Wall clock time and date at job start Mon Mar 30 2020 00:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46665 * 55.00128 * 4 3 2 6 6 C 1.52997 * 109.47023 * 295.00272 * 4 3 2 7 7 C 1.52997 * 109.47068 * 175.00142 * 4 3 2 8 8 C 1.50704 * 109.46727 * 185.00130 * 7 4 3 9 9 O 1.21278 * 120.00421 * 0.02562 * 8 7 4 10 10 N 1.34782 * 119.99482 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99467 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46729 * 179.97438 * 11 10 8 13 13 C 1.53495 * 114.20448 * 175.00023 * 12 11 10 14 14 N 1.47066 * 87.98658 * 87.51959 * 13 12 11 15 15 C 1.36937 * 136.06113 * 206.85859 * 14 13 12 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47441 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47001 * 120.00359 * 19 17 15 22 22 H 1.48499 * 109.47209 * 240.00202 * 19 17 15 23 23 C 1.47067 * 87.88528 * 27.11900 * 14 13 12 24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46999 * 299.99633 * 1 2 3 26 26 H 1.09002 * 109.46818 * 59.99730 * 1 2 3 27 27 H 1.09004 * 109.46999 * 240.00367 * 2 1 3 28 28 H 1.09000 * 109.47362 * 120.00785 * 2 1 3 29 29 H 1.09004 * 109.46775 * 60.00229 * 3 2 1 30 30 H 1.09000 * 109.47533 * 300.00680 * 3 2 1 31 31 H 1.09006 * 109.47162 * 59.99951 * 6 4 3 32 32 H 1.09006 * 109.46832 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47529 * 299.99945 * 6 4 3 34 34 H 1.08995 * 109.46925 * 65.00524 * 7 4 3 35 35 H 1.09001 * 109.47156 * 304.99944 * 7 4 3 36 36 H 0.96991 * 120.00203 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.46922 * 60.00635 * 11 10 8 38 38 H 1.08994 * 109.47369 * 300.00007 * 11 10 8 39 39 H 1.08994 * 113.28034 * 41.93499 * 12 11 10 40 40 H 1.09005 * 113.46950 * 332.74525 * 13 12 11 41 41 H 1.08994 * 113.52293 * 202.31009 * 13 12 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.46858 * 87.65629 * 23 14 13 44 44 H 1.08993 * 113.47208 * 218.09965 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0801 2.8795 -0.1250 8 6 5.5821 2.8703 -0.2480 9 8 6.1852 1.8182 -0.2367 10 7 6.2552 4.0316 -0.3704 11 6 7.7153 4.0228 -0.4894 12 6 8.2254 5.4599 -0.6152 13 6 9.7551 5.5861 -0.6251 14 7 9.7100 5.3902 -2.0819 15 6 10.5596 4.9005 -3.0378 16 1 11.5379 4.5395 -2.7569 17 6 10.1629 4.8672 -4.3677 18 7 8.9704 5.3068 -4.7099 19 14 11.3216 4.1985 -5.6714 20 1 12.5917 3.7702 -5.0322 21 1 10.6903 3.0355 -6.3451 22 1 11.6037 5.2578 -6.6732 23 6 8.3535 5.9579 -2.0615 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.7161 -0.1908 1.3978 32 1 5.1696 0.8326 1.3085 33 1 3.7159 1.4225 2.1499 34 1 3.7915 3.4461 0.7601 35 1 3.6459 3.3430 -1.0109 36 1 5.7730 4.8731 -0.3791 37 1 8.0043 3.4563 -1.3746 38 1 8.1493 3.5591 0.3965 39 1 7.7239 6.1554 0.0576 40 1 10.2607 4.7794 -0.0942 41 1 10.1121 6.5729 -0.3306 42 1 8.6934 5.2838 -5.6392 43 1 8.3361 7.0442 -2.1496 44 1 7.6672 5.4675 -2.7518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267677229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:04 Heat of formation + Delta-G solvation = -10.970383 kcal Electronic energy + Delta-G solvation = -20533.891789 eV Core-core repulsion = 17487.119582 eV Total energy + Delta-G solvation = -3046.772208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70401 -38.29219 -36.74312 -34.16234 -32.78096 -32.15422 -29.14056 -27.70528 -26.69934 -25.55213 -24.58267 -22.59485 -21.96172 -20.38921 -19.84516 -18.63060 -16.81127 -16.59409 -15.90036 -15.55566 -15.25575 -14.86692 -14.52202 -14.14389 -13.70826 -13.64086 -13.58590 -13.19833 -12.57923 -12.52111 -12.39260 -11.95546 -11.78170 -11.60992 -11.49577 -11.11248 -11.02589 -10.97407 -10.78804 -10.70087 -10.64892 -10.53082 -10.49641 -9.90110 -9.79222 -9.42078 -9.22215 -8.80328 -8.59035 -6.86952 -5.75598 -3.07666 2.96120 3.40828 3.46103 3.48615 3.51461 4.47746 4.61539 4.73129 4.77251 5.01566 5.07082 5.18188 5.28528 5.33653 5.37841 5.43016 5.45533 5.56960 5.57649 5.63120 5.67951 5.74607 5.81055 5.87496 6.03202 6.03616 6.05287 6.14762 6.20819 6.37397 6.38510 6.48228 6.54493 6.60888 6.73867 6.87970 7.19045 7.30536 7.56670 7.86236 7.99263 8.57344 9.05382 9.72050 10.65112 11.42007 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003457 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.902533 B = 8098.347318 C = 8701.682961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.153 4.153 7 C -0.137 4.137 8 C 0.508 3.492 9 O -0.542 6.542 10 N -0.725 5.725 11 C 0.151 3.849 12 C -0.161 4.161 13 C 0.126 3.874 14 N -0.610 5.610 15 C -0.216 4.216 16 H 0.081 0.919 17 C -0.009 4.009 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.159 3.841 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.397 0.603 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.252 0.748 43 H 0.024 0.976 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.331 -4.020 11.961 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.097 0.903 6 C -0.210 4.210 7 C -0.177 4.177 8 C 0.294 3.706 9 O -0.419 6.419 10 N -0.375 5.375 11 C 0.028 3.972 12 C -0.181 4.181 13 C -0.001 4.001 14 N -0.336 5.336 15 C -0.344 4.344 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.033 3.967 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.749 -4.886 11.622 19.403 hybrid contribution 0.427 0.422 -0.849 1.040 sum -14.323 -4.464 10.773 18.470 Atomic orbital electron populations 1.21783 0.96162 1.01391 1.01641 1.21577 0.95434 0.97105 1.02305 1.21683 0.94874 0.96853 1.01860 1.20894 0.94222 0.94509 0.99891 0.90339 1.21990 1.03261 0.99963 0.95809 1.21756 0.92577 0.99477 1.03929 1.20618 0.89915 0.83792 0.76230 1.90661 1.70463 1.30878 1.49929 1.46088 1.08647 1.08570 1.74237 1.20990 0.77875 0.96292 1.02069 1.23265 0.98245 0.95498 1.01069 1.22354 0.92034 0.97956 0.87712 1.45645 1.15482 1.70844 1.01631 1.18983 0.95952 1.33252 0.86181 0.90093 1.24786 0.97245 1.01583 0.96885 1.69831 1.18557 1.51724 1.16578 0.86044 0.79822 0.78160 0.81750 1.20431 1.21658 1.21782 1.22138 0.88671 0.95375 0.90521 0.92981 0.92906 0.92839 0.91991 0.91738 0.92070 0.91990 0.92944 0.90608 0.93622 0.89276 0.89033 0.76949 0.90008 0.92442 0.91129 0.94047 0.94687 0.93779 0.95814 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16 3 C -0.12 -1.00 4.68 -26.73 -0.13 -1.12 16 4 C -0.08 -0.84 2.04 -90.62 -0.18 -1.02 16 5 H 0.08 1.02 7.95 -51.93 -0.41 0.61 16 6 C -0.15 -1.73 8.69 37.16 0.32 -1.41 16 7 C -0.14 -1.48 5.17 -27.88 -0.14 -1.62 16 8 C 0.51 7.74 7.55 -10.98 -0.08 7.66 16 9 O -0.54 -10.40 13.97 5.56 0.08 -10.32 16 10 N -0.72 -10.74 5.56 -60.29 -0.33 -11.08 16 11 C 0.15 2.73 5.50 -4.04 -0.02 2.71 16 12 C -0.16 -2.88 4.18 -90.10 -0.38 -3.26 16 13 C 0.13 2.56 8.26 -8.51 -0.07 2.49 16 14 N -0.61 -15.70 3.62 -184.76 -0.67 -16.37 16 15 C -0.22 -6.16 10.75 -15.06 -0.16 -6.32 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -27.52 11.51 55.49 0.64 -26.88 16 19 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.16 3.65 6.89 -8.51 -0.06 3.59 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 32 H 0.08 1.07 5.95 -51.93 -0.31 0.76 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.71 8.47 -40.82 -0.35 4.36 16 37 H 0.08 1.86 7.91 -51.93 -0.41 1.45 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.88 7.09 -51.93 -0.37 1.51 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.73 350.94 -8.80 -41.53 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.99 Total: 0.88 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -0.78 Total: -0.58 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.36 Total: -54.33 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.73 -8.80 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267677229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.557 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds