Wall clock time and date at job start Mon Mar 30 2020 00:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46928 * 2 1 4 4 C 1.52998 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47619 * 304.99674 * 4 3 2 6 6 C 1.53002 * 109.47274 * 65.00169 * 4 3 2 7 7 C 1.50704 * 109.47213 * 184.99819 * 4 3 2 8 8 O 1.21282 * 119.99824 * 0.02562 * 7 4 3 9 9 N 1.34779 * 120.00154 * 180.02562 * 7 4 3 10 10 C 1.46504 * 119.99687 * 180.02562 * 9 7 4 11 11 H 1.08995 * 109.52349 * 325.08187 * 10 9 7 12 12 C 1.53037 * 109.49242 * 204.99714 * 10 9 7 13 13 C 1.53038 * 109.53575 * 178.68404 * 12 10 9 14 14 C 1.53199 * 109.31364 * 61.36563 * 13 12 10 15 15 N 1.46924 * 108.77607 * 305.36522 * 14 13 12 16 16 C 1.36932 * 120.63273 * 233.58507 * 15 14 13 17 17 H 1.07997 * 120.00221 * 152.39381 * 16 15 14 18 18 C 1.38814 * 119.99844 * 332.40095 * 16 15 14 19 19 N 1.31624 * 120.00036 * 334.90838 * 18 16 15 20 20 Si 1.86799 * 119.99988 * 154.91552 * 18 16 15 21 21 H 1.48497 * 109.47347 * 59.99678 * 20 18 16 22 22 H 1.48493 * 109.47109 * 299.99384 * 20 18 16 23 23 H 1.48503 * 109.46741 * 179.97438 * 20 18 16 24 24 C 1.46932 * 118.73729 * 53.85911 * 15 14 13 25 25 H 1.08997 * 109.47571 * 300.00448 * 1 2 3 26 26 H 1.09000 * 109.46871 * 60.00360 * 1 2 3 27 27 H 1.09005 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47571 * 239.99552 * 2 1 3 29 29 H 1.09000 * 109.46871 * 119.99640 * 2 1 3 30 30 H 1.09005 * 109.47178 * 59.99684 * 3 2 1 31 31 H 1.09000 * 109.47050 * 299.99530 * 3 2 1 32 32 H 1.09005 * 109.47244 * 59.99655 * 6 4 3 33 33 H 1.09001 * 109.47562 * 180.02562 * 6 4 3 34 34 H 1.09004 * 109.46793 * 299.99654 * 6 4 3 35 35 H 0.96996 * 120.00106 * 359.97438 * 9 7 4 36 36 H 1.08997 * 109.46616 * 58.66534 * 12 10 9 37 37 H 1.09003 * 109.44801 * 298.69604 * 12 10 9 38 38 H 1.08996 * 109.50126 * 301.41187 * 13 12 10 39 39 H 1.09002 * 109.49990 * 181.31522 * 13 12 10 40 40 H 1.08998 * 109.58705 * 185.57503 * 14 13 12 41 41 H 1.09004 * 109.58434 * 65.15634 * 14 13 12 42 42 H 0.97005 * 119.99507 * 354.26060 * 19 18 16 43 43 H 1.08996 * 109.58881 * 65.92433 * 24 15 14 44 44 H 1.08998 * 109.58543 * 186.35435 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8533 0.8426 6 6 4.0805 0.8327 -1.3064 7 6 4.0722 2.8579 0.1244 8 8 3.2841 3.7762 0.2047 9 7 5.3973 3.1033 0.1459 10 6 5.8855 4.4793 0.2668 11 1 5.2127 5.1526 -0.2643 12 6 7.2884 4.5783 -0.3366 13 6 7.7862 6.0223 -0.2404 14 6 7.8634 6.4345 1.2331 15 7 6.5535 6.2049 1.8576 16 6 5.9156 7.2121 2.5313 17 1 4.8377 7.2190 2.5980 18 6 6.6544 8.2243 3.1284 19 7 7.9009 8.0040 3.4894 20 14 5.8797 9.8989 3.4196 21 1 4.6958 9.7497 4.3034 22 1 5.4574 10.4815 2.1206 23 1 6.8700 10.7966 4.0666 24 6 5.9437 4.8724 1.7508 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7175 1.4220 -2.1485 33 1 5.1705 0.8322 -1.3058 34 1 3.7172 -0.1911 -1.3959 35 1 6.0277 2.3689 0.0820 36 1 7.2561 4.2744 -1.3828 37 1 7.9661 3.9233 0.2111 38 1 7.0956 6.6810 -0.7667 39 1 8.7758 6.0968 -0.6913 40 1 8.1219 7.4910 1.3039 41 1 8.6202 5.8363 1.7407 42 1 8.2770 7.1129 3.4153 43 1 6.5471 4.1494 2.2997 44 1 4.9352 4.8979 2.1633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267919798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:10 Heat of formation + Delta-G solvation = -70.945476 kcal Electronic energy + Delta-G solvation = -21270.875278 eV Core-core repulsion = 18221.502355 eV Total energy + Delta-G solvation = -3049.372923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21133 -39.31418 -36.95044 -36.13552 -34.31817 -32.85313 -32.31494 -30.15890 -27.50303 -27.12929 -25.30744 -24.01463 -23.35895 -21.88339 -21.29504 -20.52763 -19.44445 -17.97463 -17.25382 -16.67398 -16.22103 -16.16210 -15.72326 -15.49204 -15.26610 -15.03383 -14.87149 -14.35855 -14.10531 -13.97380 -13.66313 -13.46819 -13.14856 -13.01815 -12.74502 -12.63509 -12.47044 -12.13798 -11.96292 -11.89883 -11.86388 -11.85658 -11.78926 -11.65880 -11.41240 -11.27538 -10.73831 -10.59774 -10.12535 -8.97979 -8.31370 -5.46969 1.54200 1.61228 1.65464 1.81632 2.14783 2.61846 3.14976 3.50107 3.68466 3.77948 3.83251 3.94841 4.01129 4.09954 4.29121 4.32094 4.35351 4.37784 4.44087 4.63601 4.66385 4.71048 4.79663 4.87980 4.90457 4.95140 4.98628 5.01771 5.05166 5.12499 5.13531 5.22735 5.23657 5.30125 5.38550 5.43839 5.49841 5.53717 5.77238 6.34289 6.59663 6.99894 7.31295 7.71645 8.12681 8.92798 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025110 B = 0.004225 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.836649 B = 6625.713690 C = 7438.931711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.101 4.101 4 C -0.102 4.102 5 H 0.118 0.882 6 C -0.139 4.139 7 C 0.505 3.495 8 O -0.593 6.593 9 N -0.708 5.708 10 C 0.141 3.859 11 H 0.051 0.949 12 C -0.103 4.103 13 C -0.125 4.125 14 C 0.150 3.850 15 N -0.616 5.616 16 C -0.363 4.363 17 H 0.035 0.965 18 C -0.068 4.068 19 N -0.935 5.935 20 Si 1.113 2.887 21 H -0.280 1.280 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.147 3.853 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.015 0.985 42 H 0.256 0.744 43 H 0.023 0.977 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 -19.137 -11.375 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.139 4.139 4 C -0.123 4.123 5 H 0.136 0.864 6 C -0.196 4.196 7 C 0.293 3.707 8 O -0.473 6.473 9 N -0.360 5.360 10 C 0.034 3.966 11 H 0.069 0.931 12 C -0.141 4.141 13 C -0.165 4.165 14 C 0.025 3.975 15 N -0.341 5.341 16 C -0.493 4.493 17 H 0.053 0.947 18 C -0.265 4.265 19 N -0.576 5.576 20 Si 0.937 3.063 21 H -0.206 1.206 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.020 3.980 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.245 -16.949 -10.773 20.757 hybrid contribution -0.231 -1.326 -0.008 1.345 sum -5.476 -18.275 -10.781 21.913 Atomic orbital electron populations 1.21792 0.95898 1.02172 1.01431 1.21566 0.95941 0.94688 1.03291 1.21415 0.92864 0.98077 1.01564 1.21392 0.97365 0.90666 1.02850 0.86416 1.21837 1.02087 1.02019 0.93692 1.21608 0.82092 0.92649 0.74362 1.90710 1.56626 1.48592 1.51367 1.45936 1.07229 1.08824 1.74043 1.21266 0.96205 0.82978 0.96115 0.93114 1.21608 0.93626 0.97154 1.01719 1.21934 1.01598 0.96356 0.96600 1.20964 0.85817 0.98955 0.91809 1.44291 1.20828 1.07397 1.61581 1.20147 0.91208 1.05947 1.32016 0.94691 1.27182 0.97024 1.07128 0.95133 1.70905 1.16914 1.24401 1.45372 0.82890 0.74525 0.72121 0.76760 1.20599 1.20693 1.20840 1.21297 0.95313 0.86523 0.94826 0.93693 0.93074 0.91285 0.89924 0.91044 0.93887 0.92914 0.93202 0.90575 0.88851 0.74679 0.89099 0.90230 0.93481 0.89098 0.93578 0.96731 0.93417 0.95920 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.68 5.69 30.59 0.17 -1.51 16 3 C -0.10 -2.17 4.03 30.59 0.12 -2.04 16 4 C -0.10 -1.98 2.73 -11.54 -0.03 -2.01 16 5 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.14 -1.80 8.84 71.98 0.64 -1.16 16 7 C 0.50 15.31 7.12 87.66 0.62 15.93 16 8 O -0.59 -25.04 15.58 -3.04 -0.05 -25.09 16 9 N -0.71 -19.32 4.97 -441.46 -2.19 -21.52 16 10 C 0.14 5.11 2.62 45.21 0.12 5.23 16 11 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.10 -3.01 5.35 30.62 0.16 -2.85 16 13 C -0.13 -4.47 6.08 30.67 0.19 -4.28 16 14 C 0.15 7.11 4.69 86.36 0.41 7.51 16 15 N -0.62 -32.97 2.85 -698.23 -1.99 -34.95 16 16 C -0.36 -22.06 9.49 84.03 0.80 -21.26 16 17 H 0.04 2.22 7.94 -2.91 -0.02 2.20 16 18 C -0.07 -4.03 4.68 84.86 0.40 -3.63 16 19 N -0.93 -58.05 12.40 21.65 0.27 -57.78 16 20 Si 1.11 53.46 29.99 68.60 2.06 55.52 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 C 0.15 6.77 6.12 86.51 0.53 7.30 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.08 0.89 6.57 -2.39 -0.02 0.87 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 1.15 7.95 -2.38 -0.02 1.13 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.08 0.75 7.56 -2.39 -0.02 0.73 16 34 H 0.09 0.79 6.57 -2.39 -0.02 0.77 16 35 H 0.42 7.71 8.02 -92.71 -0.74 6.96 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 2.49 6.29 -2.39 -0.02 2.48 16 41 H 0.01 0.69 7.87 -2.39 -0.02 0.68 16 42 H 0.26 16.07 6.72 -92.70 -0.62 15.45 16 43 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.02 1.18 7.93 -2.39 -0.02 1.16 16 Total: -1.00 -77.28 343.18 3.29 -73.99 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.36 Total: 14.18 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.84 Total: -4.34 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.91 Total: -114.25 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.09 kcal Atomic # 14 Polarization: 53.46 SS G_CDS: 2.06 Total: 55.52 kcal Total: -77.28 3.29 -73.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267919798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.042 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds