Wall clock time and date at job start Mon Mar 30 2020 00:44:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47341 * 2 1
4 4 C 1.53001 * 109.47341 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.46665 * 55.00128 * 4 3 2
6 6 C 1.52997 * 109.47023 * 295.00272 * 4 3 2
7 7 C 1.52997 * 109.47068 * 175.00142 * 4 3 2
8 8 C 1.50704 * 109.46727 * 185.00130 * 7 4 3
9 9 O 1.21278 * 120.00421 * 0.02562 * 8 7 4
10 10 N 1.34782 * 119.99482 * 180.02562 * 8 7 4
11 11 C 1.46502 * 119.99467 * 179.97438 * 10 8 7
12 12 C 1.53007 * 109.46729 * 179.97438 * 11 10 8
13 13 C 1.53495 * 114.20448 * 175.00023 * 12 11 10
14 14 N 1.47066 * 87.98658 * 87.51959 * 13 12 11
15 15 C 1.36937 * 136.06113 * 206.85859 * 14 13 12
16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 13
17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 13
18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.47441 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.47001 * 120.00359 * 19 17 15
22 22 H 1.48499 * 109.47209 * 240.00202 * 19 17 15
23 23 C 1.47067 * 87.88528 * 27.11900 * 14 13 12
24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46999 * 299.99633 * 1 2 3
26 26 H 1.09002 * 109.46818 * 59.99730 * 1 2 3
27 27 H 1.09004 * 109.46999 * 240.00367 * 2 1 3
28 28 H 1.09000 * 109.47362 * 120.00785 * 2 1 3
29 29 H 1.09004 * 109.46775 * 60.00229 * 3 2 1
30 30 H 1.09000 * 109.47533 * 300.00680 * 3 2 1
31 31 H 1.09006 * 109.47162 * 59.99951 * 6 4 3
32 32 H 1.09006 * 109.46832 * 179.97438 * 6 4 3
33 33 H 1.08999 * 109.47529 * 299.99945 * 6 4 3
34 34 H 1.08995 * 109.46925 * 65.00524 * 7 4 3
35 35 H 1.09001 * 109.47156 * 304.99944 * 7 4 3
36 36 H 0.96991 * 120.00203 * 0.02562 * 10 8 7
37 37 H 1.09003 * 109.46922 * 60.00635 * 11 10 8
38 38 H 1.08994 * 109.47369 * 300.00007 * 11 10 8
39 39 H 1.08994 * 113.28034 * 41.93499 * 12 11 10
40 40 H 1.09005 * 113.46950 * 332.74525 * 13 12 11
41 41 H 1.08994 * 113.52293 * 202.31009 * 13 12 11
42 42 H 0.96999 * 119.99537 * 179.97438 * 18 17 15
43 43 H 1.09007 * 113.46858 * 87.65629 * 23 14 13
44 44 H 1.08993 * 113.47208 * 218.09965 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5701 1.4425 0.0006
5 1 3.9337 0.8529 -0.8410
6 6 4.0795 0.8330 1.3083
7 6 4.0801 2.8795 -0.1250
8 6 5.5821 2.8703 -0.2480
9 8 6.1852 1.8182 -0.2367
10 7 6.2552 4.0316 -0.3704
11 6 7.7153 4.0228 -0.4894
12 6 8.2254 5.4599 -0.6152
13 6 9.7551 5.5861 -0.6251
14 7 9.7100 5.3902 -2.0819
15 6 10.5596 4.9005 -3.0378
16 1 11.5379 4.5395 -2.7569
17 6 10.1629 4.8672 -4.3677
18 7 8.9704 5.3068 -4.7099
19 14 11.3216 4.1985 -5.6714
20 1 12.5917 3.7702 -5.0322
21 1 10.6903 3.0355 -6.3451
22 1 11.6037 5.2578 -6.6732
23 6 8.3535 5.9579 -2.0615
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5138 -0.8901
28 1 1.8934 -0.5139 0.8899
29 1 1.6767 1.9563 0.8901
30 1 1.6767 1.9564 -0.8899
31 1 3.7161 -0.1908 1.3978
32 1 5.1696 0.8326 1.3085
33 1 3.7159 1.4225 2.1499
34 1 3.7915 3.4461 0.7601
35 1 3.6459 3.3430 -1.0109
36 1 5.7730 4.8731 -0.3791
37 1 8.0043 3.4563 -1.3746
38 1 8.1493 3.5591 0.3965
39 1 7.7239 6.1554 0.0576
40 1 10.2607 4.7794 -0.0942
41 1 10.1121 6.5729 -0.3306
42 1 8.6934 5.2838 -5.6392
43 1 8.3361 7.0442 -2.1496
44 1 7.6672 5.4675 -2.7518
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267677229.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:04
Heat of formation + Delta-G solvation = -10.970383 kcal
Electronic energy + Delta-G solvation = -20533.891789 eV
Core-core repulsion = 17487.119582 eV
Total energy + Delta-G solvation = -3046.772208 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-39.70401 -38.29219 -36.74312 -34.16234 -32.78096 -32.15422 -29.14056 -27.70528
-26.69934 -25.55213 -24.58267 -22.59485 -21.96172 -20.38921 -19.84516 -18.63060
-16.81127 -16.59409 -15.90036 -15.55566 -15.25575 -14.86692 -14.52202 -14.14389
-13.70826 -13.64086 -13.58590 -13.19833 -12.57923 -12.52111 -12.39260 -11.95546
-11.78170 -11.60992 -11.49577 -11.11248 -11.02589 -10.97407 -10.78804 -10.70087
-10.64892 -10.53082 -10.49641 -9.90110 -9.79222 -9.42078 -9.22215 -8.80328
-8.59035 -6.86952 -5.75598 -3.07666 2.96120 3.40828 3.46103 3.48615
3.51461 4.47746 4.61539 4.73129 4.77251 5.01566 5.07082 5.18188
5.28528 5.33653 5.37841 5.43016 5.45533 5.56960 5.57649 5.63120
5.67951 5.74607 5.81055 5.87496 6.03202 6.03616 6.05287 6.14762
6.20819 6.37397 6.38510 6.48228 6.54493 6.60888 6.73867 6.87970
7.19045 7.30536 7.56670 7.86236 7.99263 8.57344 9.05382 9.72050
10.65112 11.42007
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.023887 B = 0.003457 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1171.902533 B = 8098.347318 C = 8701.682961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.127 4.127
3 C -0.115 4.115
4 C -0.076 4.076
5 H 0.078 0.922
6 C -0.153 4.153
7 C -0.137 4.137
8 C 0.508 3.492
9 O -0.542 6.542
10 N -0.725 5.725
11 C 0.151 3.849
12 C -0.161 4.161
13 C 0.126 3.874
14 N -0.610 5.610
15 C -0.216 4.216
16 H 0.081 0.919
17 C -0.009 4.009
18 N -0.920 5.920
19 Si 0.912 3.088
20 H -0.279 1.279
21 H -0.290 1.290
22 H -0.291 1.291
23 C 0.159 3.841
24 H 0.051 0.949
25 H 0.052 0.948
26 H 0.052 0.948
27 H 0.061 0.939
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.061 0.939
31 H 0.052 0.948
32 H 0.075 0.925
33 H 0.045 0.955
34 H 0.089 0.911
35 H 0.091 0.909
36 H 0.397 0.603
37 H 0.082 0.918
38 H 0.057 0.943
39 H 0.071 0.929
40 H 0.041 0.959
41 H 0.036 0.964
42 H 0.252 0.748
43 H 0.024 0.976
44 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.331 -4.020 11.961 19.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.164 4.164
3 C -0.153 4.153
4 C -0.095 4.095
5 H 0.097 0.903
6 C -0.210 4.210
7 C -0.177 4.177
8 C 0.294 3.706
9 O -0.419 6.419
10 N -0.375 5.375
11 C 0.028 3.972
12 C -0.181 4.181
13 C -0.001 4.001
14 N -0.336 5.336
15 C -0.344 4.344
16 H 0.099 0.901
17 C -0.205 4.205
18 N -0.567 5.567
19 Si 0.742 3.258
20 H -0.204 1.204
21 H -0.217 1.217
22 H -0.218 1.218
23 C 0.033 3.967
24 H 0.070 0.930
25 H 0.071 0.929
26 H 0.072 0.928
27 H 0.080 0.920
28 H 0.083 0.917
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.071 0.929
32 H 0.094 0.906
33 H 0.064 0.936
34 H 0.107 0.893
35 H 0.110 0.890
36 H 0.231 0.769
37 H 0.100 0.900
38 H 0.076 0.924
39 H 0.089 0.911
40 H 0.060 0.940
41 H 0.053 0.947
42 H 0.062 0.938
43 H 0.042 0.958
44 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -14.749 -4.886 11.622 19.403
hybrid contribution 0.427 0.422 -0.849 1.040
sum -14.323 -4.464 10.773 18.470
Atomic orbital electron populations
1.21783 0.96162 1.01391 1.01641 1.21577 0.95434 0.97105 1.02305
1.21683 0.94874 0.96853 1.01860 1.20894 0.94222 0.94509 0.99891
0.90339 1.21990 1.03261 0.99963 0.95809 1.21756 0.92577 0.99477
1.03929 1.20618 0.89915 0.83792 0.76230 1.90661 1.70463 1.30878
1.49929 1.46088 1.08647 1.08570 1.74237 1.20990 0.77875 0.96292
1.02069 1.23265 0.98245 0.95498 1.01069 1.22354 0.92034 0.97956
0.87712 1.45645 1.15482 1.70844 1.01631 1.18983 0.95952 1.33252
0.86181 0.90093 1.24786 0.97245 1.01583 0.96885 1.69831 1.18557
1.51724 1.16578 0.86044 0.79822 0.78160 0.81750 1.20431 1.21658
1.21782 1.22138 0.88671 0.95375 0.90521 0.92981 0.92906 0.92839
0.91991 0.91738 0.92070 0.91990 0.92944 0.90608 0.93622 0.89276
0.89033 0.76949 0.90008 0.92442 0.91129 0.94047 0.94687 0.93779
0.95814 0.90872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16
2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16
3 C -0.12 -1.00 4.68 -26.73 -0.13 -1.12 16
4 C -0.08 -0.84 2.04 -90.62 -0.18 -1.02 16
5 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16
6 C -0.15 -1.73 8.69 37.16 0.32 -1.41 16
7 C -0.14 -1.48 5.17 -27.88 -0.14 -1.62 16
8 C 0.51 7.74 7.55 -10.98 -0.08 7.66 16
9 O -0.54 -10.40 13.97 5.56 0.08 -10.32 16
10 N -0.72 -10.74 5.56 -60.29 -0.33 -11.08 16
11 C 0.15 2.73 5.50 -4.04 -0.02 2.71 16
12 C -0.16 -2.88 4.18 -90.10 -0.38 -3.26 16
13 C 0.13 2.56 8.26 -8.51 -0.07 2.49 16
14 N -0.61 -15.70 3.62 -184.76 -0.67 -16.37 16
15 C -0.22 -6.16 10.75 -15.06 -0.16 -6.32 16
16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16
17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16
18 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16
19 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16
20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
23 C 0.16 3.65 6.89 -8.51 -0.06 3.59 16
24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16
25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
28 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16
29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
31 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16
32 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16
33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
36 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16
37 H 0.08 1.86 7.91 -51.93 -0.41 1.45 16
38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
40 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16
41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16
42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16
43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.07 1.88 7.09 -51.93 -0.37 1.51 16
LS Contribution 350.94 15.07 5.29 5.29
Total: -1.00 -32.73 350.94 -8.80 -41.53
By element:
Atomic # 1 Polarization: 8.87 SS G_CDS: -7.99 Total: 0.88 kcal
Atomic # 6 Polarization: 0.20 SS G_CDS: -0.78 Total: -0.58 kcal
Atomic # 7 Polarization: -53.97 SS G_CDS: -0.36 Total: -54.33 kcal
Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal
Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -32.73 -8.80 -41.53 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267677229.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal
(2) G-P(sol) polarization free energy of solvation -32.730 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.173 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds