Wall clock time and date at job start Mon Mar 30 2020 00:44:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.47341 * 2 1
4 4 C 1.53001 * 109.47341 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.46665 * 55.00128 * 4 3 2
6 6 C 1.52997 * 109.47023 * 295.00272 * 4 3 2
7 7 C 1.52997 * 109.47068 * 175.00142 * 4 3 2
8 8 C 1.50704 * 109.46727 * 185.00130 * 7 4 3
9 9 O 1.21278 * 120.00421 * 0.02562 * 8 7 4
10 10 N 1.34782 * 119.99482 * 180.02562 * 8 7 4
11 11 C 1.46502 * 119.99467 * 179.97438 * 10 8 7
12 12 C 1.53007 * 109.46729 * 179.97438 * 11 10 8
13 13 C 1.53495 * 114.20448 * 175.00023 * 12 11 10
14 14 N 1.47066 * 87.98658 * 87.51959 * 13 12 11
15 15 C 1.36937 * 136.06113 * 206.85859 * 14 13 12
16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 13
17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 13
18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14
20 20 H 1.48497 * 109.47441 * 0.02562 * 19 17 15
21 21 H 1.48500 * 109.47001 * 120.00359 * 19 17 15
22 22 H 1.48499 * 109.47209 * 240.00202 * 19 17 15
23 23 C 1.47067 * 87.88528 * 27.11900 * 14 13 12
24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46999 * 299.99633 * 1 2 3
26 26 H 1.09002 * 109.46818 * 59.99730 * 1 2 3
27 27 H 1.09004 * 109.46999 * 240.00367 * 2 1 3
28 28 H 1.09000 * 109.47362 * 120.00785 * 2 1 3
29 29 H 1.09004 * 109.46775 * 60.00229 * 3 2 1
30 30 H 1.09000 * 109.47533 * 300.00680 * 3 2 1
31 31 H 1.09006 * 109.47162 * 59.99951 * 6 4 3
32 32 H 1.09006 * 109.46832 * 179.97438 * 6 4 3
33 33 H 1.08999 * 109.47529 * 299.99945 * 6 4 3
34 34 H 1.08995 * 109.46925 * 65.00524 * 7 4 3
35 35 H 1.09001 * 109.47156 * 304.99944 * 7 4 3
36 36 H 0.96991 * 120.00203 * 0.02562 * 10 8 7
37 37 H 1.09003 * 109.46922 * 60.00635 * 11 10 8
38 38 H 1.08994 * 109.47369 * 300.00007 * 11 10 8
39 39 H 1.08994 * 113.28034 * 41.93499 * 12 11 10
40 40 H 1.09005 * 113.46950 * 332.74525 * 13 12 11
41 41 H 1.08994 * 113.52293 * 202.31009 * 13 12 11
42 42 H 0.96999 * 119.99537 * 179.97438 * 18 17 15
43 43 H 1.09007 * 113.46858 * 87.65629 * 23 14 13
44 44 H 1.08993 * 113.47208 * 218.09965 * 23 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5701 1.4425 0.0006
5 1 3.9337 0.8529 -0.8410
6 6 4.0795 0.8330 1.3083
7 6 4.0801 2.8795 -0.1250
8 6 5.5821 2.8703 -0.2480
9 8 6.1852 1.8182 -0.2367
10 7 6.2552 4.0316 -0.3704
11 6 7.7153 4.0228 -0.4894
12 6 8.2254 5.4599 -0.6152
13 6 9.7551 5.5861 -0.6251
14 7 9.7100 5.3902 -2.0819
15 6 10.5596 4.9005 -3.0378
16 1 11.5379 4.5395 -2.7569
17 6 10.1629 4.8672 -4.3677
18 7 8.9704 5.3068 -4.7099
19 14 11.3216 4.1985 -5.6714
20 1 12.5917 3.7702 -5.0322
21 1 10.6903 3.0355 -6.3451
22 1 11.6037 5.2578 -6.6732
23 6 8.3535 5.9579 -2.0615
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8901
26 1 -0.3633 0.5139 -0.8900
27 1 1.8933 -0.5138 -0.8901
28 1 1.8934 -0.5139 0.8899
29 1 1.6767 1.9563 0.8901
30 1 1.6767 1.9564 -0.8899
31 1 3.7161 -0.1908 1.3978
32 1 5.1696 0.8326 1.3085
33 1 3.7159 1.4225 2.1499
34 1 3.7915 3.4461 0.7601
35 1 3.6459 3.3430 -1.0109
36 1 5.7730 4.8731 -0.3791
37 1 8.0043 3.4563 -1.3746
38 1 8.1493 3.5591 0.3965
39 1 7.7239 6.1554 0.0576
40 1 10.2607 4.7794 -0.0942
41 1 10.1121 6.5729 -0.3306
42 1 8.6934 5.2838 -5.6392
43 1 8.3361 7.0442 -2.1496
44 1 7.6672 5.4675 -2.7518
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267677229.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:44:03
Heat of formation + Delta-G solvation = -32.051011 kcal
Electronic energy + Delta-G solvation = -20534.805914 eV
Core-core repulsion = 17487.119582 eV
Total energy + Delta-G solvation = -3047.686332 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.98637 -39.90952 -37.62991 -35.59837 -34.20810 -33.53806 -30.68550 -29.11061
-27.48101 -27.05887 -26.32503 -24.31462 -22.89378 -21.47803 -20.88223 -20.17397
-18.73304 -17.81329 -17.23975 -16.94203 -16.54200 -16.29413 -15.81203 -15.63152
-15.05067 -14.79747 -14.64625 -14.33940 -14.15466 -13.92684 -13.39787 -13.15077
-12.97998 -12.90282 -12.76993 -12.55975 -12.51558 -12.31431 -12.25385 -11.84130
-11.78282 -11.62690 -11.60652 -11.45400 -11.24388 -11.06037 -10.92406 -10.60493
-9.96127 -8.91221 -7.92358 -5.24088 1.42186 1.43876 1.53477 1.76058
2.31224 2.45677 3.29969 3.51032 3.65538 3.82982 3.85596 3.99766
4.01387 4.29418 4.31624 4.46298 4.54052 4.60129 4.65778 4.75488
4.78249 4.79822 4.84209 4.88967 4.96368 4.98664 5.01662 5.08554
5.11016 5.23108 5.24460 5.28696 5.32980 5.45978 5.48588 5.53572
5.58827 5.62488 5.68612 5.95000 6.69763 6.91054 7.40106 7.59611
8.60579 9.25246
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.023887 B = 0.003457 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1171.902533 B = 8098.347318 C = 8701.682961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.129 4.129
3 C -0.107 4.107
4 C -0.076 4.076
5 H 0.048 0.952
6 C -0.149 4.149
7 C -0.128 4.128
8 C 0.501 3.499
9 O -0.588 6.588
10 N -0.716 5.716
11 C 0.162 3.838
12 C -0.123 4.123
13 C 0.123 3.877
14 N -0.646 5.646
15 C -0.226 4.226
16 H 0.082 0.918
17 C -0.069 4.069
18 N -0.951 5.951
19 Si 0.975 3.025
20 H -0.266 1.266
21 H -0.295 1.295
22 H -0.289 1.289
23 C 0.156 3.844
24 H 0.054 0.946
25 H 0.060 0.940
26 H 0.054 0.946
27 H 0.049 0.951
28 H 0.063 0.937
29 H 0.078 0.922
30 H 0.068 0.932
31 H 0.056 0.944
32 H 0.042 0.958
33 H 0.064 0.936
34 H 0.124 0.876
35 H 0.110 0.890
36 H 0.415 0.585
37 H 0.026 0.974
38 H 0.063 0.937
39 H 0.122 0.878
40 H 0.048 0.952
41 H 0.058 0.942
42 H 0.247 0.753
43 H 0.024 0.976
44 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.651 -3.090 13.713 21.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.167 4.167
3 C -0.145 4.145
4 C -0.095 4.095
5 H 0.066 0.934
6 C -0.206 4.206
7 C -0.167 4.167
8 C 0.289 3.711
9 O -0.469 6.469
10 N -0.368 5.368
11 C 0.038 3.962
12 C -0.142 4.142
13 C -0.002 4.002
14 N -0.373 5.373
15 C -0.354 4.354
16 H 0.099 0.901
17 C -0.262 4.262
18 N -0.600 5.600
19 Si 0.804 3.196
20 H -0.190 1.190
21 H -0.222 1.222
22 H -0.216 1.216
23 C 0.030 3.970
24 H 0.073 0.927
25 H 0.080 0.920
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.081 0.919
29 H 0.097 0.903
30 H 0.087 0.913
31 H 0.075 0.925
32 H 0.061 0.939
33 H 0.083 0.917
34 H 0.142 0.858
35 H 0.128 0.872
36 H 0.252 0.748
37 H 0.044 0.956
38 H 0.081 0.919
39 H 0.140 0.860
40 H 0.066 0.934
41 H 0.076 0.924
42 H 0.056 0.944
43 H 0.041 0.959
44 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -16.080 -3.923 13.415 21.306
hybrid contribution 0.849 0.108 -1.332 1.583
sum -15.231 -3.815 12.083 19.813
Atomic orbital electron populations
1.21761 0.95029 1.01806 1.02140 1.21589 0.96416 0.96967 1.01705
1.21623 0.92660 0.97181 1.02986 1.20880 0.95981 0.94207 0.98480
0.93381 1.21930 1.01064 1.00854 0.96798 1.21809 0.88649 0.99955
1.06314 1.21515 0.91816 0.82917 0.74812 1.90652 1.71799 1.32567
1.51838 1.45962 1.07289 1.09667 1.73867 1.20622 0.80142 0.95770
0.99702 1.23001 0.97166 0.95799 0.98243 1.22591 0.93849 0.99163
0.84605 1.46022 1.16338 1.71155 1.03749 1.19339 0.96329 1.32556
0.87212 0.90057 1.25603 0.98879 1.02766 0.98973 1.70006 1.20164
1.53429 1.16378 0.85047 0.78390 0.77128 0.79044 1.18999 1.22200
1.21620 1.22128 0.87001 0.94860 0.93025 0.92702 0.92045 0.92658
0.93204 0.91867 0.90328 0.91347 0.92498 0.93882 0.91667 0.85841
0.87214 0.74821 0.95571 0.91854 0.86029 0.93402 0.92403 0.94443
0.95860 0.94447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16
2 C -0.13 -1.98 5.69 30.59 0.17 -1.81 16
3 C -0.11 -1.60 4.68 30.59 0.14 -1.45 16
4 C -0.08 -1.59 2.04 -10.79 -0.02 -1.61 16
5 H 0.05 1.28 7.95 -2.39 -0.02 1.26 16
6 C -0.15 -3.24 8.69 71.98 0.63 -2.62 16
7 C -0.13 -2.46 5.17 29.85 0.15 -2.30 16
8 C 0.50 14.94 7.55 87.66 0.66 15.60 16
9 O -0.59 -23.25 13.97 -3.02 -0.04 -23.29 16
10 N -0.72 -20.24 5.56 -463.04 -2.57 -22.81 16
11 C 0.16 5.80 5.50 86.38 0.47 6.28 16
12 C -0.12 -4.15 4.18 -10.46 -0.04 -4.19 16
13 C 0.12 4.80 8.26 83.18 0.69 5.48 16
14 N -0.65 -33.46 3.62 -738.46 -2.67 -36.13 16
15 C -0.23 -13.06 10.75 84.03 0.90 -12.16 16
16 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16
17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16
18 N -0.95 -58.59 11.51 21.65 0.25 -58.34 16
19 Si 0.98 47.35 29.55 68.60 2.03 49.38 16
20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
21 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16
22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16
23 C 0.16 7.14 6.89 83.18 0.57 7.72 16
24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
28 H 0.06 0.97 6.56 -2.39 -0.02 0.96 16
29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
31 H 0.06 1.15 6.56 -2.38 -0.02 1.13 16
32 H 0.04 1.23 5.95 -2.38 -0.01 1.22 16
33 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16
34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16
35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.42 8.66 8.47 -92.72 -0.79 7.88 16
37 H 0.03 1.23 7.91 -2.39 -0.02 1.22 16
38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16
39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16
40 H 0.05 1.79 8.12 -2.38 -0.02 1.77 16
41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16
43 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16
44 H 0.04 1.97 7.09 -2.39 -0.02 1.96 16
Total: -1.00 -74.78 350.94 2.67 -72.11
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: 0.17 Total: 14.91 kcal
Atomic # 6 Polarization: -1.33 SS G_CDS: 5.51 Total: 4.18 kcal
Atomic # 7 Polarization: -112.29 SS G_CDS: -4.99 Total: -117.28 kcal
Atomic # 8 Polarization: -23.25 SS G_CDS: -0.04 Total: -23.29 kcal
Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal
Total: -74.78 2.67 -72.11 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267677229.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.061 kcal
(2) G-P(sol) polarization free energy of solvation -74.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.723 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds