Wall clock time and date at job start Mon Mar 30 2020 00:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46928 * 2 1 4 4 C 1.52998 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47619 * 304.99674 * 4 3 2 6 6 C 1.53002 * 109.47274 * 65.00169 * 4 3 2 7 7 C 1.50704 * 109.47213 * 184.99819 * 4 3 2 8 8 O 1.21282 * 119.99824 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00154 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99687 * 180.02562 * 9 7 4 11 11 H 1.08995 * 109.52349 * 325.08187 * 10 9 7 12 12 C 1.53037 * 109.49242 * 204.99714 * 10 9 7 13 13 C 1.53038 * 109.53575 * 178.68404 * 12 10 9 14 14 C 1.53199 * 109.31364 * 61.36563 * 13 12 10 15 15 N 1.46924 * 108.77607 * 305.36522 * 14 13 12 16 16 C 1.36932 * 120.63273 * 233.58507 * 15 14 13 17 17 H 1.07997 * 120.00221 * 152.39381 * 16 15 14 18 18 C 1.38814 * 119.99844 * 332.40095 * 16 15 14 19 19 N 1.31624 * 120.00036 * 334.90838 * 18 16 15 20 20 Si 1.86799 * 119.99988 * 154.91552 * 18 16 15 21 21 H 1.48497 * 109.47347 * 59.99678 * 20 18 16 22 22 H 1.48493 * 109.47109 * 299.99384 * 20 18 16 23 23 H 1.48503 * 109.46741 * 179.97438 * 20 18 16 24 24 C 1.46932 * 118.73729 * 53.85911 * 15 14 13 25 25 H 1.08997 * 109.47571 * 300.00448 * 1 2 3 26 26 H 1.09000 * 109.46871 * 60.00360 * 1 2 3 27 27 H 1.09005 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47571 * 239.99552 * 2 1 3 29 29 H 1.09000 * 109.46871 * 119.99640 * 2 1 3 30 30 H 1.09005 * 109.47178 * 59.99684 * 3 2 1 31 31 H 1.09000 * 109.47050 * 299.99530 * 3 2 1 32 32 H 1.09005 * 109.47244 * 59.99655 * 6 4 3 33 33 H 1.09001 * 109.47562 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.46793 * 299.99654 * 6 4 3 35 35 H 0.96996 * 120.00106 * 359.97438 * 9 7 4 36 36 H 1.08997 * 109.46616 * 58.66534 * 12 10 9 37 37 H 1.09003 * 109.44801 * 298.69604 * 12 10 9 38 38 H 1.08996 * 109.50126 * 301.41187 * 13 12 10 39 39 H 1.09002 * 109.49990 * 181.31522 * 13 12 10 40 40 H 1.08998 * 109.58705 * 185.57503 * 14 13 12 41 41 H 1.09004 * 109.58434 * 65.15634 * 14 13 12 42 42 H 0.97005 * 119.99507 * 354.26060 * 19 18 16 43 43 H 1.08996 * 109.58881 * 65.92433 * 24 15 14 44 44 H 1.08998 * 109.58543 * 186.35435 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8579 0.1244 8 8 3.2841 3.7762 0.2047 9 7 5.3973 3.1033 0.1459 10 6 5.8855 4.4793 0.2668 11 1 5.2127 5.1526 -0.2643 12 6 7.2884 4.5783 -0.3366 13 6 7.7862 6.0223 -0.2404 14 6 7.8634 6.4345 1.2331 15 7 6.5535 6.2049 1.8576 16 6 5.9156 7.2121 2.5313 17 1 4.8377 7.2190 2.5980 18 6 6.6544 8.2243 3.1284 19 7 7.9009 8.0040 3.4894 20 14 5.8797 9.8989 3.4196 21 1 4.6958 9.7497 4.3034 22 1 5.4574 10.4815 2.1206 23 1 6.8700 10.7966 4.0666 24 6 5.9437 4.8724 1.7508 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7175 1.4220 -2.1485 33 1 5.1705 0.8322 -1.3058 34 1 3.7172 -0.1911 -1.3959 35 1 6.0277 2.3689 0.0820 36 1 7.2561 4.2744 -1.3828 37 1 7.9661 3.9233 0.2111 38 1 7.0956 6.6810 -0.7667 39 1 8.7758 6.0968 -0.6913 40 1 8.1219 7.4910 1.3039 41 1 8.6202 5.8363 1.7407 42 1 8.2770 7.1129 3.4153 43 1 6.5471 4.1494 2.2997 44 1 4.9352 4.8979 2.1633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267919798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:11 Heat of formation + Delta-G solvation = -49.460515 kcal Electronic energy + Delta-G solvation = -21269.943620 eV Core-core repulsion = 18221.502355 eV Total energy + Delta-G solvation = -3048.441265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91494 -37.69372 -35.97063 -34.45991 -32.73427 -31.89449 -30.38302 -28.57333 -26.77192 -25.08137 -24.22735 -22.32370 -21.87755 -20.85098 -19.85742 -19.13093 -17.36589 -16.81610 -15.87656 -15.67589 -14.83330 -14.41478 -14.14385 -14.05152 -13.95227 -13.55152 -13.48415 -13.08285 -12.69316 -12.62675 -12.44689 -12.29199 -12.06977 -11.97375 -11.41645 -11.15647 -11.06951 -10.96977 -10.72778 -10.66404 -10.66080 -10.34939 -10.07252 -10.01910 -9.95980 -9.43695 -9.28284 -8.84856 -8.26997 -6.85860 -6.03762 -3.19692 2.88318 3.37685 3.54681 3.57311 3.75466 4.58845 4.60445 4.68821 4.75698 4.99259 5.07515 5.13238 5.20768 5.30405 5.37788 5.41741 5.48013 5.58460 5.61134 5.62471 5.66045 5.71141 5.80712 5.88814 5.96902 5.99311 6.06760 6.14277 6.17115 6.27453 6.39892 6.44682 6.58018 6.64209 6.73559 6.92418 7.08266 7.19268 7.76916 8.06958 8.49613 8.61468 9.14363 9.88212 10.30631 11.24679 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004225 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.836649 B = 6625.713690 C = 7438.931711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.112 4.112 5 H 0.094 0.906 6 C -0.144 4.144 7 C 0.512 3.488 8 O -0.536 6.536 9 N -0.724 5.724 10 C 0.126 3.874 11 H 0.086 0.914 12 C -0.114 4.114 13 C -0.134 4.134 14 C 0.147 3.853 15 N -0.595 5.595 16 C -0.347 4.347 17 H 0.057 0.943 18 C -0.024 4.024 19 N -0.917 5.917 20 Si 1.065 2.935 21 H -0.293 1.293 22 H -0.293 1.293 23 H -0.285 1.285 24 C 0.145 3.855 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.017 0.983 42 H 0.268 0.732 43 H 0.015 0.985 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -16.749 -9.792 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.201 4.201 7 C 0.297 3.703 8 O -0.412 6.412 9 N -0.375 5.375 10 C 0.020 3.980 11 H 0.104 0.896 12 C -0.153 4.153 13 C -0.174 4.174 14 C 0.021 3.979 15 N -0.319 5.319 16 C -0.476 4.476 17 H 0.075 0.925 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.894 3.106 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.211 1.211 24 C 0.017 3.983 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.035 0.965 42 H 0.079 0.921 43 H 0.033 0.967 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.028 -14.487 -9.162 18.171 hybrid contribution 0.042 -2.033 -0.538 2.103 sum -5.986 -16.520 -9.700 20.071 Atomic orbital electron populations 1.21764 0.95837 1.01332 1.02074 1.21597 0.95982 0.96792 1.01891 1.21430 0.92379 0.96427 1.03687 1.21346 0.97840 0.93881 1.00244 0.88748 1.21816 1.01011 1.01169 0.96115 1.20618 0.82473 0.91109 0.76070 1.90726 1.55206 1.46340 1.48950 1.46157 1.06813 1.09753 1.74730 1.21776 0.94988 0.81489 0.99735 0.89632 1.21666 0.95603 0.98620 0.99373 1.22057 0.99805 0.94903 1.00615 1.21009 0.87224 1.01011 0.88650 1.44080 1.19971 1.06701 1.61154 1.20020 0.91817 1.04344 1.31466 0.92523 1.25853 0.97083 1.04069 0.95565 1.70795 1.16153 1.25108 1.43697 0.83532 0.74885 0.76031 0.76138 1.21952 1.22005 1.21105 1.21265 0.97595 0.87646 0.91750 0.92621 0.92719 0.92932 0.91878 0.92083 0.90991 0.91345 0.92129 0.92288 0.91411 0.77337 0.92872 0.92314 0.92075 0.92528 0.90015 0.96505 0.92143 0.96741 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.04 5.69 -26.73 -0.15 -1.19 16 3 C -0.10 -1.11 4.03 -26.73 -0.11 -1.22 16 4 C -0.11 -1.20 2.73 -91.77 -0.25 -1.45 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.14 -1.19 8.84 37.16 0.33 -0.86 16 7 C 0.51 7.86 7.12 -10.98 -0.08 7.78 16 8 O -0.54 -10.83 15.58 5.56 0.09 -10.75 16 9 N -0.72 -10.49 4.97 -53.47 -0.27 -10.75 16 10 C 0.13 2.30 2.62 -67.58 -0.18 2.13 16 11 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 12 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C -0.13 -2.50 6.08 -26.61 -0.16 -2.66 16 14 C 0.15 3.45 4.69 -3.71 -0.02 3.43 16 15 N -0.60 -15.43 2.85 -172.05 -0.49 -15.92 16 16 C -0.35 -10.12 9.49 -15.06 -0.14 -10.26 16 17 H 0.06 1.70 7.94 -52.49 -0.42 1.28 16 18 C -0.02 -0.70 4.68 -17.43 -0.08 -0.78 16 19 N -0.92 -27.82 12.40 55.49 0.69 -27.14 16 20 Si 1.06 25.98 29.99 -169.99 -5.10 20.89 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.14 3.25 6.12 -3.48 -0.02 3.23 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 35 H 0.39 4.37 8.02 -40.82 -0.33 4.04 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 2.15 6.29 -51.93 -0.33 1.83 16 41 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 42 H 0.27 8.15 6.72 -40.82 -0.27 7.88 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 343.18 15.07 5.17 5.17 Total: -1.00 -33.09 343.18 -8.46 -41.55 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.92 Total: 1.63 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.64 Total: -4.69 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.07 Total: -53.80 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 25.98 SS G_CDS: -5.10 Total: 20.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.09 -8.46 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267919798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.908 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds