Wall clock time and date at job start Mon Mar 30 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 305.00180 * 4 3 2 6 6 C 1.53006 * 109.47164 * 65.00128 * 4 3 2 7 7 C 1.52999 * 109.47592 * 184.99834 * 4 3 2 8 8 C 1.50696 * 109.47750 * 174.99892 * 7 4 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00246 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47126 * 180.02562 * 11 10 8 13 13 C 1.53947 * 113.73870 * 273.73928 * 12 11 10 14 14 N 1.47813 * 86.03805 * 222.08084 * 13 12 11 15 15 C 1.36932 * 134.46281 * 204.64595 * 14 13 12 16 16 H 1.08002 * 120.00545 * 179.87099 * 15 14 13 17 17 C 1.38816 * 119.99633 * 359.86350 * 15 14 13 18 18 N 1.31618 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47253 * 60.00041 * 19 17 15 21 21 H 1.48500 * 109.47495 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46951 * 299.99941 * 19 17 15 23 23 C 1.47582 * 91.04766 * 24.54744 * 14 13 12 24 24 H 1.08998 * 109.47097 * 59.99611 * 1 2 3 25 25 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47272 * 299.99952 * 1 2 3 27 27 H 1.09001 * 109.47272 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47097 * 120.00389 * 2 1 3 29 29 H 1.09001 * 109.47456 * 59.99861 * 3 2 1 30 30 H 1.08998 * 109.47375 * 300.00219 * 3 2 1 31 31 H 1.09000 * 109.47050 * 59.99996 * 6 4 3 32 32 H 1.09001 * 109.46801 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46998 * 299.99705 * 6 4 3 34 34 H 1.09002 * 109.47016 * 295.00471 * 7 4 3 35 35 H 1.09000 * 109.46709 * 55.00035 * 7 4 3 36 36 H 0.96996 * 119.99957 * 0.02562 * 10 8 7 37 37 H 1.09011 * 109.46658 * 299.99762 * 11 10 8 38 38 H 1.08990 * 109.47208 * 59.99531 * 11 10 8 39 39 H 1.09006 * 112.94430 * 45.32556 * 12 11 10 40 40 H 1.08994 * 113.77387 * 336.34731 * 13 12 11 41 41 H 1.09007 * 113.76833 * 107.74520 * 13 12 11 42 42 H 0.96999 * 119.99671 * 179.97438 * 18 17 15 43 43 H 1.08998 * 113.77316 * 221.14959 * 23 14 13 44 44 H 1.09006 * 113.76817 * 89.75400 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8326 -1.3065 7 6 4.0800 2.8794 0.1263 8 6 5.5818 2.8705 0.2505 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3742 11 6 7.7148 4.0229 0.4944 12 6 8.2247 5.4598 0.6215 13 6 8.4605 6.1556 -0.7314 14 7 9.7011 6.6849 -0.1267 15 6 10.4901 7.7797 -0.3590 16 1 11.3711 7.9479 0.2426 17 6 10.1575 8.6732 -1.3679 18 7 9.0837 8.4684 -2.1008 19 14 11.2341 10.1664 -1.6854 20 1 12.6062 9.7214 -2.0382 21 1 10.6660 10.9570 -2.8067 22 1 11.2857 11.0083 -0.4631 23 6 9.7466 5.5614 0.8292 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7176 1.4220 -2.1485 32 1 5.1706 0.8322 -1.3057 33 1 3.7173 -0.1912 -1.3960 34 1 3.7920 3.4459 -0.7592 35 1 3.6450 3.3432 1.0117 36 1 5.7724 4.8731 0.3837 37 1 8.0031 3.4558 1.3796 38 1 8.1495 3.5597 -0.3913 39 1 7.6447 6.0557 1.3263 40 1 8.6340 5.4649 -1.5564 41 1 7.7224 6.9229 -0.9653 42 1 8.8511 9.0930 -2.8055 43 1 10.0336 5.8549 1.8390 44 1 10.2987 4.6955 0.4636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267677228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:01 Heat of formation + Delta-G solvation = -15.968452 kcal Electronic energy + Delta-G solvation = -20234.504926 eV Core-core repulsion = 17187.515986 eV Total energy + Delta-G solvation = -3046.988940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80130 -38.08577 -36.81080 -34.33243 -32.85272 -32.16696 -29.35450 -27.72869 -26.74781 -25.52419 -24.77668 -22.48376 -21.74271 -20.49833 -19.93919 -18.89909 -16.93523 -16.62142 -15.95263 -15.71308 -15.37343 -14.89400 -14.45597 -14.15604 -13.99242 -13.62524 -13.54032 -13.09217 -12.99009 -12.44281 -12.42042 -12.00966 -11.82653 -11.66376 -11.39445 -11.31859 -11.10917 -10.99564 -10.84002 -10.73109 -10.70462 -10.60708 -10.55881 -9.98928 -9.75023 -9.54488 -9.37312 -8.80456 -8.75146 -6.88537 -5.77521 -3.09593 2.82112 3.38733 3.40359 3.43368 3.44422 4.44968 4.55020 4.65901 4.70479 4.95822 4.99258 5.09815 5.19397 5.31642 5.34301 5.36490 5.41926 5.51515 5.53842 5.60512 5.67426 5.69483 5.75207 5.81984 5.85077 5.97821 5.99747 6.05744 6.11730 6.25933 6.30898 6.36456 6.44457 6.58563 6.66785 6.79026 7.21080 7.35157 7.54089 7.72897 7.97471 8.42863 9.04118 9.70256 10.59608 11.39703 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.002799 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.045770 B =10001.027328 C =10366.680403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.076 0.924 6 C -0.155 4.155 7 C -0.139 4.139 8 C 0.509 3.491 9 O -0.545 6.545 10 N -0.724 5.724 11 C 0.130 3.870 12 C -0.153 4.153 13 C 0.169 3.831 14 N -0.613 5.613 15 C -0.223 4.223 16 H 0.079 0.921 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.128 3.872 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.401 0.599 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.045 0.955 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.614 -13.199 4.973 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.212 4.212 7 C -0.179 4.179 8 C 0.295 3.705 9 O -0.424 6.424 10 N -0.375 5.375 11 C 0.006 3.994 12 C -0.173 4.173 13 C 0.044 3.956 14 N -0.340 5.340 15 C -0.351 4.351 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.001 3.999 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -15.060 -13.633 4.791 20.871 hybrid contribution 0.437 1.299 -0.335 1.410 sum -14.623 -12.335 4.456 19.643 Atomic orbital electron populations 1.21783 0.96125 1.01411 1.01695 1.21572 0.95479 0.97071 1.02256 1.21688 0.94834 0.96872 1.01951 1.20886 0.94267 0.94375 0.99836 0.90524 1.22000 1.03257 1.00004 0.95904 1.21775 0.92421 0.99571 1.04150 1.20675 0.90037 0.83761 0.75998 1.90648 1.70543 1.30967 1.50197 1.46123 1.08481 1.08784 1.74122 1.21420 0.78807 0.97765 1.01423 1.23792 0.97676 0.93548 1.02271 1.22345 0.89221 0.93820 0.90222 1.45985 1.28384 1.21971 1.37622 1.18990 1.04721 0.97494 1.13849 0.90309 1.24788 0.98322 0.99286 0.98170 1.69802 1.26122 1.37778 1.23305 0.86190 0.79632 0.82399 0.77482 1.21184 1.21553 1.21081 1.22489 0.91928 0.91074 0.94374 0.92818 0.92968 0.92877 0.91685 0.92095 0.92065 0.91911 0.93410 0.90608 0.92933 0.88914 0.89134 0.76460 0.92122 0.91546 0.89278 0.95542 0.91011 0.93618 0.93697 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.95 5.69 -26.73 -0.15 -1.10 16 3 C -0.12 -0.91 4.68 -26.73 -0.13 -1.03 16 4 C -0.07 -0.73 2.04 -90.62 -0.18 -0.92 16 5 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 6 C -0.15 -1.67 8.69 37.16 0.32 -1.35 16 7 C -0.14 -1.35 5.17 -27.89 -0.14 -1.50 16 8 C 0.51 6.90 7.55 -10.99 -0.08 6.82 16 9 O -0.55 -9.27 13.97 5.55 0.08 -9.19 16 10 N -0.72 -9.70 5.56 -60.30 -0.33 -10.03 16 11 C 0.13 2.03 5.51 -4.04 -0.02 2.00 16 12 C -0.15 -2.73 3.93 -89.70 -0.35 -3.08 16 13 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 14 N -0.61 -15.79 3.70 -177.68 -0.66 -16.45 16 15 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.92 -27.33 11.39 55.49 0.63 -26.70 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.59 8.51 -2.97 -0.03 2.57 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 1.03 5.95 -51.93 -0.31 0.72 16 33 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 4.59 8.47 -40.82 -0.35 4.24 16 37 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 38 H 0.07 1.14 7.88 -51.93 -0.41 0.73 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16 41 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -32.23 350.86 -8.68 -40.91 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.98 Total: 0.19 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.68 Total: -1.17 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.36 Total: -53.19 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.23 -8.68 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267677228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.940 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds