Wall clock time and date at job start Mon Mar 30 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 C 1.53000 * 109.47337 * 119.99740 * 2 1 3 5 5 H 1.09007 * 109.47013 * 59.99858 * 4 2 1 6 6 C 1.53001 * 109.47156 * 299.99931 * 4 2 1 7 7 N 1.46499 * 109.47305 * 184.99718 * 6 4 2 8 8 C 1.34768 * 120.00332 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00092 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00508 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47375 * 185.54325 * 10 8 7 12 12 C 1.53002 * 115.55022 * 279.64191 * 11 10 8 13 13 C 1.53002 * 117.49769 * 133.93655 * 11 10 8 14 14 C 1.52998 * 117.49736 * 65.31574 * 11 10 8 15 15 N 1.46499 * 109.47177 * 180.02562 * 4 2 1 16 16 C 1.36939 * 119.99885 * 274.99866 * 15 4 2 17 17 H 1.08001 * 119.99644 * 0.02562 * 16 15 4 18 18 C 1.38812 * 120.00048 * 179.97438 * 16 15 4 19 19 N 1.31615 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99879 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47011 * 60.00549 * 20 18 16 22 22 H 1.48505 * 109.46693 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46820 * 299.99894 * 20 18 16 24 24 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46837 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.47218 * 59.99881 * 1 2 3 27 27 H 1.09000 * 109.46837 * 239.99963 * 2 1 3 28 28 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46591 * 299.99535 * 3 2 1 30 30 H 1.08993 * 109.47662 * 59.99993 * 3 2 1 31 31 H 1.09002 * 109.46876 * 64.99985 * 6 4 2 32 32 H 1.09000 * 109.47234 * 304.99978 * 6 4 2 33 33 H 0.97000 * 119.99538 * 359.72926 * 7 6 4 34 34 H 1.08998 * 109.47156 * 305.54767 * 10 8 7 35 35 H 1.09006 * 109.46666 * 65.54363 * 10 8 7 36 36 H 1.08992 * 109.46909 * 65.00037 * 12 11 10 37 37 H 1.08999 * 109.46720 * 185.00453 * 12 11 10 38 38 H 1.09001 * 109.47351 * 304.99859 * 12 11 10 39 39 H 1.09002 * 117.50045 * 0.02562 * 13 11 10 40 40 H 1.08998 * 117.49898 * 145.01863 * 13 11 10 41 41 H 1.09003 * 117.49394 * 214.97132 * 14 11 10 42 42 H 1.08990 * 117.50023 * 359.97438 * 14 11 10 43 43 H 0.96991 * 120.00311 * 95.00005 * 15 4 2 44 44 H 0.97006 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5301 0.0001 2.4985 7 7 2.1143 -0.6174 3.6916 8 6 1.8062 -0.1436 4.9151 9 8 1.0450 0.7938 5.0285 10 6 2.4066 -0.7792 6.1425 11 6 1.7929 -0.1500 7.3948 12 6 2.3796 1.2008 7.8098 13 6 1.3360 -1.0944 8.5085 14 6 0.3000 -0.3773 7.6404 15 7 3.5051 -0.7206 1.2495 16 6 4.1903 -1.6918 0.5693 17 1 3.6506 -2.4578 0.0324 18 6 5.5784 -1.6910 0.5691 19 7 6.2360 -0.7571 1.2231 20 14 6.5130 -3.0154 -0.3593 21 1 6.1541 -2.9574 -1.7991 22 1 7.9729 -2.7926 -0.2033 23 1 6.1550 -4.3490 0.1870 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 0.4438 -0.0768 2.5444 32 1 1.8185 1.0504 2.4548 33 1 2.7200 -1.3696 3.6012 34 1 2.2004 -1.8495 6.1353 35 1 3.4845 -0.6170 6.1453 36 1 2.1608 1.9431 7.0423 37 1 1.9368 1.5141 8.7552 38 1 3.4592 1.1073 7.9276 39 1 1.4729 -2.1639 8.3492 40 1 1.4533 -0.7535 9.5371 41 1 -0.2641 0.4353 8.0982 42 1 -0.2450 -0.9748 6.9097 43 1 3.9897 -0.0324 1.7315 44 1 7.2060 -0.7567 1.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268215147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:28 Heat of formation + Delta-G solvation = -23.290829 kcal Electronic energy + Delta-G solvation = -21244.402467 eV Core-core repulsion = 18197.096004 eV Total energy + Delta-G solvation = -3047.306462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.67180 -37.87490 -36.87440 -33.61291 -33.24161 -30.49995 -29.71971 -28.25292 -26.79280 -26.55982 -23.77899 -22.48555 -22.36320 -20.38559 -19.11059 -18.36735 -17.34848 -16.39567 -15.97463 -15.54116 -14.96536 -14.71509 -14.11429 -13.86864 -13.68433 -13.47645 -13.22938 -13.03827 -12.74882 -12.51246 -12.23826 -12.04370 -11.84503 -11.48034 -11.41475 -11.13370 -11.10232 -10.97475 -10.87528 -10.60337 -10.35198 -10.23448 -10.21598 -9.80097 -9.75710 -9.67076 -9.24880 -8.93497 -8.49090 -7.03634 -5.83159 -3.12828 3.07661 3.38979 3.44565 3.45156 3.51156 4.02152 4.53173 4.67654 4.82401 4.95270 5.07175 5.30975 5.39740 5.43997 5.51320 5.57163 5.64092 5.64328 5.70845 5.76335 5.86032 5.89984 5.95316 6.00696 6.01706 6.10551 6.11584 6.17739 6.21584 6.34418 6.37253 6.39808 6.48812 6.65779 6.76104 6.93355 7.04869 7.09321 7.64195 8.04765 8.34495 8.69902 9.46541 10.01628 10.37599 11.38614 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.005135 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.613986 B = 5451.299818 C = 6627.439579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.140 4.140 4 C 0.170 3.830 5 H 0.052 0.948 6 C 0.112 3.888 7 N -0.716 5.716 8 C 0.510 3.490 9 O -0.548 6.548 10 C -0.107 4.107 11 C -0.105 4.105 12 C -0.113 4.113 13 C -0.182 4.182 14 C -0.157 4.157 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.408 0.592 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.706 0.240 9.014 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.070 0.930 6 C -0.012 4.012 7 N -0.368 5.368 8 C 0.296 3.704 9 O -0.426 6.426 10 C -0.147 4.147 11 C -0.105 4.105 12 C -0.170 4.170 13 C -0.219 4.219 14 C -0.194 4.194 15 N -0.361 5.361 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.155 0.764 8.993 13.586 hybrid contribution 1.096 -0.887 -0.618 1.540 sum -9.059 -0.124 8.374 12.337 Atomic orbital electron populations 1.21922 0.96789 1.00917 1.00995 1.21721 0.93554 0.97178 1.00830 1.21765 1.02584 0.95627 0.99767 1.20508 0.86356 0.96589 0.90615 0.93039 1.21761 0.97059 0.97862 0.84537 1.46044 1.48854 1.36494 1.05400 1.20520 0.81500 0.83770 0.84621 1.90645 1.36482 1.28592 1.86903 1.21220 1.01857 1.00379 0.91240 1.21013 0.97291 0.96979 0.95236 1.21295 0.99981 0.94776 1.00904 1.23173 1.04803 0.97980 0.95913 1.22842 0.91736 1.02610 1.02220 1.42432 0.98737 1.33454 1.61430 1.19170 0.88922 1.04632 1.24621 0.91247 1.24714 0.96407 0.98639 1.00754 1.69649 1.06993 1.34872 1.46282 0.86312 0.79045 0.81371 0.79677 1.21330 1.21770 1.21312 0.93275 0.92937 0.93557 0.91027 0.91380 0.94308 0.93558 0.91941 0.91574 0.75556 0.89272 0.88239 0.91305 0.92898 0.92485 0.88982 0.88964 0.89050 0.89228 0.78023 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.84 37.16 0.33 -1.76 16 2 C -0.11 -1.89 2.91 -90.62 -0.26 -2.16 16 3 C -0.14 -2.40 8.69 37.16 0.32 -2.08 16 4 C 0.17 3.13 2.27 -67.93 -0.15 2.97 16 5 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 6 C 0.11 1.92 4.51 -4.04 -0.02 1.90 16 7 N -0.72 -11.87 5.39 -60.29 -0.32 -12.20 16 8 C 0.51 8.29 7.69 -10.99 -0.08 8.20 16 9 O -0.55 -10.33 14.96 5.55 0.08 -10.25 16 10 C -0.11 -1.39 5.64 -27.89 -0.16 -1.55 16 11 C -0.10 -1.29 1.59 -154.51 -0.25 -1.54 16 12 C -0.11 -1.36 9.66 37.16 0.36 -1.00 16 13 C -0.18 -1.87 9.87 -26.73 -0.26 -2.13 16 14 C -0.16 -1.88 9.19 -26.73 -0.25 -2.13 16 15 N -0.72 -16.31 3.80 -53.42 -0.20 -16.52 16 16 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 20 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.75 6.32 -51.93 -0.33 0.43 16 31 H 0.06 1.02 6.71 -51.93 -0.35 0.67 16 32 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 33 H 0.41 6.84 8.14 -40.82 -0.33 6.51 16 34 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 35 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 37 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.39 9.56 7.80 -40.82 -0.32 9.24 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -28.61 352.84 -7.89 -36.50 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -7.80 Total: 14.59 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.67 Total: -7.96 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.20 Total: -54.63 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.61 -7.89 -36.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268215147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.210 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds