Wall clock time and date at job start Mon Mar 30 2020 00:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46803 * 2 1 4 4 C 1.52999 * 109.47217 * 119.99783 * 2 1 3 5 5 H 1.08997 * 109.46966 * 59.99849 * 4 2 1 6 6 C 1.52997 * 109.47469 * 180.02562 * 4 2 1 7 7 N 1.46499 * 109.47555 * 175.00230 * 6 4 2 8 8 C 1.34777 * 120.00199 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99750 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99928 * 180.27479 * 8 7 6 11 11 C 1.52996 * 109.47159 * 179.72352 * 10 8 7 12 12 C 1.53784 * 113.61355 * 274.13724 * 11 10 8 13 13 C 1.53950 * 87.01692 * 220.04794 * 12 11 10 14 14 C 1.53772 * 87.11568 * 25.35976 * 13 12 11 15 15 N 1.46504 * 109.47126 * 300.00299 * 4 2 1 16 16 C 1.36939 * 120.00057 * 84.99733 * 15 4 2 17 17 H 1.07998 * 119.99529 * 0.02562 * 16 15 4 18 18 C 1.38813 * 119.99778 * 180.02562 * 16 15 4 19 19 N 1.31613 * 120.00123 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99723 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47233 * 89.99974 * 20 18 16 22 22 H 1.48502 * 109.46958 * 210.00295 * 20 18 16 23 23 H 1.48502 * 109.47229 * 330.00059 * 20 18 16 24 24 H 1.09000 * 109.46426 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47158 * 300.00253 * 1 2 3 26 26 H 1.09003 * 109.46777 * 59.99986 * 1 2 3 27 27 H 1.08998 * 109.47411 * 240.00092 * 2 1 3 28 28 H 1.09001 * 109.46617 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46802 * 299.99766 * 3 2 1 30 30 H 1.08998 * 109.47062 * 59.99879 * 3 2 1 31 31 H 1.08998 * 109.47382 * 54.99791 * 6 4 2 32 32 H 1.09002 * 109.47216 * 295.00228 * 6 4 2 33 33 H 0.97000 * 119.99484 * 359.97438 * 7 6 4 34 34 H 1.09004 * 109.46965 * 299.72211 * 10 8 7 35 35 H 1.08994 * 109.46990 * 59.72065 * 10 8 7 36 36 H 1.08998 * 112.84807 * 45.32601 * 11 10 8 37 37 H 1.09000 * 113.61287 * 334.56904 * 12 11 10 38 38 H 1.09000 * 113.61378 * 105.46737 * 12 11 10 39 39 H 1.09006 * 113.53474 * 270.80576 * 13 12 11 40 40 H 1.09001 * 113.66906 * 139.93676 * 13 12 11 41 41 H 1.09000 * 113.61789 * 220.09159 * 14 13 12 42 42 H 1.09000 * 113.69011 * 89.19469 * 14 13 12 43 43 H 0.97003 * 120.00175 * 264.99801 * 15 4 2 44 44 H 0.97009 * 119.99761 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7488 1.2493 6 6 3.5700 -0.7207 1.2496 7 7 4.0584 -1.3044 2.5014 8 6 5.3834 -1.4076 2.7251 9 8 6.1716 -1.0175 1.8898 10 6 5.8857 -2.0137 4.0102 11 6 7.4157 -2.0177 4.0084 12 6 8.0277 -3.2477 3.3174 13 6 9.0752 -3.2600 4.4455 14 6 8.0319 -2.5408 5.3166 15 7 1.5517 -0.0306 2.4454 16 6 0.3101 -0.3210 2.9448 17 1 -0.3089 -1.0595 2.4570 18 6 -0.1528 0.3338 4.0779 19 7 0.6013 1.2341 4.6719 20 14 -1.8462 -0.0629 4.7594 21 1 -1.7365 -1.1675 5.7458 22 1 -2.4065 1.1409 5.4245 23 1 -2.7418 -0.4773 3.6498 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.9331 0.3032 1.1602 32 1 3.9338 -1.3099 0.4078 33 1 3.4280 -1.6160 3.1696 34 1 5.5249 -1.4262 4.8544 35 1 5.5198 -3.0367 4.0967 36 1 7.8409 -1.0718 3.6730 37 1 7.3739 -4.1198 3.3191 38 1 8.4460 -3.0330 2.3341 39 1 9.9554 -2.6545 4.2288 40 1 9.3251 -4.2601 4.7997 41 1 8.4537 -1.7562 5.9449 42 1 7.3787 -3.2182 5.8666 43 1 2.1078 0.6325 2.8838 44 1 0.2779 1.6914 5.4640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268202948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:29 Heat of formation + Delta-G solvation = -46.341056 kcal Electronic energy + Delta-G solvation = -21123.122045 eV Core-core repulsion = 18074.816049 eV Total energy + Delta-G solvation = -3048.305995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94805 -39.41342 -38.56418 -35.19536 -34.71665 -32.11807 -31.48495 -29.23794 -27.74105 -26.42819 -25.71172 -24.58202 -23.22377 -21.30359 -20.22779 -20.15779 -19.20232 -17.88798 -17.14239 -16.84749 -16.33695 -16.19820 -15.85299 -15.34802 -15.17177 -14.91548 -14.72427 -14.39924 -13.94623 -13.67538 -13.30016 -13.26045 -12.89351 -12.80466 -12.73994 -12.64741 -12.43113 -12.29177 -12.14569 -11.93635 -11.87260 -11.49217 -11.36636 -11.21282 -11.17812 -11.03512 -10.86887 -10.63441 -9.91184 -8.91655 -7.84452 -5.10316 1.51141 1.53280 1.59458 1.75990 2.39681 2.62400 3.49365 3.68454 3.78702 3.85450 3.92651 3.97235 4.02672 4.17205 4.28828 4.35861 4.44405 4.53673 4.58984 4.70671 4.76455 4.80031 4.90678 4.93747 4.95433 4.99665 5.04799 5.12788 5.14208 5.19997 5.23168 5.31142 5.33618 5.43488 5.58875 5.60960 5.65970 5.68399 5.83081 6.35734 6.69712 7.35940 7.44307 8.16239 8.41773 9.38429 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.004666 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.970923 B = 5999.937291 C = 7132.771195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.135 4.135 4 C 0.170 3.830 5 H 0.056 0.944 6 C 0.120 3.880 7 N -0.715 5.715 8 C 0.506 3.494 9 O -0.589 6.589 10 C -0.127 4.127 11 C -0.101 4.101 12 C -0.137 4.137 13 C -0.135 4.135 14 C -0.130 4.130 15 N -0.720 5.720 16 C -0.212 4.212 17 H 0.078 0.922 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.956 3.044 21 H -0.290 1.290 22 H -0.306 1.306 23 H -0.273 1.273 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -9.062 -3.031 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.061 3.939 5 H 0.074 0.926 6 C -0.005 4.005 7 N -0.366 5.366 8 C 0.294 3.706 9 O -0.470 6.470 10 C -0.166 4.166 11 C -0.120 4.120 12 C -0.174 4.174 13 C -0.173 4.173 14 C -0.168 4.168 15 N -0.360 5.360 16 C -0.344 4.344 17 H 0.096 0.904 18 C -0.262 4.262 19 N -0.619 5.619 20 Si 0.787 3.213 21 H -0.218 1.218 22 H -0.234 1.234 23 H -0.198 1.198 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.246 0.754 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.205 0.795 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.843 -8.882 -3.616 14.476 hybrid contribution -1.273 0.502 0.881 1.627 sum 9.571 -8.380 -2.736 13.012 Atomic orbital electron populations 1.21751 0.95478 1.00892 1.01201 1.21591 0.96286 0.96565 0.98230 1.21709 1.00020 0.96673 1.00785 1.20670 0.90193 0.95561 0.87474 0.92599 1.21589 0.94505 0.97957 0.86466 1.46075 1.07157 1.62293 1.21052 1.21282 0.81844 0.78070 0.89425 1.90623 1.56214 1.51518 1.48644 1.21732 0.97146 1.03316 0.94418 1.22304 0.92418 0.98900 0.98334 1.22992 0.98791 0.97704 0.97920 1.22803 0.96743 1.01404 0.96324 1.22969 0.98172 1.00252 0.95382 1.42488 1.17083 1.47314 1.29157 1.19468 0.93292 1.16181 1.05457 0.90399 1.25289 1.01034 1.00146 0.99729 1.69800 1.38333 1.30887 1.22834 0.85395 0.81447 0.76139 0.78312 1.21792 1.23379 1.19814 0.93544 0.93010 0.93113 0.90442 0.93075 0.92537 0.94645 0.92916 0.90994 0.75395 0.88123 0.86926 0.90771 0.89572 0.93040 0.90287 0.90104 0.91125 0.88755 0.79502 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.26 71.98 0.59 -4.02 16 2 C -0.11 -3.39 2.80 -10.79 -0.03 -3.42 16 3 C -0.13 -4.45 8.69 71.98 0.63 -3.82 16 4 C 0.17 5.97 2.35 44.99 0.11 6.07 16 5 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 6 C 0.12 3.96 5.02 86.38 0.43 4.40 16 7 N -0.71 -23.11 5.39 -463.06 -2.49 -25.61 16 8 C 0.51 16.25 7.83 87.66 0.69 16.94 16 9 O -0.59 -22.73 15.79 -3.04 -0.05 -22.78 16 10 C -0.13 -3.05 5.52 29.85 0.16 -2.89 16 11 C -0.10 -2.34 3.11 -10.27 -0.03 -2.37 16 12 C -0.14 -2.88 7.65 31.18 0.24 -2.64 16 13 C -0.14 -2.28 8.09 31.17 0.25 -2.03 16 14 C -0.13 -2.29 7.65 31.12 0.24 -2.05 16 15 N -0.72 -31.66 3.67 -322.94 -1.19 -32.85 16 16 C -0.21 -10.40 7.57 84.03 0.64 -9.77 16 17 H 0.08 3.70 7.40 -2.91 -0.02 3.68 16 18 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 19 N -0.97 -55.76 13.06 21.65 0.28 -55.48 16 20 Si 0.96 43.85 29.55 68.60 2.03 45.88 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 2.14 6.01 -2.39 -0.01 2.13 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.61 6.32 -2.39 -0.02 1.60 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 31 H 0.05 1.92 6.17 -2.39 -0.01 1.90 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.41 13.26 8.14 -92.71 -0.75 12.50 16 34 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.11 2.21 7.87 -2.39 -0.02 2.19 16 36 H 0.07 2.07 7.73 -2.39 -0.02 2.05 16 37 H 0.09 1.64 7.92 -2.39 -0.02 1.62 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.37 18.42 7.80 -92.71 -0.72 17.70 16 44 H 0.25 14.08 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -60.34 347.68 2.46 -57.88 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.50 Total: 41.78 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.38 Total: -8.83 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.40 Total: -113.94 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.34 2.46 -57.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268202948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.543 kcal (2) G-P(sol) polarization free energy of solvation -60.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds