Wall clock time and date at job start Mon Mar 30 2020 00:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 C 1.52997 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47140 * 305.00180 * 4 3 2 6 6 C 1.53006 * 109.47164 * 65.00128 * 4 3 2 7 7 C 1.52999 * 109.47592 * 184.99834 * 4 3 2 8 8 C 1.50696 * 109.47750 * 174.99892 * 7 4 3 9 9 O 1.21286 * 119.99754 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00246 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99830 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47126 * 180.02562 * 11 10 8 13 13 C 1.53947 * 113.73870 * 273.73928 * 12 11 10 14 14 N 1.47813 * 86.03805 * 222.08084 * 13 12 11 15 15 C 1.36932 * 134.46281 * 204.64595 * 14 13 12 16 16 H 1.08002 * 120.00545 * 179.87099 * 15 14 13 17 17 C 1.38816 * 119.99633 * 359.86350 * 15 14 13 18 18 N 1.31618 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47253 * 60.00041 * 19 17 15 21 21 H 1.48500 * 109.47495 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46951 * 299.99941 * 19 17 15 23 23 C 1.47582 * 91.04766 * 24.54744 * 14 13 12 24 24 H 1.08998 * 109.47097 * 59.99611 * 1 2 3 25 25 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47272 * 299.99952 * 1 2 3 27 27 H 1.09001 * 109.47272 * 240.00047 * 2 1 3 28 28 H 1.08998 * 109.47097 * 120.00389 * 2 1 3 29 29 H 1.09001 * 109.47456 * 59.99861 * 3 2 1 30 30 H 1.08998 * 109.47375 * 300.00219 * 3 2 1 31 31 H 1.09000 * 109.47050 * 59.99996 * 6 4 3 32 32 H 1.09001 * 109.46801 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.46998 * 299.99705 * 6 4 3 34 34 H 1.09002 * 109.47016 * 295.00471 * 7 4 3 35 35 H 1.09000 * 109.46709 * 55.00035 * 7 4 3 36 36 H 0.96996 * 119.99957 * 0.02562 * 10 8 7 37 37 H 1.09011 * 109.46658 * 299.99762 * 11 10 8 38 38 H 1.08990 * 109.47208 * 59.99531 * 11 10 8 39 39 H 1.09006 * 112.94430 * 45.32556 * 12 11 10 40 40 H 1.08994 * 113.77387 * 336.34731 * 13 12 11 41 41 H 1.09007 * 113.76833 * 107.74520 * 13 12 11 42 42 H 0.96999 * 119.99671 * 179.97438 * 18 17 15 43 43 H 1.08998 * 113.77316 * 221.14959 * 23 14 13 44 44 H 1.09006 * 113.76817 * 89.75400 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9329 0.8531 0.8427 6 6 4.0805 0.8326 -1.3065 7 6 4.0800 2.8794 0.1263 8 6 5.5818 2.8705 0.2505 9 8 6.1850 1.8183 0.2391 10 7 6.2548 4.0317 0.3742 11 6 7.7148 4.0229 0.4944 12 6 8.2247 5.4598 0.6215 13 6 8.4605 6.1556 -0.7314 14 7 9.7011 6.6849 -0.1267 15 6 10.4901 7.7797 -0.3590 16 1 11.3711 7.9479 0.2426 17 6 10.1575 8.6732 -1.3679 18 7 9.0837 8.4684 -2.1008 19 14 11.2341 10.1664 -1.6854 20 1 12.6062 9.7214 -2.0382 21 1 10.6660 10.9570 -2.8067 22 1 11.2857 11.0083 -0.4631 23 6 9.7466 5.5614 0.8292 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.7176 1.4220 -2.1485 32 1 5.1706 0.8322 -1.3057 33 1 3.7173 -0.1912 -1.3960 34 1 3.7920 3.4459 -0.7592 35 1 3.6450 3.3432 1.0117 36 1 5.7724 4.8731 0.3837 37 1 8.0031 3.4558 1.3796 38 1 8.1495 3.5597 -0.3913 39 1 7.6447 6.0557 1.3263 40 1 8.6340 5.4649 -1.5564 41 1 7.7224 6.9229 -0.9653 42 1 8.8511 9.0930 -2.8055 43 1 10.0336 5.8549 1.8390 44 1 10.2987 4.6955 0.4636 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267677228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:01 Heat of formation + Delta-G solvation = -35.955744 kcal Electronic energy + Delta-G solvation = -20235.371640 eV Core-core repulsion = 17187.515986 eV Total energy + Delta-G solvation = -3047.855654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.93139 -39.70080 -37.62434 -35.65474 -34.16819 -33.52660 -30.84076 -29.01338 -27.47250 -27.04130 -26.52933 -23.90076 -22.79749 -21.51669 -20.90517 -20.35085 -18.75816 -17.87169 -17.10733 -16.99444 -16.63998 -16.15567 -15.77854 -15.47480 -15.16722 -14.79685 -14.53192 -14.37099 -14.09721 -13.95046 -13.31667 -13.15160 -13.11186 -12.87654 -12.76790 -12.60329 -12.51223 -12.30374 -12.23552 -11.83412 -11.77336 -11.63307 -11.55720 -11.44186 -11.27131 -11.23092 -10.87084 -10.58208 -9.95812 -8.92798 -7.91284 -5.24661 1.45108 1.48570 1.54640 1.76086 2.32175 2.47466 3.29418 3.39248 3.71446 3.84838 3.87070 4.02135 4.09627 4.29033 4.33226 4.36794 4.47758 4.59524 4.63900 4.76327 4.77933 4.79330 4.84903 4.86049 4.89811 4.97670 5.02026 5.10111 5.10767 5.22858 5.24939 5.28836 5.34322 5.46443 5.49408 5.54828 5.60535 5.63279 5.67090 5.93679 6.67490 6.91745 7.37143 7.60072 8.55997 9.25499 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.002799 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.045770 B =10001.027328 C =10366.680403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.073 4.073 5 H 0.060 0.940 6 C -0.153 4.153 7 C -0.132 4.132 8 C 0.505 3.495 9 O -0.583 6.583 10 N -0.720 5.720 11 C 0.142 3.858 12 C -0.114 4.114 13 C 0.167 3.833 14 N -0.647 5.647 15 C -0.237 4.237 16 H 0.083 0.917 17 C -0.069 4.069 18 N -0.954 5.954 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.274 1.274 23 C 0.125 3.875 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.009 0.991 41 H 0.045 0.955 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.707 -13.024 6.088 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.092 4.092 5 H 0.079 0.921 6 C -0.210 4.210 7 C -0.172 4.172 8 C 0.294 3.706 9 O -0.463 6.463 10 N -0.372 5.372 11 C 0.017 3.983 12 C -0.133 4.133 13 C 0.042 3.958 14 N -0.373 5.373 15 C -0.366 4.366 16 H 0.101 0.899 17 C -0.262 4.262 18 N -0.603 5.603 19 Si 0.808 3.192 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.200 1.200 23 C -0.001 4.001 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.162 -13.468 5.937 21.860 hybrid contribution 0.802 1.168 -0.672 1.568 sum -15.360 -12.300 5.265 20.371 Atomic orbital electron populations 1.21767 0.95246 1.01788 1.02047 1.21579 0.96243 0.96888 1.01849 1.21633 0.92940 0.97214 1.02848 1.20861 0.95743 0.94104 0.98443 0.92118 1.21959 1.01156 1.00856 0.97007 1.21829 0.89243 0.99963 1.06165 1.21378 0.91601 0.82901 0.74757 1.90643 1.71635 1.32287 1.51777 1.46058 1.07514 1.09619 1.74008 1.21114 0.80283 0.95795 1.01074 1.23388 0.96625 0.94511 0.98787 1.22257 0.88075 0.93211 0.92306 1.46427 1.28982 1.22856 1.39056 1.19408 1.04992 0.98494 1.13691 0.89929 1.25650 0.99837 1.02340 0.98367 1.69989 1.27744 1.38698 1.23823 0.85133 0.77877 0.78903 0.77302 1.20593 1.21954 1.19966 1.22701 0.93671 0.89606 0.94091 0.92539 0.92659 0.92423 0.92195 0.92500 0.90881 0.91214 0.92654 0.93721 0.92303 0.87267 0.86396 0.75100 0.91013 0.93396 0.87719 0.97270 0.93617 0.94228 0.91967 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.72 5.69 30.59 0.17 -1.54 16 3 C -0.11 -1.45 4.68 30.59 0.14 -1.30 16 4 C -0.07 -1.32 2.04 -10.79 -0.02 -1.34 16 5 H 0.06 1.31 7.96 -2.39 -0.02 1.29 16 6 C -0.15 -3.22 8.69 71.98 0.63 -2.60 16 7 C -0.13 -2.27 5.17 29.85 0.15 -2.12 16 8 C 0.51 13.08 7.55 87.66 0.66 13.74 16 9 O -0.58 -19.72 13.97 -3.05 -0.04 -19.76 16 10 N -0.72 -18.17 5.56 -463.06 -2.57 -20.74 16 11 C 0.14 4.27 5.51 86.38 0.48 4.74 16 12 C -0.11 -3.91 3.93 -10.14 -0.04 -3.95 16 13 C 0.17 7.77 7.08 86.44 0.61 8.38 16 14 N -0.65 -33.32 3.70 -716.07 -2.65 -35.97 16 15 C -0.24 -13.45 10.70 84.04 0.90 -12.55 16 16 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 18 N -0.95 -57.55 11.39 21.65 0.25 -57.31 16 19 Si 0.98 45.81 29.55 68.60 2.03 47.83 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.12 4.90 8.51 86.48 0.74 5.63 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.85 6.57 -2.39 -0.02 0.84 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 1.23 5.95 -2.39 -0.01 1.22 16 33 H 0.06 1.13 6.57 -2.39 -0.02 1.11 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.41 8.57 8.47 -92.71 -0.79 7.78 16 37 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.05 1.64 7.88 -2.39 -0.02 1.62 16 39 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 40 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 41 H 0.05 2.35 7.17 -2.38 -0.02 2.33 16 42 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 Total: -1.00 -70.39 350.86 2.78 -67.62 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.17 Total: 15.71 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 5.60 Total: 2.63 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.98 Total: -114.02 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.04 Total: -19.76 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.39 2.78 -67.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267677228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.661 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds