17770 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.005529 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.352713 B = 5062.888024 C = 6360.469669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.068 4.068 5 H 0.069 0.931 6 C -0.153 4.153 7 C -0.143 4.143 8 C 0.510 3.490 9 O -0.568 6.568 10 N -0.713 5.713 11 C 0.128 3.872 12 H 0.093 0.907 13 C -0.158 4.158 14 C 0.148 3.852 15 H 0.064 0.936 16 N -0.733 5.733 17 C -0.232 4.232 18 H 0.060 0.940 19 C -0.061 4.061 20 N -0.982 5.982 21 Si 0.946 3.054 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.239 1.239 25 C -0.157 4.157 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.405 0.595 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.047 0.953 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -17.194 -9.382 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.087 4.087 5 H 0.088 0.912 6 C -0.210 4.210 7 C -0.183 4.183 8 C 0.298 3.702 9 O -0.447 6.447 10 N -0.364 5.364 11 C 0.022 3.978 12 H 0.111 0.889 13 C -0.198 4.198 14 C 0.038 3.962 15 H 0.082 0.918 16 N -0.376 5.376 17 C -0.363 4.363 18 H 0.078 0.922 19 C -0.253 4.253 20 N -0.632 5.632 21 Si 0.773 3.227 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.163 1.163 25 C -0.196 4.196 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.241 0.759 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.426 -17.715 -9.318 21.022 hybrid contribution -0.958 0.493 0.582 1.225 sum -7.384 -17.222 -8.736 20.674 Atomic orbital electron populations 1.21772 0.95281 1.01915 1.01933 1.21557 0.96211 0.96374 1.02088 1.21668 0.93124 0.97646 1.02597 1.20840 0.95670 0.93379 0.98840 0.91244 1.21964 1.01403 1.00964 0.96649 1.21917 0.90389 1.00538 1.05468 1.21148 0.91119 0.83077 0.74812 1.90617 1.71298 1.31653 1.51168 1.46051 1.07398 1.09216 1.73785 1.21785 0.79742 0.98747 0.97487 0.88944 1.23950 1.02098 0.94662 0.99093 1.21431 0.89307 0.92772 0.92690 0.91825 1.42517 1.10959 1.12159 1.71923 1.19075 0.97766 0.89205 1.30290 0.92226 1.25470 1.01302 0.97403 1.01099 1.69871 1.29553 1.16312 1.47472 0.85564 0.79644 0.78603 0.78869 1.21492 1.21953 1.16347 1.23813 1.01907 0.96603 0.97312 0.92831 0.92457 0.92309 0.92035 0.92039 0.91843 0.90958 0.93383 0.91691 0.93285 0.88847 0.86695 0.75924 0.86461 0.91695 0.80021 0.93331 0.93452 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.95 5.69 30.59 0.17 -1.78 16 3 C -0.11 -1.93 4.68 30.59 0.14 -1.79 16 4 C -0.07 -1.48 2.04 -10.80 -0.02 -1.50 16 5 H 0.07 1.62 7.96 -2.38 -0.02 1.60 16 6 C -0.15 -3.67 8.69 71.98 0.63 -3.04 16 7 C -0.14 -3.31 5.17 29.85 0.15 -3.16 16 8 C 0.51 14.99 7.55 87.66 0.66 15.65 16 9 O -0.57 -19.55 13.90 -3.04 -0.04 -19.59 16 10 N -0.71 -20.93 4.34 -440.03 -1.91 -22.84 16 11 C 0.13 3.66 4.00 45.52 0.18 3.84 16 12 H 0.09 2.51 8.05 -2.38 -0.02 2.49 16 13 C -0.16 -4.52 7.57 31.12 0.24 -4.28 16 14 C 0.15 5.28 4.55 45.52 0.21 5.49 16 15 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 16 N -0.73 -32.45 4.82 -320.44 -1.54 -33.99 16 17 C -0.23 -12.76 10.46 84.04 0.88 -11.88 16 18 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 19 C -0.06 -3.49 5.50 84.87 0.47 -3.02 16 20 N -0.98 -61.54 13.97 21.65 0.30 -61.24 16 21 Si 0.95 43.17 27.74 68.60 1.90 45.07 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.24 -9.14 6.52 99.48 0.65 -8.49 16 25 C -0.16 -4.80 7.62 31.13 0.24 -4.57 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.00 6.56 -2.39 -0.02 0.98 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.36 6.56 -2.38 -0.02 1.35 16 35 H 0.05 1.45 5.95 -2.39 -0.01 1.43 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.40 11.93 7.81 -92.71 -0.72 11.21 16 39 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 41 H 0.37 15.48 4.22 -92.70 -0.39 15.09 16 42 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -66.65 346.36 3.17 -63.48 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.20 Total: 40.49 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 4.66 Total: -11.38 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -3.15 Total: -118.06 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.59 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.90 Total: 45.07 kcal Total: -66.65 3.17 -63.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266672133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.828 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds