Wall clock time and date at job start Mon Mar 30 2020 00:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53001 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46665 * 55.00128 * 4 3 2 6 6 C 1.52997 * 109.47023 * 295.00272 * 4 3 2 7 7 C 1.52997 * 109.47068 * 175.00142 * 4 3 2 8 8 C 1.50704 * 109.46727 * 185.00130 * 7 4 3 9 9 O 1.21278 * 120.00421 * 0.02562 * 8 7 4 10 10 N 1.34782 * 119.99482 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99467 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46729 * 179.97438 * 11 10 8 13 13 C 1.53495 * 114.20448 * 175.00023 * 12 11 10 14 14 N 1.47066 * 87.98658 * 87.51959 * 13 12 11 15 15 C 1.36937 * 136.06113 * 206.85859 * 14 13 12 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47441 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47001 * 120.00359 * 19 17 15 22 22 H 1.48499 * 109.47209 * 240.00202 * 19 17 15 23 23 C 1.47067 * 87.88528 * 27.11900 * 14 13 12 24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46999 * 299.99633 * 1 2 3 26 26 H 1.09002 * 109.46818 * 59.99730 * 1 2 3 27 27 H 1.09004 * 109.46999 * 240.00367 * 2 1 3 28 28 H 1.09000 * 109.47362 * 120.00785 * 2 1 3 29 29 H 1.09004 * 109.46775 * 60.00229 * 3 2 1 30 30 H 1.09000 * 109.47533 * 300.00680 * 3 2 1 31 31 H 1.09006 * 109.47162 * 59.99951 * 6 4 3 32 32 H 1.09006 * 109.46832 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47529 * 299.99945 * 6 4 3 34 34 H 1.08995 * 109.46925 * 65.00524 * 7 4 3 35 35 H 1.09001 * 109.47156 * 304.99944 * 7 4 3 36 36 H 0.96991 * 120.00203 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.46922 * 60.00635 * 11 10 8 38 38 H 1.08994 * 109.47369 * 300.00007 * 11 10 8 39 39 H 1.08994 * 113.28034 * 41.93499 * 12 11 10 40 40 H 1.09005 * 113.46950 * 332.74525 * 13 12 11 41 41 H 1.08994 * 113.52293 * 202.31009 * 13 12 11 42 42 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 43 43 H 1.09007 * 113.46858 * 87.65629 * 23 14 13 44 44 H 1.08993 * 113.47208 * 218.09965 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8330 1.3083 7 6 4.0801 2.8795 -0.1250 8 6 5.5821 2.8703 -0.2480 9 8 6.1852 1.8182 -0.2367 10 7 6.2552 4.0316 -0.3704 11 6 7.7153 4.0228 -0.4894 12 6 8.2254 5.4599 -0.6152 13 6 9.7551 5.5861 -0.6251 14 7 9.7100 5.3902 -2.0819 15 6 10.5596 4.9005 -3.0378 16 1 11.5379 4.5395 -2.7569 17 6 10.1629 4.8672 -4.3677 18 7 8.9704 5.3068 -4.7099 19 14 11.3216 4.1985 -5.6714 20 1 12.5917 3.7702 -5.0322 21 1 10.6903 3.0355 -6.3451 22 1 11.6037 5.2578 -6.6732 23 6 8.3535 5.9579 -2.0615 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8899 31 1 3.7161 -0.1908 1.3978 32 1 5.1696 0.8326 1.3085 33 1 3.7159 1.4225 2.1499 34 1 3.7915 3.4461 0.7601 35 1 3.6459 3.3430 -1.0109 36 1 5.7730 4.8731 -0.3791 37 1 8.0043 3.4563 -1.3746 38 1 8.1493 3.5591 0.3965 39 1 7.7239 6.1554 0.0576 40 1 10.2607 4.7794 -0.0942 41 1 10.1121 6.5729 -0.3306 42 1 8.6934 5.2838 -5.6392 43 1 8.3361 7.0442 -2.1496 44 1 7.6672 5.4675 -2.7518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267677229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:03 Heat of formation + Delta-G solvation = -32.051011 kcal Electronic energy + Delta-G solvation = -20534.805914 eV Core-core repulsion = 17487.119582 eV Total energy + Delta-G solvation = -3047.686332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98637 -39.90952 -37.62991 -35.59837 -34.20810 -33.53806 -30.68550 -29.11061 -27.48101 -27.05887 -26.32503 -24.31462 -22.89378 -21.47803 -20.88223 -20.17397 -18.73304 -17.81329 -17.23975 -16.94203 -16.54200 -16.29413 -15.81203 -15.63152 -15.05067 -14.79747 -14.64625 -14.33940 -14.15466 -13.92684 -13.39787 -13.15077 -12.97998 -12.90282 -12.76993 -12.55975 -12.51558 -12.31431 -12.25385 -11.84130 -11.78282 -11.62690 -11.60652 -11.45400 -11.24388 -11.06037 -10.92406 -10.60493 -9.96127 -8.91221 -7.92358 -5.24088 1.42186 1.43876 1.53477 1.76058 2.31224 2.45677 3.29969 3.51032 3.65538 3.82982 3.85596 3.99766 4.01387 4.29418 4.31624 4.46298 4.54052 4.60129 4.65778 4.75488 4.78249 4.79822 4.84209 4.88967 4.96368 4.98664 5.01662 5.08554 5.11016 5.23108 5.24460 5.28696 5.32980 5.45978 5.48588 5.53572 5.58827 5.62488 5.68612 5.95000 6.69763 6.91054 7.40106 7.59611 8.60579 9.25246 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003457 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.902533 B = 8098.347318 C = 8701.682961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.076 4.076 5 H 0.048 0.952 6 C -0.149 4.149 7 C -0.128 4.128 8 C 0.501 3.499 9 O -0.588 6.588 10 N -0.716 5.716 11 C 0.162 3.838 12 C -0.123 4.123 13 C 0.123 3.877 14 N -0.646 5.646 15 C -0.226 4.226 16 H 0.082 0.918 17 C -0.069 4.069 18 N -0.951 5.951 19 Si 0.975 3.025 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.156 3.844 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.415 0.585 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.247 0.753 43 H 0.024 0.976 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -3.090 13.713 21.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.145 4.145 4 C -0.095 4.095 5 H 0.066 0.934 6 C -0.206 4.206 7 C -0.167 4.167 8 C 0.289 3.711 9 O -0.469 6.469 10 N -0.368 5.368 11 C 0.038 3.962 12 C -0.142 4.142 13 C -0.002 4.002 14 N -0.373 5.373 15 C -0.354 4.354 16 H 0.099 0.901 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.030 3.970 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.128 0.872 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.080 -3.923 13.415 21.306 hybrid contribution 0.849 0.108 -1.332 1.583 sum -15.231 -3.815 12.083 19.813 Atomic orbital electron populations 1.21761 0.95029 1.01806 1.02140 1.21589 0.96416 0.96967 1.01705 1.21623 0.92660 0.97181 1.02986 1.20880 0.95981 0.94207 0.98480 0.93381 1.21930 1.01064 1.00854 0.96798 1.21809 0.88649 0.99955 1.06314 1.21515 0.91816 0.82917 0.74812 1.90652 1.71799 1.32567 1.51838 1.45962 1.07289 1.09667 1.73867 1.20622 0.80142 0.95770 0.99702 1.23001 0.97166 0.95799 0.98243 1.22591 0.93849 0.99163 0.84605 1.46022 1.16338 1.71155 1.03749 1.19339 0.96329 1.32556 0.87212 0.90057 1.25603 0.98879 1.02766 0.98973 1.70006 1.20164 1.53429 1.16378 0.85047 0.78390 0.77128 0.79044 1.18999 1.22200 1.21620 1.22128 0.87001 0.94860 0.93025 0.92702 0.92045 0.92658 0.93204 0.91867 0.90328 0.91347 0.92498 0.93882 0.91667 0.85841 0.87214 0.74821 0.95571 0.91854 0.86029 0.93402 0.92403 0.94443 0.95860 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.13 -1.98 5.69 30.59 0.17 -1.81 16 3 C -0.11 -1.60 4.68 30.59 0.14 -1.45 16 4 C -0.08 -1.59 2.04 -10.79 -0.02 -1.61 16 5 H 0.05 1.28 7.95 -2.39 -0.02 1.26 16 6 C -0.15 -3.24 8.69 71.98 0.63 -2.62 16 7 C -0.13 -2.46 5.17 29.85 0.15 -2.30 16 8 C 0.50 14.94 7.55 87.66 0.66 15.60 16 9 O -0.59 -23.25 13.97 -3.02 -0.04 -23.29 16 10 N -0.72 -20.24 5.56 -463.04 -2.57 -22.81 16 11 C 0.16 5.80 5.50 86.38 0.47 6.28 16 12 C -0.12 -4.15 4.18 -10.46 -0.04 -4.19 16 13 C 0.12 4.80 8.26 83.18 0.69 5.48 16 14 N -0.65 -33.46 3.62 -738.46 -2.67 -36.13 16 15 C -0.23 -13.06 10.75 84.03 0.90 -12.16 16 16 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 18 N -0.95 -58.59 11.51 21.65 0.25 -58.34 16 19 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 C 0.16 7.14 6.89 83.18 0.57 7.72 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.97 6.56 -2.39 -0.02 0.96 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 1.15 6.56 -2.38 -0.02 1.13 16 32 H 0.04 1.23 5.95 -2.38 -0.01 1.22 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.42 8.66 8.47 -92.72 -0.79 7.88 16 37 H 0.03 1.23 7.91 -2.39 -0.02 1.22 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.05 1.79 8.12 -2.38 -0.02 1.77 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.04 1.97 7.09 -2.39 -0.02 1.96 16 Total: -1.00 -74.78 350.94 2.67 -72.11 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.17 Total: 14.91 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.51 Total: 4.18 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.99 Total: -117.28 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.04 Total: -23.29 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -74.78 2.67 -72.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267677229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.061 kcal (2) G-P(sol) polarization free energy of solvation -74.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds