Wall clock time and date at job start Mon Mar 30 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 C 1.53000 * 109.47337 * 119.99740 * 2 1 3 5 5 H 1.09007 * 109.47013 * 59.99858 * 4 2 1 6 6 C 1.53001 * 109.47156 * 299.99931 * 4 2 1 7 7 N 1.46499 * 109.47305 * 184.99718 * 6 4 2 8 8 C 1.34768 * 120.00332 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00092 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00508 * 179.97438 * 8 7 6 11 11 C 1.52995 * 109.47375 * 185.54325 * 10 8 7 12 12 C 1.53002 * 115.55022 * 279.64191 * 11 10 8 13 13 C 1.53002 * 117.49769 * 133.93655 * 11 10 8 14 14 C 1.52998 * 117.49736 * 65.31574 * 11 10 8 15 15 N 1.46499 * 109.47177 * 180.02562 * 4 2 1 16 16 C 1.36939 * 119.99885 * 274.99866 * 15 4 2 17 17 H 1.08001 * 119.99644 * 0.02562 * 16 15 4 18 18 C 1.38812 * 120.00048 * 179.97438 * 16 15 4 19 19 N 1.31615 * 119.99887 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99879 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47011 * 60.00549 * 20 18 16 22 22 H 1.48505 * 109.46693 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46820 * 299.99894 * 20 18 16 24 24 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46837 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.47218 * 59.99881 * 1 2 3 27 27 H 1.09000 * 109.46837 * 239.99963 * 2 1 3 28 28 H 1.09006 * 109.46830 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46591 * 299.99535 * 3 2 1 30 30 H 1.08993 * 109.47662 * 59.99993 * 3 2 1 31 31 H 1.09002 * 109.46876 * 64.99985 * 6 4 2 32 32 H 1.09000 * 109.47234 * 304.99978 * 6 4 2 33 33 H 0.97000 * 119.99538 * 359.72926 * 7 6 4 34 34 H 1.08998 * 109.47156 * 305.54767 * 10 8 7 35 35 H 1.09006 * 109.46666 * 65.54363 * 10 8 7 36 36 H 1.08992 * 109.46909 * 65.00037 * 12 11 10 37 37 H 1.08999 * 109.46720 * 185.00453 * 12 11 10 38 38 H 1.09001 * 109.47351 * 304.99859 * 12 11 10 39 39 H 1.09002 * 117.50045 * 0.02562 * 13 11 10 40 40 H 1.08998 * 117.49898 * 145.01863 * 13 11 10 41 41 H 1.09003 * 117.49394 * 214.97132 * 14 11 10 42 42 H 1.08990 * 117.50023 * 359.97438 * 14 11 10 43 43 H 0.96991 * 120.00311 * 95.00005 * 15 4 2 44 44 H 0.97006 * 120.00206 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5301 0.0001 2.4985 7 7 2.1143 -0.6174 3.6916 8 6 1.8062 -0.1436 4.9151 9 8 1.0450 0.7938 5.0285 10 6 2.4066 -0.7792 6.1425 11 6 1.7929 -0.1500 7.3948 12 6 2.3796 1.2008 7.8098 13 6 1.3360 -1.0944 8.5085 14 6 0.3000 -0.3773 7.6404 15 7 3.5051 -0.7206 1.2495 16 6 4.1903 -1.6918 0.5693 17 1 3.6506 -2.4578 0.0324 18 6 5.5784 -1.6910 0.5691 19 7 6.2360 -0.7571 1.2231 20 14 6.5130 -3.0154 -0.3593 21 1 6.1541 -2.9574 -1.7991 22 1 7.9729 -2.7926 -0.2033 23 1 6.1550 -4.3490 0.1870 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 0.4438 -0.0768 2.5444 32 1 1.8185 1.0504 2.4548 33 1 2.7200 -1.3696 3.6012 34 1 2.2004 -1.8495 6.1353 35 1 3.4845 -0.6170 6.1453 36 1 2.1608 1.9431 7.0423 37 1 1.9368 1.5141 8.7552 38 1 3.4592 1.1073 7.9276 39 1 1.4729 -2.1639 8.3492 40 1 1.4533 -0.7535 9.5371 41 1 -0.2641 0.4353 8.0982 42 1 -0.2450 -0.9748 6.9097 43 1 3.9897 -0.0324 1.7315 44 1 7.2060 -0.7567 1.2233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268215147.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:27 Heat of formation + Delta-G solvation = -39.948457 kcal Electronic energy + Delta-G solvation = -21245.124796 eV Core-core repulsion = 18197.096004 eV Total energy + Delta-G solvation = -3048.028791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92652 -39.15096 -38.12577 -35.11800 -34.96061 -32.23277 -30.91730 -29.32651 -28.17931 -27.90034 -25.56531 -24.00984 -23.25025 -21.64946 -20.34519 -19.62760 -19.23896 -17.71292 -17.36463 -16.82245 -16.36681 -16.09839 -15.51514 -15.24712 -15.00363 -14.94240 -14.80197 -14.31815 -14.04954 -13.64563 -13.63788 -13.21379 -12.90479 -12.82888 -12.79666 -12.65012 -12.45944 -12.31137 -12.19759 -12.14151 -12.06015 -11.86665 -11.50395 -11.21748 -11.17601 -10.90218 -10.79319 -10.38060 -9.87932 -8.95810 -7.88874 -5.16686 1.51095 1.52137 1.57920 1.78504 2.32555 2.59615 3.01433 3.44854 3.73960 3.86580 3.90759 3.92586 4.01198 4.13409 4.23487 4.28471 4.37755 4.46955 4.53729 4.62306 4.72744 4.76417 4.83521 4.87305 4.95224 4.98093 5.03293 5.08898 5.09943 5.15997 5.20586 5.25694 5.31114 5.31963 5.40725 5.51801 5.56164 5.63824 5.71030 6.31643 6.71032 7.38275 7.39633 8.12312 8.37508 9.33582 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015963 B = 0.005135 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.613986 B = 5451.299818 C = 6627.439579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.171 3.829 5 H 0.054 0.946 6 C 0.122 3.878 7 N -0.718 5.718 8 C 0.507 3.493 9 O -0.576 6.576 10 C -0.103 4.103 11 C -0.125 4.125 12 C -0.110 4.110 13 C -0.155 4.155 14 C -0.168 4.168 15 N -0.724 5.724 16 C -0.232 4.232 17 H 0.075 0.925 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.964 3.036 21 H -0.284 1.284 22 H -0.301 1.301 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.408 0.592 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.373 0.627 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 -0.874 9.560 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.062 3.938 5 H 0.072 0.928 6 C -0.002 4.002 7 N -0.369 5.369 8 C 0.295 3.705 9 O -0.456 6.456 10 C -0.142 4.142 11 C -0.125 4.125 12 C -0.167 4.167 13 C -0.192 4.192 14 C -0.205 4.205 15 N -0.364 5.364 16 C -0.364 4.364 17 H 0.093 0.907 18 C -0.260 4.260 19 N -0.617 5.617 20 Si 0.794 3.206 21 H -0.211 1.211 22 H -0.228 1.228 23 H -0.204 1.204 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.244 0.756 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.205 0.795 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.433 -0.373 9.528 14.887 hybrid contribution 1.385 -0.509 -0.795 1.676 sum -10.048 -0.882 8.733 13.342 Atomic orbital electron populations 1.21834 0.93844 1.01995 1.02082 1.21616 0.95959 0.96445 0.98892 1.21686 1.00202 0.96162 1.01021 1.20651 0.83966 0.97131 0.92012 0.92790 1.21601 0.97639 0.96771 0.84195 1.46085 1.48831 1.36433 1.05564 1.21121 0.80917 0.83288 0.85214 1.90629 1.37828 1.29843 1.87282 1.21252 1.01789 1.01286 0.89887 1.21091 0.97589 0.97792 0.96035 1.21263 1.00609 0.94173 1.00696 1.23248 1.01838 0.98227 0.95885 1.22844 0.91621 1.03140 1.02945 1.42502 1.00450 1.32483 1.60955 1.19499 0.89163 1.04511 1.23221 0.90697 1.25373 0.97429 1.00746 1.02412 1.69800 1.06518 1.36878 1.48463 0.85362 0.77166 0.79530 0.78550 1.21100 1.22817 1.20350 0.92236 0.92336 0.91999 0.92885 0.94898 0.92439 0.92913 0.90617 0.93053 0.75605 0.87267 0.87844 0.94012 0.91396 0.91810 0.87674 0.87363 0.89070 0.90127 0.79460 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.84 71.98 0.64 -2.94 16 2 C -0.11 -3.56 2.91 -10.79 -0.03 -3.59 16 3 C -0.13 -4.51 8.69 71.98 0.63 -3.88 16 4 C 0.17 6.20 2.27 44.99 0.10 6.30 16 5 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 6 C 0.12 4.11 4.51 86.38 0.39 4.50 16 7 N -0.72 -23.50 5.39 -463.06 -2.49 -26.00 16 8 C 0.51 16.26 7.69 87.66 0.67 16.93 16 9 O -0.58 -21.68 14.96 -3.05 -0.05 -21.73 16 10 C -0.10 -2.54 5.64 29.85 0.17 -2.37 16 11 C -0.12 -2.89 1.59 -52.18 -0.08 -2.98 16 12 C -0.11 -2.58 9.66 71.98 0.70 -1.88 16 13 C -0.16 -2.76 9.87 30.59 0.30 -2.46 16 14 C -0.17 -3.80 9.19 30.59 0.28 -3.52 16 15 N -0.72 -33.06 3.80 -322.93 -1.23 -34.28 16 16 C -0.23 -11.87 9.93 84.03 0.83 -11.03 16 17 H 0.08 3.70 7.83 -2.91 -0.02 3.67 16 18 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 19 N -0.97 -56.39 13.06 21.65 0.28 -56.11 16 20 Si 0.96 44.28 29.55 68.60 2.03 46.31 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.03 1.32 7.60 -2.38 -0.02 1.31 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.69 6.32 -2.39 -0.02 1.68 16 31 H 0.08 2.36 6.71 -2.39 -0.02 2.34 16 32 H 0.05 1.89 6.17 -2.39 -0.01 1.88 16 33 H 0.41 13.51 8.14 -92.71 -0.75 12.75 16 34 H 0.11 2.24 7.94 -2.39 -0.02 2.22 16 35 H 0.10 2.49 8.13 -2.38 -0.02 2.47 16 36 H 0.04 1.18 7.60 -2.39 -0.02 1.16 16 37 H 0.07 1.33 8.09 -2.39 -0.02 1.32 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.62 8.08 -2.39 -0.02 1.60 16 40 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.37 18.92 7.80 -92.71 -0.72 18.20 16 44 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -61.37 352.84 3.10 -58.26 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -0.50 Total: 43.64 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.06 Total: -10.09 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.44 Total: -116.39 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.37 3.10 -58.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268215147.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.316 kcal (2) G-P(sol) polarization free energy of solvation -61.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds