Wall clock time and date at job start Mon Mar 30 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47106 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99893 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00005 * 179.97438 * 5 4 3 8 8 C 1.47016 * 125.64952 * 0.02946 * 7 5 4 9 9 C 1.54324 * 107.27410 * 181.02011 * 8 7 5 10 10 C 1.55163 * 102.93806 * 22.19271 * 9 8 7 11 11 H 1.08999 * 110.99847 * 82.61470 * 10 9 8 12 12 C 1.52996 * 110.99953 * 206.42478 * 10 9 8 13 13 N 1.46500 * 109.47492 * 293.54466 * 12 10 9 14 14 C 1.46498 * 119.99877 * 90.00036 * 13 12 10 15 15 C 1.36938 * 120.00400 * 270.00684 * 13 12 10 16 16 H 1.08009 * 119.99549 * 23.31322 * 15 13 12 17 17 C 1.38808 * 120.00237 * 203.31576 * 15 13 12 18 18 N 1.31615 * 119.99789 * 14.40706 * 17 15 13 19 19 Si 1.86798 * 120.00076 * 194.40648 * 17 15 13 20 20 H 1.48504 * 109.47099 * 60.00084 * 19 17 15 21 21 H 1.48504 * 109.47348 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47245 * 300.00050 * 19 17 15 23 23 C 1.47424 * 125.64615 * 179.71760 * 7 5 4 24 24 H 1.09002 * 109.46876 * 59.99932 * 1 2 3 25 25 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 300.00102 * 1 2 3 27 27 H 1.09000 * 109.47508 * 240.00546 * 2 1 3 28 28 H 1.08997 * 109.47359 * 119.99546 * 2 1 3 29 29 H 1.09001 * 109.47281 * 60.00014 * 3 2 1 30 30 H 1.09002 * 109.47362 * 299.99770 * 3 2 1 31 31 H 1.09001 * 109.47092 * 59.99898 * 4 3 2 32 32 H 1.09005 * 109.47323 * 299.99838 * 4 3 2 33 33 H 1.08999 * 109.88273 * 300.43971 * 8 7 5 34 34 H 1.09000 * 109.88142 * 61.44762 * 8 7 5 35 35 H 1.08993 * 110.72059 * 140.55672 * 9 8 7 36 36 H 1.08998 * 110.71650 * 263.83349 * 9 8 7 37 37 H 1.09001 * 109.47488 * 53.55272 * 12 10 9 38 38 H 1.08999 * 109.47080 * 173.55054 * 12 10 9 39 39 H 1.08998 * 109.47119 * 95.18794 * 14 13 12 40 40 H 1.09004 * 109.47407 * 215.19034 * 14 13 12 41 41 H 1.09000 * 109.47316 * 335.18924 * 14 13 12 42 42 H 0.97002 * 120.00009 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.36762 * 274.74966 * 23 7 5 44 44 H 1.09006 * 110.36716 * 37.07566 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 -0.0013 6 8 3.2842 3.7853 -0.0008 7 7 5.3974 3.1097 -0.0014 8 6 6.4581 2.0917 -0.0015 9 6 7.8090 2.8375 0.0246 10 6 7.4292 4.2237 0.6091 11 1 7.3816 4.1890 1.6975 12 6 8.4069 5.3030 0.1401 13 7 9.7309 5.0443 0.7112 14 6 10.6901 4.2068 -0.0131 15 6 10.0720 5.5851 1.9222 16 1 9.3008 5.8693 2.6230 17 6 11.4086 5.7681 2.2489 18 7 12.3308 5.6950 1.3128 19 14 11.8983 6.1180 4.0173 20 1 11.4686 4.9900 4.8824 21 1 13.3730 6.2718 4.1014 22 1 11.2428 7.3697 4.4741 23 6 6.0232 4.4445 -0.0079 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9329 0.9288 -0.8909 32 1 3.9337 0.9286 0.8892 33 1 6.3661 1.4603 0.8822 34 1 6.3863 1.4817 -0.9019 35 1 8.5191 2.3263 0.6745 36 1 8.2118 2.9410 -0.9829 37 1 8.4711 5.2872 -0.9479 38 1 8.0542 6.2805 0.4690 39 1 11.3565 4.8405 -0.5983 40 1 11.2749 3.6247 0.6993 41 1 10.1528 3.5318 -0.6793 42 1 13.2649 5.8225 1.5412 43 1 6.1085 4.8185 -1.0281 44 1 5.4454 5.1374 0.6040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267626110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:18 Heat of formation + Delta-G solvation = -34.890378 kcal Electronic energy + Delta-G solvation = -20716.911379 eV Core-core repulsion = 17669.101923 eV Total energy + Delta-G solvation = -3047.809456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.98875 -37.75120 -35.53733 -35.28833 -32.36390 -30.91222 -30.10738 -29.14000 -26.20890 -25.74595 -24.37782 -22.76496 -21.36791 -21.07883 -19.79953 -18.99609 -17.00029 -16.58375 -16.32596 -15.77669 -15.11115 -14.87125 -14.34795 -13.97759 -13.65894 -13.59456 -13.25509 -13.06072 -12.87370 -12.62796 -12.33098 -12.06513 -11.93952 -11.53339 -11.44125 -11.29769 -11.21153 -11.02153 -10.88916 -10.79235 -10.72564 -10.47727 -10.34611 -10.02649 -9.88384 -9.81683 -9.72547 -8.55907 -8.50720 -6.72968 -5.72157 -3.19076 2.69789 3.08213 3.38829 3.44293 3.45265 4.42442 4.50331 4.66142 4.71536 4.87317 4.89975 5.04241 5.09496 5.20097 5.28783 5.38488 5.40843 5.47716 5.55713 5.59153 5.61379 5.69871 5.76460 5.87793 5.89755 5.98238 6.03349 6.10733 6.15851 6.23393 6.27703 6.42334 6.54557 6.74424 6.74629 6.89068 7.34053 7.63274 7.72182 7.80827 8.23529 8.40522 9.24145 9.87807 10.36802 11.32260 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037765 B = 0.003223 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.252123 B = 8686.526950 C = 8829.894308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.136 4.136 5 C 0.523 3.477 6 O -0.549 6.549 7 N -0.617 5.617 8 C 0.099 3.901 9 C -0.116 4.116 10 C -0.117 4.117 11 H 0.082 0.918 12 C 0.162 3.838 13 N -0.599 5.599 14 C 0.161 3.839 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.907 5.907 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.108 3.892 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.002 0.998 42 H 0.253 0.747 43 H 0.065 0.935 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 -12.023 -4.369 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.176 4.176 5 C 0.312 3.688 6 O -0.427 6.427 7 N -0.351 5.351 8 C -0.024 4.024 9 C -0.154 4.154 10 C -0.139 4.139 11 H 0.100 0.900 12 C 0.034 3.966 13 N -0.321 5.321 14 C 0.016 3.984 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.551 5.551 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.209 1.209 23 C -0.014 4.014 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.090 -11.528 -4.367 20.270 hybrid contribution 0.536 0.077 0.999 1.136 sum -15.554 -11.451 -3.368 19.606 Atomic orbital electron populations 1.21760 0.95760 1.01440 1.02023 1.21551 0.96077 0.96677 1.01962 1.21381 0.92845 0.96472 1.03583 1.21675 0.97811 0.93938 1.04167 1.20398 0.80606 0.91686 0.76074 1.90687 1.54481 1.46810 1.50723 1.48656 1.04979 1.08872 1.72634 1.22140 0.88029 0.91276 1.00929 1.22619 0.94437 0.96304 1.02060 1.23231 0.93018 0.96865 1.00810 0.90007 1.20611 0.85860 0.94691 0.95443 1.43830 1.10547 1.56296 1.21438 1.20835 0.91037 0.92114 0.94420 1.19123 0.91223 1.36406 0.91784 0.91566 1.25008 0.96577 1.00454 0.97577 1.70061 1.00324 1.54042 1.30720 0.86365 0.77206 0.78256 0.84883 1.21149 1.21681 1.20934 1.22390 0.93885 0.84252 1.00901 0.92683 0.92844 0.92665 0.92025 0.91990 0.91238 0.91280 0.89166 0.89100 0.91747 0.91879 0.89802 0.90866 0.94354 0.93161 0.95249 0.94418 0.97952 0.93737 0.91657 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.10 -1.02 4.50 -26.73 -0.12 -1.14 16 4 C -0.14 -1.35 4.89 -27.88 -0.14 -1.48 16 5 C 0.52 7.45 7.85 -10.98 -0.09 7.36 16 6 O -0.55 -9.81 16.24 5.55 0.09 -9.72 16 7 N -0.62 -8.62 3.32 -170.38 -0.57 -9.19 16 8 C 0.10 1.16 6.48 -3.07 -0.02 1.14 16 9 C -0.12 -1.65 5.02 -24.89 -0.13 -1.78 16 10 C -0.12 -1.93 3.31 -88.35 -0.29 -2.22 16 11 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 12 C 0.16 3.17 5.16 -4.04 -0.02 3.14 16 13 N -0.60 -14.44 2.84 -181.12 -0.51 -14.96 16 14 C 0.16 3.77 8.61 59.85 0.52 4.28 16 15 C -0.26 -6.88 9.64 -15.06 -0.15 -7.03 16 16 H 0.07 1.75 7.87 -52.48 -0.41 1.34 16 17 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 18 N -0.91 -26.21 10.81 55.49 0.60 -25.61 16 19 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.11 1.64 6.38 -2.41 -0.02 1.63 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.03 7.15 -51.93 -0.37 0.66 16 37 H 0.04 0.70 8.04 -51.93 -0.42 0.29 16 38 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.03 0.76 7.32 -51.93 -0.38 0.38 16 40 H 0.04 0.95 7.40 -51.93 -0.38 0.57 16 41 H 0.00 0.04 6.16 -51.93 -0.32 -0.28 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 44 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -30.98 349.02 -8.65 -39.63 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -8.17 Total: -4.19 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.32 Total: 2.09 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.48 Total: -49.75 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.98 -8.65 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267626110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.741 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds