Wall clock time and date at job start Mon Mar 30 2020 00:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46803 * 2 1 4 4 C 1.52999 * 109.47217 * 119.99783 * 2 1 3 5 5 H 1.08997 * 109.46966 * 59.99849 * 4 2 1 6 6 C 1.52997 * 109.47469 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47555 * 175.00230 * 6 4 2 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.53784 * 113.61355 * 274.13724 * 11 10 8 13 13 C 1.53950 * 87.01692 * 220.04794 * 12 11 10 14 14 C 1.53772 * 87.11568 * 25.35976 * 13 12 11 15 15 N 1.46504 * 109.47126 * 300.00299 * 4 2 1 16 16 C 1.36939 * 120.00057 * 84.99733 * 15 4 2 17 17 H 1.07998 * 119.99529 * 0.02562 * 16 15 4 18 18 C 1.38813 * 119.99778 * 180.02562 * 16 15 4 19 19 N 1.31613 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99723 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47233 * 89.99974 * 20 18 16 22 22 H 1.48502 * 109.46958 * 210.00295 * 20 18 16 23 23 H 1.48502 * 109.47229 * 330.00059 * 20 18 16 24 24 H 1.09000 * 109.46426 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47158 * 300.00253 * 1 2 3 26 26 H 1.09003 * 109.46777 * 59.99986 * 1 2 3 27 27 H 1.08998 * 109.47411 * 240.00092 * 2 1 3 28 28 H 1.09001 * 109.46617 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46802 * 299.99766 * 3 2 1 30 30 H 1.08998 * 109.47062 * 59.99879 * 3 2 1 31 31 H 1.08998 * 109.47382 * 54.99791 * 6 4 2 32 32 H 1.09002 * 109.47216 * 295.00228 * 6 4 2 33 33 H 0.97000 * 119.99484 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 35 35 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 36 36 H 1.08998 * 112.84807 * 45.32601 * 11 10 8 37 37 H 1.09000 * 113.61287 * 334.56904 * 12 11 10 38 38 H 1.09000 * 113.61378 * 105.46737 * 12 11 10 39 39 H 1.09006 * 113.53474 * 270.80576 * 13 12 11 40 40 H 1.09001 * 113.66906 * 139.93676 * 13 12 11 41 41 H 1.09000 * 113.61789 * 220.09159 * 14 13 12 42 42 H 1.09000 * 113.69011 * 89.19469 * 14 13 12 43 43 H 0.97003 * 120.00175 * 264.99801 * 15 4 2 44 44 H 0.97009 * 119.99761 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7488 1.2493 6 6 3.5700 -0.7207 1.2496 7 7 4.0584 -1.3044 2.5014 8 6 5.3834 -1.4076 2.7251 9 8 6.1716 -1.0175 1.8898 10 6 5.8857 -2.0137 4.0102 11 6 7.4157 -2.0177 4.0084 12 6 8.0277 -3.2477 3.3174 13 6 9.0752 -3.2600 4.4455 14 6 8.0319 -2.5408 5.3166 15 7 1.5517 -0.0306 2.4454 16 6 0.3101 -0.3210 2.9448 17 1 -0.3089 -1.0595 2.4570 18 6 -0.1528 0.3338 4.0779 19 7 0.6013 1.2341 4.6719 20 14 -1.8462 -0.0629 4.7594 21 1 -1.7365 -1.1675 5.7458 22 1 -2.4065 1.1409 5.4245 23 1 -2.7418 -0.4773 3.6498 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9331 0.3032 1.1602 32 1 3.9338 -1.3099 0.4078 33 1 3.4280 -1.6160 3.1696 34 1 5.5249 -1.4262 4.8544 35 1 5.5198 -3.0367 4.0967 36 1 7.8409 -1.0718 3.6730 37 1 7.3739 -4.1198 3.3191 38 1 8.4460 -3.0330 2.3341 39 1 9.9554 -2.6545 4.2288 40 1 9.3251 -4.2601 4.7997 41 1 8.4537 -1.7562 5.9449 42 1 7.3787 -3.2182 5.8666 43 1 2.1078 0.6325 2.8838 44 1 0.2779 1.6914 5.4640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268202948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:30 Heat of formation + Delta-G solvation = -30.120698 kcal Electronic energy + Delta-G solvation = -21122.418677 eV Core-core repulsion = 18074.816049 eV Total energy + Delta-G solvation = -3047.602628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73559 -38.29754 -37.13831 -33.74757 -32.91732 -30.75587 -29.97750 -27.76328 -26.29294 -25.60615 -24.12820 -23.22922 -21.87171 -19.98653 -19.34219 -18.69668 -17.35378 -16.56840 -15.87213 -15.51316 -15.10021 -14.71593 -14.42681 -14.21186 -13.65424 -13.43466 -13.27379 -12.90481 -12.66535 -12.46441 -12.21584 -11.88003 -11.78821 -11.36140 -11.31393 -11.01560 -10.93234 -10.80142 -10.63526 -10.54327 -10.31792 -10.26048 -10.17403 -10.12970 -9.89306 -9.49829 -9.37002 -8.92705 -8.52006 -7.02915 -5.82840 -3.11387 3.06168 3.38087 3.44809 3.46022 3.67002 4.53183 4.61068 4.64129 4.73186 4.86650 5.24272 5.39493 5.42907 5.43780 5.54500 5.55383 5.68695 5.70851 5.74344 5.77686 5.84378 5.85867 5.92248 5.94322 6.06897 6.14213 6.25042 6.28513 6.34569 6.44872 6.53010 6.58778 6.66474 6.72952 6.81651 7.01257 7.06792 7.34327 7.65791 8.03441 8.34638 8.67981 9.46838 10.02094 10.38393 11.38970 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.004666 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.970923 B = 5999.937291 C = 7132.771195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.168 3.832 5 H 0.052 0.948 6 C 0.112 3.888 7 N -0.715 5.715 8 C 0.510 3.490 9 O -0.556 6.556 10 C -0.133 4.133 11 C -0.091 4.091 12 C -0.134 4.134 13 C -0.143 4.143 14 C -0.139 4.139 15 N -0.717 5.717 16 C -0.236 4.236 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.901 3.099 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.282 1.282 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.409 0.591 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -7.316 -2.464 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.013 4.013 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.435 6.435 10 C -0.173 4.173 11 C -0.110 4.110 12 C -0.171 4.171 13 C -0.180 4.180 14 C -0.177 4.177 15 N -0.359 5.359 16 C -0.367 4.367 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.733 3.267 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.208 1.208 24 H 0.058 0.942 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.245 0.755 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.220 0.780 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.703 -7.097 -3.012 13.190 hybrid contribution -1.258 -0.025 0.833 1.509 sum 9.445 -7.121 -2.178 12.028 Atomic orbital electron populations 1.21837 0.95055 1.00802 1.02062 1.21618 0.96746 0.96584 0.97967 1.21793 0.99692 0.96776 1.01610 1.20540 0.89496 0.95835 0.88405 0.93007 1.21717 0.95534 0.98415 0.85610 1.46041 1.06868 1.62460 1.21242 1.20629 0.82382 0.78773 0.88621 1.90640 1.55582 1.50088 1.47236 1.21686 0.96713 1.02377 0.96547 1.22292 0.92934 0.99457 0.96310 1.22957 0.98020 0.97911 0.98232 1.22825 0.97199 1.00490 0.97525 1.22982 0.98262 1.00071 0.96345 1.42422 1.17984 1.47470 1.28067 1.19201 0.92832 1.17915 1.06712 0.90988 1.24703 0.98223 0.99213 0.98527 1.69658 1.36873 1.28986 1.22237 0.86281 0.84387 0.77132 0.78922 1.21834 1.21918 1.20791 0.94176 0.89376 0.95045 0.93320 0.93660 0.94338 0.91280 0.91505 0.92246 0.75457 0.88661 0.89198 0.88409 0.90501 0.91377 0.90400 0.91754 0.91545 0.90098 0.78049 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 37.16 0.31 -2.22 16 2 C -0.11 -1.84 2.80 -90.61 -0.25 -2.09 16 3 C -0.14 -2.42 8.69 37.16 0.32 -2.10 16 4 C 0.17 3.06 2.35 -67.93 -0.16 2.90 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.91 5.02 -4.04 -0.02 1.89 16 7 N -0.71 -11.81 5.39 -60.29 -0.32 -12.14 16 8 C 0.51 8.32 7.83 -10.98 -0.09 8.23 16 9 O -0.56 -10.72 15.79 5.55 0.09 -10.64 16 10 C -0.13 -1.69 5.52 -27.88 -0.15 -1.84 16 11 C -0.09 -1.10 3.11 -89.81 -0.28 -1.38 16 12 C -0.13 -1.49 7.65 -25.83 -0.20 -1.69 16 13 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 14 C -0.14 -1.37 7.65 -25.93 -0.20 -1.56 16 15 N -0.72 -15.84 3.67 -53.43 -0.20 -16.04 16 16 C -0.24 -5.83 7.57 -15.06 -0.11 -5.94 16 17 H 0.07 1.76 7.40 -52.49 -0.39 1.37 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -26.26 13.06 55.49 0.72 -25.53 16 20 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.74 6.32 -51.93 -0.33 0.41 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 31 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.41 6.79 8.14 -40.82 -0.33 6.46 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.10 1.34 7.73 -51.93 -0.40 0.94 16 37 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.39 9.38 7.80 -40.82 -0.32 9.06 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -28.03 347.68 -8.45 -36.47 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -7.82 Total: 14.17 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -1.14 Total: -7.72 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.20 Total: -53.71 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.03 -8.45 -36.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268202948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.354 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds