Wall clock time and date at job start Mon Mar 30 2020 00:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47121 * 2 1 4 4 C 1.53006 * 109.46846 * 119.99642 * 2 1 3 5 5 H 1.08991 * 109.47210 * 300.00501 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 4 2 1 7 7 N 1.46499 * 109.46840 * 185.00008 * 6 4 2 8 8 C 1.34779 * 119.99872 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00071 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47084 * 180.02562 * 10 8 7 12 12 C 1.53787 * 113.61519 * 274.13646 * 11 10 8 13 13 C 1.53950 * 87.01901 * 220.04908 * 12 11 10 14 14 C 1.53777 * 87.11423 * 25.36128 * 13 12 11 15 15 N 1.46504 * 109.46878 * 60.00402 * 4 2 1 16 16 C 1.36929 * 119.99940 * 274.99762 * 15 4 2 17 17 H 1.08007 * 120.00260 * 359.97438 * 16 15 4 18 18 C 1.38808 * 120.00410 * 180.02562 * 16 15 4 19 19 N 1.31625 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00548 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46871 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47349 * 119.99885 * 20 18 16 23 23 H 1.48505 * 109.47162 * 240.00080 * 20 18 16 24 24 H 1.09001 * 109.47624 * 300.00074 * 1 2 3 25 25 H 1.09002 * 109.46642 * 60.00262 * 1 2 3 26 26 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47624 * 239.99926 * 2 1 3 28 28 H 1.09001 * 109.47336 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47375 * 299.99881 * 3 2 1 30 30 H 1.09001 * 109.47456 * 59.99524 * 3 2 1 31 31 H 1.09002 * 109.47398 * 305.00335 * 6 4 2 32 32 H 1.09001 * 109.47194 * 65.00515 * 6 4 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 7 6 4 34 34 H 1.09002 * 109.47152 * 300.00160 * 10 8 7 35 35 H 1.09001 * 109.46980 * 60.00059 * 10 8 7 36 36 H 1.09000 * 112.85241 * 45.33297 * 11 10 8 37 37 H 1.09005 * 113.61080 * 334.56801 * 12 11 10 38 38 H 1.08995 * 113.61140 * 105.46656 * 12 11 10 39 39 H 1.08998 * 113.53938 * 270.80508 * 13 12 11 40 40 H 1.09008 * 113.74543 * 139.94073 * 13 12 11 41 41 H 1.09000 * 113.61641 * 220.08846 * 14 13 12 42 42 H 1.08998 * 113.69236 * 89.19744 * 14 13 12 43 43 H 0.96996 * 120.00090 * 94.99890 * 15 4 2 44 44 H 0.96994 * 120.00251 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 4.0582 -1.5140 2.3805 8 6 5.3833 -1.6552 2.5824 9 8 6.1714 -1.1270 1.8270 10 6 5.8855 -2.4706 3.7460 11 6 7.4155 -2.4701 3.7465 12 6 8.0322 -3.5623 2.8568 13 6 9.0782 -3.7643 3.9682 14 6 8.0314 -3.2073 4.9473 15 7 1.5516 -2.1025 1.2493 16 6 0.3101 -2.3897 1.7504 17 1 -0.3090 -1.5981 2.1461 18 6 -0.1524 -3.6985 1.7509 19 7 0.6022 -4.6633 1.2692 20 14 -1.8464 -4.0903 2.4339 21 1 -2.4894 -2.8394 2.9104 22 1 -2.6806 -4.7013 1.3681 23 1 -1.7155 -5.0416 3.5666 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.9330 -1.1564 0.3176 32 1 3.9337 0.3019 1.3384 33 1 3.4278 -1.9368 2.9845 34 1 5.5220 -2.0367 4.6775 35 1 5.5222 -3.4944 3.6560 36 1 7.8385 -1.4796 3.5785 37 1 7.3810 -4.4238 2.7082 38 1 8.4513 -3.1816 1.9254 39 1 9.9568 -3.1284 3.8599 40 1 9.3316 -4.8092 4.1478 41 1 8.4499 -2.5405 5.7012 42 1 7.3794 -3.9705 5.3723 43 1 2.1078 -2.8135 0.8944 44 1 0.2789 -5.5778 1.2692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268202950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:32 Heat of formation + Delta-G solvation = -49.296986 kcal Electronic energy + Delta-G solvation = -21047.552020 eV Core-core repulsion = 17999.117846 eV Total energy + Delta-G solvation = -3048.434174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.95304 -39.39259 -38.51897 -35.19228 -34.90775 -32.28952 -31.54852 -29.27698 -27.46480 -26.43889 -25.75178 -24.45922 -23.07195 -21.39743 -20.64545 -20.21712 -19.18267 -17.84755 -17.18534 -16.87536 -16.55598 -16.03780 -15.68054 -15.39911 -15.19687 -14.84550 -14.80375 -14.40164 -13.92127 -13.52540 -13.42929 -13.27601 -12.90905 -12.87390 -12.74619 -12.70143 -12.45905 -12.28778 -12.26639 -11.96349 -11.75813 -11.49323 -11.44785 -11.28478 -11.21672 -11.03957 -10.88726 -10.64650 -9.93850 -8.95384 -7.87202 -5.14275 1.49619 1.52314 1.59754 1.74837 2.38507 2.60464 3.46283 3.67506 3.77849 3.85275 3.87782 3.94614 4.02316 4.14235 4.30063 4.32438 4.46154 4.53134 4.60375 4.67181 4.73359 4.79528 4.90543 4.92393 4.93139 4.98978 5.04344 5.08037 5.12437 5.15637 5.18487 5.26850 5.34119 5.42570 5.57158 5.62697 5.65359 5.67216 5.77429 6.33183 6.68384 7.34676 7.41115 8.12297 8.37741 9.36040 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.004893 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.263769 B = 5721.311555 C = 7116.819108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.123 3.877 7 N -0.716 5.716 8 C 0.506 3.494 9 O -0.588 6.588 10 C -0.127 4.127 11 C -0.097 4.097 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.127 4.127 15 N -0.727 5.727 16 C -0.213 4.213 17 H 0.080 0.920 18 C -0.071 4.071 19 N -0.969 5.969 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.303 1.303 23 H -0.298 1.298 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.410 0.590 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.372 0.628 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 6.925 6.170 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.075 0.925 6 C -0.002 4.002 7 N -0.366 5.366 8 C 0.294 3.706 9 O -0.469 6.469 10 C -0.167 4.167 11 C -0.115 4.115 12 C -0.182 4.182 13 C -0.173 4.173 14 C -0.164 4.164 15 N -0.367 5.367 16 C -0.345 4.345 17 H 0.097 0.903 18 C -0.264 4.264 19 N -0.620 5.620 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.231 1.231 23 H -0.225 1.225 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.246 0.754 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.204 0.796 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.841 7.344 5.737 14.296 hybrid contribution -1.260 -1.048 -0.084 1.641 sum 9.580 6.297 5.652 12.782 Atomic orbital electron populations 1.21733 0.95380 1.01760 1.00315 1.21633 0.96430 0.96311 0.98492 1.21844 1.00828 0.94942 1.02180 1.20677 0.90185 0.86048 0.96680 0.92506 1.21561 0.94466 0.95506 0.88693 1.46082 1.07204 1.52792 1.30567 1.21297 0.81810 0.80549 0.86954 1.90621 1.56185 1.50835 1.49304 1.21740 0.97204 1.00950 0.96767 1.22302 0.92325 0.98932 0.97991 1.23019 0.99067 0.98568 0.97574 1.22810 0.96835 1.01840 0.95798 1.22943 0.97885 0.99796 0.95774 1.42581 1.17265 1.03369 1.73477 1.19517 0.93202 0.92109 1.29674 0.90251 1.25346 1.01243 0.96175 1.03593 1.69813 1.38350 0.99745 1.54102 0.85289 0.80994 0.77825 0.76988 1.19047 1.23094 1.22533 0.93383 0.93066 0.93210 0.93342 0.92469 0.92095 0.92156 0.93862 0.90386 0.75392 0.86756 0.88221 0.89956 0.90568 0.93216 0.89872 0.90511 0.90302 0.89100 0.79627 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.26 71.98 0.59 -4.03 16 2 C -0.11 -3.52 2.69 -10.79 -0.03 -3.55 16 3 C -0.14 -3.59 8.84 71.98 0.64 -2.95 16 4 C 0.17 6.18 2.18 44.99 0.10 6.28 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.12 4.13 4.73 86.38 0.41 4.53 16 7 N -0.72 -23.37 5.39 -463.05 -2.49 -25.87 16 8 C 0.51 16.33 7.83 87.66 0.69 17.01 16 9 O -0.59 -22.76 15.79 -3.02 -0.05 -22.80 16 10 C -0.13 -3.07 5.52 29.85 0.16 -2.90 16 11 C -0.10 -2.23 3.11 -10.27 -0.03 -2.26 16 12 C -0.14 -3.43 7.65 31.18 0.24 -3.19 16 13 C -0.14 -2.43 8.09 31.18 0.25 -2.18 16 14 C -0.13 -2.18 7.65 31.12 0.24 -1.94 16 15 N -0.73 -32.77 4.44 -322.94 -1.43 -34.20 16 16 C -0.21 -10.59 7.57 84.03 0.64 -9.96 16 17 H 0.08 3.81 7.40 -2.91 -0.02 3.79 16 18 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 19 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 20 Si 0.96 43.99 29.55 68.60 2.03 46.02 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.06 1.41 6.54 -2.39 -0.02 1.39 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 2.43 6.71 -2.39 -0.02 2.41 16 33 H 0.41 13.40 8.14 -92.71 -0.75 12.64 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 2.34 7.88 -2.39 -0.02 2.33 16 36 H 0.08 2.15 7.73 -2.39 -0.02 2.13 16 37 H 0.08 1.82 7.92 -2.38 -0.02 1.81 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.42 8.10 -2.39 -0.02 1.40 16 43 H 0.37 18.78 7.80 -92.71 -0.72 18.06 16 44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -61.27 349.33 2.19 -59.08 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.50 Total: 42.35 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.36 Total: -8.50 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.65 Total: -116.14 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -61.27 2.19 -59.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268202950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.778 kcal (2) G-P(sol) polarization free energy of solvation -61.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds