Wall clock time and date at job start Mon Mar 30 2020 00:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47106 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99893 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00005 * 179.97438 * 5 4 3 8 8 C 1.47016 * 125.64952 * 0.02946 * 7 5 4 9 9 C 1.54324 * 107.27410 * 181.02011 * 8 7 5 10 10 C 1.55163 * 102.93806 * 22.19271 * 9 8 7 11 11 H 1.08999 * 110.99847 * 82.61470 * 10 9 8 12 12 C 1.52996 * 110.99953 * 206.42478 * 10 9 8 13 13 N 1.46500 * 109.47492 * 293.54466 * 12 10 9 14 14 C 1.46498 * 119.99877 * 90.00036 * 13 12 10 15 15 C 1.36938 * 120.00400 * 270.00684 * 13 12 10 16 16 H 1.08009 * 119.99549 * 23.31322 * 15 13 12 17 17 C 1.38808 * 120.00237 * 203.31576 * 15 13 12 18 18 N 1.31615 * 119.99789 * 14.40706 * 17 15 13 19 19 Si 1.86798 * 120.00076 * 194.40648 * 17 15 13 20 20 H 1.48504 * 109.47099 * 60.00084 * 19 17 15 21 21 H 1.48504 * 109.47348 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47245 * 300.00050 * 19 17 15 23 23 C 1.47424 * 125.64615 * 179.71760 * 7 5 4 24 24 H 1.09002 * 109.46876 * 59.99932 * 1 2 3 25 25 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47092 * 300.00102 * 1 2 3 27 27 H 1.09000 * 109.47508 * 240.00546 * 2 1 3 28 28 H 1.08997 * 109.47359 * 119.99546 * 2 1 3 29 29 H 1.09001 * 109.47281 * 60.00014 * 3 2 1 30 30 H 1.09002 * 109.47362 * 299.99770 * 3 2 1 31 31 H 1.09001 * 109.47092 * 59.99898 * 4 3 2 32 32 H 1.09005 * 109.47323 * 299.99838 * 4 3 2 33 33 H 1.08999 * 109.88273 * 300.43971 * 8 7 5 34 34 H 1.09000 * 109.88142 * 61.44762 * 8 7 5 35 35 H 1.08993 * 110.72059 * 140.55672 * 9 8 7 36 36 H 1.08998 * 110.71650 * 263.83349 * 9 8 7 37 37 H 1.09001 * 109.47488 * 53.55272 * 12 10 9 38 38 H 1.08999 * 109.47080 * 173.55054 * 12 10 9 39 39 H 1.08998 * 109.47119 * 95.18794 * 14 13 12 40 40 H 1.09004 * 109.47407 * 215.19034 * 14 13 12 41 41 H 1.09000 * 109.47316 * 335.18924 * 14 13 12 42 42 H 0.97002 * 120.00009 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.36762 * 274.74966 * 23 7 5 44 44 H 1.09006 * 110.36716 * 37.07566 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 -0.0013 6 8 3.2842 3.7853 -0.0008 7 7 5.3974 3.1097 -0.0014 8 6 6.4581 2.0917 -0.0015 9 6 7.8090 2.8375 0.0246 10 6 7.4292 4.2237 0.6091 11 1 7.3816 4.1890 1.6975 12 6 8.4069 5.3030 0.1401 13 7 9.7309 5.0443 0.7112 14 6 10.6901 4.2068 -0.0131 15 6 10.0720 5.5851 1.9222 16 1 9.3008 5.8693 2.6230 17 6 11.4086 5.7681 2.2489 18 7 12.3308 5.6950 1.3128 19 14 11.8983 6.1180 4.0173 20 1 11.4686 4.9900 4.8824 21 1 13.3730 6.2718 4.1014 22 1 11.2428 7.3697 4.4741 23 6 6.0232 4.4445 -0.0079 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9329 0.9288 -0.8909 32 1 3.9337 0.9286 0.8892 33 1 6.3661 1.4603 0.8822 34 1 6.3863 1.4817 -0.9019 35 1 8.5191 2.3263 0.6745 36 1 8.2118 2.9410 -0.9829 37 1 8.4711 5.2872 -0.9479 38 1 8.0542 6.2805 0.4690 39 1 11.3565 4.8405 -0.5983 40 1 11.2749 3.6247 0.6993 41 1 10.1528 3.5318 -0.6793 42 1 13.2649 5.8225 1.5412 43 1 6.1085 4.8185 -1.0281 44 1 5.4454 5.1374 0.6040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267626110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:18 Heat of formation + Delta-G solvation = -52.278533 kcal Electronic energy + Delta-G solvation = -20717.665386 eV Core-core repulsion = 17669.101923 eV Total energy + Delta-G solvation = -3048.563463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11746 -39.02289 -37.08377 -36.20451 -33.97247 -32.31411 -31.15930 -30.36528 -27.94148 -27.35236 -25.49015 -23.81740 -22.92588 -21.91205 -21.19799 -20.07016 -18.61225 -18.00326 -17.43110 -16.90650 -16.61221 -16.07590 -15.57943 -15.44921 -14.99885 -14.69810 -14.49836 -14.27418 -14.03301 -13.77393 -13.61516 -13.36145 -13.13453 -12.87672 -12.76002 -12.58116 -12.49550 -12.24406 -12.19819 -12.05703 -11.95573 -11.85512 -11.72141 -11.60652 -11.43755 -11.36392 -10.88709 -10.59637 -9.64586 -8.72601 -7.80395 -5.29169 1.47050 1.48345 1.55096 1.62831 2.02455 2.52187 3.31392 3.42530 3.68912 3.75908 3.94556 3.95462 4.05902 4.15131 4.35351 4.36842 4.44890 4.47965 4.60431 4.61702 4.67029 4.76925 4.84845 4.87040 4.94085 4.97341 5.01114 5.06146 5.11636 5.13118 5.25697 5.30593 5.32677 5.38939 5.39986 5.50661 5.51478 5.66128 5.76647 6.35587 6.56882 7.14977 7.18671 7.91529 8.33997 9.21497 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037765 B = 0.003223 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.252123 B = 8686.526950 C = 8829.894308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.127 4.127 5 C 0.516 3.484 6 O -0.595 6.595 7 N -0.620 5.620 8 C 0.105 3.895 9 C -0.113 4.113 10 C -0.107 4.107 11 H 0.060 0.940 12 C 0.161 3.839 13 N -0.614 5.614 14 C 0.176 3.824 15 C -0.260 4.260 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.279 1.279 23 C 0.114 3.886 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.037 0.963 39 H -0.001 1.001 40 H 0.012 0.988 41 H 0.043 0.957 42 H 0.248 0.752 43 H 0.072 0.928 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 -14.243 -4.596 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.166 4.166 5 C 0.307 3.693 6 O -0.476 6.476 7 N -0.353 5.353 8 C -0.017 4.017 9 C -0.151 4.151 10 C -0.129 4.129 11 H 0.079 0.921 12 C 0.035 3.965 13 N -0.337 5.337 14 C 0.031 3.969 15 C -0.391 4.391 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.584 5.584 19 Si 0.792 3.208 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.205 1.205 23 C -0.009 4.009 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.099 -13.772 -4.597 22.432 hybrid contribution 0.775 0.807 1.030 1.521 sum -16.324 -12.966 -3.567 21.149 Atomic orbital electron populations 1.21787 0.95767 1.02109 1.01602 1.21518 0.96085 0.94998 1.03062 1.21351 0.93035 0.97781 1.01946 1.21728 0.97525 0.91008 1.06342 1.21240 0.80094 0.93093 0.74854 1.90669 1.55555 1.48595 1.52791 1.48753 1.05571 1.08676 1.72304 1.22240 0.85464 0.90580 1.03444 1.22568 0.95951 0.94737 1.01807 1.22870 0.93041 0.97394 0.99568 0.92102 1.20731 0.84408 0.95271 0.96136 1.44047 1.12085 1.56461 1.21067 1.20594 0.90782 0.91718 0.93799 1.19411 0.91286 1.35425 0.92937 0.91706 1.25726 0.96726 1.01250 1.01044 1.70220 1.00185 1.55696 1.32277 0.85396 0.76402 0.78220 0.80749 1.20497 1.22086 1.20458 1.22182 0.92819 0.85191 1.00723 0.93052 0.91598 0.93252 0.90702 0.90993 0.93164 0.92815 0.86478 0.87010 0.89947 0.88657 0.90604 0.90288 0.92808 0.94401 0.98295 0.96949 0.93846 0.94322 0.91002 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.46 5.93 30.60 0.18 -1.27 16 3 C -0.10 -1.83 4.50 30.60 0.14 -1.70 16 4 C -0.13 -2.11 4.89 29.85 0.15 -1.96 16 5 C 0.52 13.76 7.85 87.66 0.69 14.45 16 6 O -0.59 -21.18 16.24 -3.04 -0.05 -21.23 16 7 N -0.62 -15.88 3.32 -811.35 -2.70 -18.57 16 8 C 0.10 2.05 6.48 86.73 0.56 2.61 16 9 C -0.11 -2.90 5.02 31.78 0.16 -2.74 16 10 C -0.11 -3.41 3.31 -9.32 -0.03 -3.44 16 11 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 12 C 0.16 6.21 5.16 86.38 0.45 6.66 16 13 N -0.61 -29.59 2.84 -726.94 -2.06 -31.65 16 14 C 0.18 8.23 8.61 127.77 1.10 9.33 16 15 C -0.26 -14.10 9.64 84.03 0.81 -13.29 16 16 H 0.07 3.46 7.87 -2.91 -0.02 3.43 16 17 C -0.05 -2.92 5.07 84.86 0.43 -2.49 16 18 N -0.94 -55.14 10.81 21.65 0.23 -54.91 16 19 Si 0.96 45.00 29.58 68.60 2.03 47.03 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 C 0.11 3.35 6.38 86.93 0.55 3.91 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 37 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 38 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 39 H 0.00 -0.07 7.32 -2.39 -0.02 -0.08 16 40 H 0.01 0.61 7.40 -2.38 -0.02 0.59 16 41 H 0.04 1.63 6.16 -2.39 -0.01 1.62 16 42 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 43 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 44 H 0.06 1.85 8.03 -2.38 -0.02 1.83 16 Total: -1.00 -68.31 349.02 4.28 -64.03 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 0.93 Total: 6.43 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.90 Total: 8.87 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.53 Total: -105.13 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -68.31 4.28 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267626110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.750 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds