Wall clock time and date at job start Mon Mar 30 2020 00:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46846 * 119.99642 * 2 1 3 5 5 H 1.08991 * 109.47210 * 300.00501 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 185.00008 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47084 * 180.02562 * 10 8 7 12 12 C 1.53787 * 113.61519 * 274.13646 * 11 10 8 13 13 C 1.53950 * 87.01901 * 220.04908 * 12 11 10 14 14 C 1.53777 * 87.11423 * 25.36128 * 13 12 11 15 15 N 1.46504 * 109.46878 * 60.00402 * 4 2 1 16 16 C 1.36929 * 119.99940 * 274.99762 * 15 4 2 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 4 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 4 19 19 N 1.31625 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00548 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47349 * 119.99885 * 20 18 16 23 23 H 1.48505 * 109.47162 * 240.00080 * 20 18 16 24 24 H 1.09001 * 109.47624 * 300.00074 * 1 2 3 25 25 H 1.09002 * 109.46642 * 60.00262 * 1 2 3 26 26 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47624 * 239.99926 * 2 1 3 28 28 H 1.09001 * 109.47336 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47375 * 299.99881 * 3 2 1 30 30 H 1.09001 * 109.47456 * 59.99524 * 3 2 1 31 31 H 1.09002 * 109.47398 * 305.00335 * 6 4 2 32 32 H 1.09001 * 109.47194 * 65.00515 * 6 4 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 34 34 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 35 35 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 36 36 H 1.09000 * 112.85241 * 45.33297 * 11 10 8 37 37 H 1.09005 * 113.61080 * 334.56801 * 12 11 10 38 38 H 1.08995 * 113.61140 * 105.46656 * 12 11 10 39 39 H 1.08998 * 113.53938 * 270.80508 * 13 12 11 40 40 H 1.09008 * 113.74543 * 139.94073 * 13 12 11 41 41 H 1.09000 * 113.61641 * 220.08846 * 14 13 12 42 42 H 1.08998 * 113.69236 * 89.19744 * 14 13 12 43 43 H 0.96996 * 120.00090 * 94.99890 * 15 4 2 44 44 H 0.96994 * 120.00251 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5140 2.3805 8 6 5.3833 -1.6552 2.5824 9 8 6.1714 -1.1270 1.8270 10 6 5.8855 -2.4706 3.7460 11 6 7.4155 -2.4701 3.7465 12 6 8.0322 -3.5623 2.8568 13 6 9.0782 -3.7643 3.9682 14 6 8.0314 -3.2073 4.9473 15 7 1.5516 -2.1025 1.2493 16 6 0.3101 -2.3897 1.7504 17 1 -0.3090 -1.5981 2.1461 18 6 -0.1524 -3.6985 1.7509 19 7 0.6022 -4.6633 1.2692 20 14 -1.8464 -4.0903 2.4339 21 1 -2.4894 -2.8394 2.9104 22 1 -2.6806 -4.7013 1.3681 23 1 -1.7155 -5.0416 3.5666 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.9330 -1.1564 0.3176 32 1 3.9337 0.3019 1.3384 33 1 3.4278 -1.9368 2.9845 34 1 5.5220 -2.0367 4.6775 35 1 5.5222 -3.4944 3.6560 36 1 7.8385 -1.4796 3.5785 37 1 7.3810 -4.4238 2.7082 38 1 8.4513 -3.1816 1.9254 39 1 9.9568 -3.1284 3.8599 40 1 9.3316 -4.8092 4.1478 41 1 8.4499 -2.5405 5.7012 42 1 7.3794 -3.9705 5.3723 43 1 2.1078 -2.8135 0.8944 44 1 0.2789 -5.5778 1.2692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268202950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:32 Heat of formation + Delta-G solvation = -32.437774 kcal Electronic energy + Delta-G solvation = -21046.820949 eV Core-core repulsion = 17999.117846 eV Total energy + Delta-G solvation = -3047.703104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72695 -38.27087 -37.08137 -33.74499 -33.13104 -30.81132 -30.12985 -27.80949 -26.10266 -25.57634 -24.15928 -23.14278 -21.66541 -20.04624 -19.33347 -19.18731 -17.36283 -16.50561 -15.87245 -15.43677 -15.24894 -14.73569 -14.40461 -14.00060 -13.60105 -13.51189 -13.39319 -12.96014 -12.58783 -12.42537 -12.10836 -12.01996 -11.79203 -11.62962 -11.38047 -11.03221 -10.96269 -10.83797 -10.65709 -10.59312 -10.30424 -10.28895 -10.15614 -10.09266 -9.94501 -9.56339 -9.38485 -8.93356 -8.53368 -7.04237 -5.83851 -3.12906 3.05769 3.37463 3.44341 3.46142 3.66922 4.52191 4.62385 4.65987 4.75777 4.89004 5.23486 5.34475 5.38981 5.46181 5.53343 5.58639 5.63603 5.67526 5.74128 5.75573 5.79118 5.86177 5.93360 5.97175 6.02410 6.11690 6.19349 6.25158 6.30219 6.37871 6.46953 6.54150 6.55587 6.63568 6.70088 6.99214 7.07986 7.28939 7.65358 8.03072 8.33626 8.67622 9.45676 10.00868 10.36894 11.38105 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.004893 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.263769 B = 5721.311555 C = 7116.819108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.114 3.886 7 N -0.715 5.715 8 C 0.510 3.490 9 O -0.556 6.556 10 C -0.133 4.133 11 C -0.091 4.091 12 C -0.134 4.134 13 C -0.143 4.143 14 C -0.139 4.139 15 N -0.721 5.721 16 C -0.236 4.236 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.385 0.615 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 5.592 4.820 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.435 6.435 10 C -0.173 4.173 11 C -0.110 4.110 12 C -0.172 4.172 13 C -0.181 4.181 14 C -0.176 4.176 15 N -0.363 5.363 16 C -0.367 4.367 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.733 3.267 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.220 1.220 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.721 5.956 4.369 13.019 hybrid contribution -1.250 -0.736 0.395 1.504 sum 9.471 5.219 4.765 11.817 Atomic orbital electron populations 1.21821 0.94973 1.03874 0.98981 1.21729 0.96880 0.94417 1.00098 1.21937 1.00496 0.97337 1.00891 1.20547 0.89480 0.88124 0.95910 0.92942 1.21696 0.95511 0.94807 0.89058 1.46045 1.06881 1.52869 1.30854 1.20633 0.82372 0.80925 0.86469 1.90638 1.55571 1.49394 1.47923 1.21693 0.96737 1.01382 0.97528 1.22289 0.92874 0.99477 0.96366 1.22964 0.97989 0.98604 0.97594 1.22824 0.97128 1.00892 0.97211 1.22983 0.98330 0.99902 0.96421 1.42469 1.18076 1.01913 1.73816 1.19249 0.92800 0.92375 1.32240 0.90873 1.24726 0.98289 0.95881 1.01845 1.69672 1.36789 0.99852 1.51459 0.86201 0.84309 0.77934 0.78248 1.20548 1.21934 1.21951 0.94072 0.95008 0.89524 0.91929 0.93047 0.93583 0.93222 0.92115 0.91806 0.75452 0.89123 0.88732 0.88539 0.90232 0.91345 0.90469 0.91690 0.91690 0.90045 0.78104 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.12 16 3 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 4 C 0.17 3.12 2.18 -67.92 -0.15 2.97 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.95 4.73 -4.04 -0.02 1.93 16 7 N -0.71 -11.87 5.39 -60.29 -0.32 -12.19 16 8 C 0.51 8.34 7.83 -10.98 -0.09 8.25 16 9 O -0.56 -10.72 15.79 5.56 0.09 -10.64 16 10 C -0.13 -1.70 5.52 -27.88 -0.15 -1.85 16 11 C -0.09 -1.10 3.11 -89.81 -0.28 -1.38 16 12 C -0.13 -1.61 7.65 -25.83 -0.20 -1.81 16 13 C -0.14 -1.41 8.09 -25.83 -0.21 -1.62 16 14 C -0.14 -1.36 7.65 -25.92 -0.20 -1.56 16 15 N -0.72 -16.25 4.44 -53.42 -0.24 -16.48 16 16 C -0.24 -5.90 7.57 -15.06 -0.11 -6.01 16 17 H 0.07 1.80 7.40 -52.48 -0.39 1.42 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 20 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.04 6.71 -51.93 -0.35 0.69 16 33 H 0.41 6.83 8.14 -40.82 -0.33 6.50 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 36 H 0.10 1.28 7.73 -51.93 -0.40 0.88 16 37 H 0.08 0.96 7.92 -51.93 -0.41 0.55 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 43 H 0.38 9.55 7.80 -40.82 -0.32 9.23 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -28.45 349.33 -8.50 -36.96 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -7.89 Total: 14.18 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.11 Total: -7.56 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.16 Total: -54.46 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.45 -8.50 -36.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268202950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.518 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds