Wall clock time and date at job start Mon Mar 30 2020 00:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 C 1.53003 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.56028 * 29.31469 * 4 3 2 6 6 C 1.53075 * 117.49527 * 243.60252 * 4 3 2 7 7 C 1.52998 * 59.98443 * 252.51635 * 6 4 3 8 8 H 1.08997 * 117.50499 * 107.50157 * 7 6 4 9 9 C 1.50706 * 117.49455 * 252.50041 * 7 6 4 10 10 O 1.21276 * 120.00008 * 68.74781 * 9 7 6 11 11 N 1.34774 * 119.99756 * 248.74286 * 9 7 6 12 12 C 1.46500 * 120.00484 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99882 * 180.02562 * 11 9 7 14 14 C 1.52991 * 109.47207 * 270.00312 * 13 11 9 15 15 N 1.46500 * 109.47207 * 179.97438 * 14 13 11 16 16 C 1.46504 * 120.00165 * 269.99909 * 15 14 13 17 17 C 1.36941 * 120.00049 * 89.99965 * 15 14 13 18 18 H 1.07999 * 120.00269 * 213.51551 * 17 15 14 19 19 C 1.38809 * 120.00008 * 33.51724 * 17 15 14 20 20 N 1.31621 * 120.00086 * 27.80019 * 19 17 15 21 21 Si 1.86799 * 119.99953 * 207.79687 * 19 17 15 22 22 H 1.48501 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47275 * 120.00050 * 21 19 17 24 24 H 1.48505 * 109.47119 * 239.99990 * 21 19 17 25 25 H 1.08993 * 109.47135 * 299.99817 * 1 2 3 26 26 H 1.08996 * 109.47216 * 59.99674 * 1 2 3 27 27 H 1.08995 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47013 * 240.00469 * 2 1 3 29 29 H 1.08996 * 109.47216 * 120.00326 * 2 1 3 30 30 H 1.09004 * 109.47424 * 59.99943 * 3 2 1 31 31 H 1.08998 * 109.47831 * 300.00126 * 3 2 1 32 32 H 1.08999 * 117.51218 * 145.03436 * 6 4 3 33 33 H 1.09000 * 117.51265 * 359.97438 * 6 4 3 34 34 H 1.09001 * 109.47326 * 270.00543 * 12 11 9 35 35 H 1.09007 * 109.46788 * 29.99497 * 12 11 9 36 36 H 1.08994 * 109.47625 * 149.99309 * 12 11 9 37 37 H 1.09007 * 109.47147 * 150.00096 * 13 11 9 38 38 H 1.09000 * 109.47326 * 30.00482 * 13 11 9 39 39 H 1.09000 * 109.47665 * 60.00363 * 14 13 11 40 40 H 1.08998 * 109.47437 * 299.99591 * 14 13 11 41 41 H 1.09001 * 109.47420 * 266.13520 * 16 15 14 42 42 H 1.08999 * 109.46477 * 26.13748 * 16 15 14 43 43 H 1.09000 * 109.46919 * 146.13011 * 16 15 14 44 44 H 0.97002 * 119.99898 * 5.70258 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0406 0.5849 -0.4805 6 6 4.2762 2.0463 1.2171 7 6 4.2765 2.7944 -0.1175 8 1 3.6514 3.6838 -0.1961 9 6 5.5697 2.8385 -0.8901 10 8 6.0116 1.8264 -1.3911 11 7 6.2351 4.0029 -1.0242 12 6 5.7016 5.2255 -0.4186 13 6 7.4919 4.0459 -1.7757 14 6 8.6627 3.7813 -0.8271 15 7 9.9195 3.8237 -1.5787 16 6 10.4526 2.6007 -2.1841 17 6 10.5959 5.0065 -1.7155 18 1 11.1502 5.2102 -2.6197 19 6 10.5692 5.9436 -0.6918 20 7 10.4026 5.5529 0.5540 21 14 10.7698 7.7593 -1.0823 22 1 10.9402 7.9347 -2.5471 23 1 9.5629 8.4986 -0.6329 24 1 11.9652 8.2881 -0.3775 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.2113 1.5861 1.5363 33 1 3.6508 2.4438 2.0165 34 1 5.0468 5.7279 -1.1306 35 1 5.1359 4.9701 0.4775 36 1 6.5249 5.8881 -0.1519 37 1 7.6090 5.0290 -2.2320 38 1 7.4759 3.2836 -2.5546 39 1 8.5457 2.7982 -0.3709 40 1 8.6789 4.5437 -0.0483 41 1 11.1602 2.1345 -1.4985 42 1 9.6346 1.9097 -2.3876 43 1 10.9597 2.8482 -3.1167 44 1 10.3814 4.6068 0.7668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268249371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:10 Heat of formation + Delta-G solvation = -5.442379 kcal Electronic energy + Delta-G solvation = -20932.916096 eV Core-core repulsion = 17886.383601 eV Total energy + Delta-G solvation = -3046.532495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91839 -37.42353 -36.07306 -34.80863 -34.00541 -31.25768 -29.26679 -27.63462 -26.32491 -25.40374 -24.54969 -22.53200 -22.00946 -20.72044 -20.26599 -18.56912 -17.36078 -16.92618 -15.82258 -15.39731 -15.14228 -14.59231 -14.28094 -13.97115 -13.76176 -13.47956 -13.42316 -12.94973 -12.77133 -12.60824 -12.29045 -12.25452 -12.11149 -11.75750 -11.49648 -11.30962 -11.18845 -11.09169 -11.01478 -10.82027 -10.72658 -10.27278 -10.10020 -10.04294 -9.93851 -9.48679 -9.33606 -8.43357 -8.26770 -6.80271 -6.05439 -3.34275 2.76052 3.30903 3.47542 3.49810 3.64594 3.86417 4.41886 4.58304 4.69407 4.74252 4.89276 4.96856 5.03878 5.17129 5.27424 5.34775 5.42287 5.52026 5.59094 5.60456 5.63602 5.66388 5.67443 5.82437 5.89255 5.97723 6.02020 6.03929 6.06259 6.27952 6.30095 6.43098 6.51035 6.65888 6.76801 6.81869 6.96050 7.32204 7.80972 8.07029 8.52508 8.57385 9.12016 9.81744 10.27450 11.12959 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.003809 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.995403 B = 7349.793329 C = 7794.266580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.121 4.121 5 H 0.116 0.884 6 C -0.148 4.148 7 C -0.187 4.187 8 H 0.120 0.880 9 C 0.537 3.463 10 O -0.547 6.547 11 N -0.604 5.604 12 C 0.078 3.922 13 C 0.100 3.900 14 C 0.127 3.873 15 N -0.600 5.600 16 C 0.123 3.877 17 C -0.351 4.351 18 H 0.054 0.946 19 C -0.024 4.024 20 N -0.904 5.904 21 Si 1.064 2.936 22 H -0.291 1.291 23 H -0.289 1.289 24 H -0.293 1.293 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.083 0.917 41 H 0.003 0.997 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.213 -4.905 0.892 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.126 4.126 4 C -0.140 4.140 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.208 4.208 8 H 0.138 0.862 9 C 0.325 3.675 10 O -0.425 6.425 11 N -0.337 5.337 12 C -0.065 4.065 13 C -0.024 4.024 14 C -0.001 4.001 15 N -0.324 5.324 16 C -0.022 4.022 17 C -0.480 4.480 18 H 0.071 0.929 19 C -0.226 4.226 20 N -0.543 5.543 21 Si 0.894 3.106 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.220 1.220 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.101 0.899 41 H 0.021 0.979 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.925 -3.902 1.247 18.387 hybrid contribution 0.152 -1.292 -0.706 1.480 sum -17.773 -5.193 0.541 18.524 Atomic orbital electron populations 1.21779 0.95975 1.01546 1.01713 1.21504 0.95513 0.96622 1.02378 1.21229 0.92107 0.97230 1.02045 1.22444 0.94406 0.95797 1.01321 0.86560 1.23089 1.03065 1.02191 0.90241 1.22332 0.98076 0.98306 1.02090 0.86170 1.19625 0.84534 0.83160 0.80195 1.90657 1.69026 1.33676 1.49124 1.47883 1.23978 1.08199 1.53590 1.21802 1.00051 0.87150 0.97516 1.22343 0.82116 1.02205 0.95727 1.21226 0.83974 0.99879 0.94995 1.43813 1.20032 1.05190 1.63340 1.21089 0.96155 0.88867 0.96117 1.19960 1.32011 0.95012 1.01051 0.92863 1.25876 0.99178 1.05247 0.92342 1.70709 1.47206 1.18821 1.17612 0.83556 0.76690 0.75605 0.74746 1.21709 1.21589 1.22030 0.92819 0.92792 0.92814 0.91802 0.91800 0.91715 0.91526 0.88286 0.87981 0.93077 0.91329 0.90159 0.90681 0.91441 0.95324 0.89890 0.97884 0.95066 0.94856 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.01 5.89 -26.73 -0.16 -1.17 16 3 C -0.09 -0.79 5.50 -26.73 -0.15 -0.94 16 4 C -0.12 -1.41 5.25 -90.58 -0.48 -1.89 16 5 H 0.12 1.58 7.60 -51.93 -0.39 1.19 16 6 C -0.15 -1.70 9.88 -26.69 -0.26 -1.97 16 7 C -0.19 -2.43 4.51 -91.77 -0.41 -2.84 16 8 H 0.12 1.30 7.27 -51.93 -0.38 0.92 16 9 C 0.54 9.54 7.46 -10.98 -0.08 9.46 16 10 O -0.55 -11.69 15.84 5.56 0.09 -11.60 16 11 N -0.60 -10.82 2.87 -181.57 -0.52 -11.34 16 12 C 0.08 1.11 10.01 59.85 0.60 1.71 16 13 C 0.10 2.12 5.73 -4.05 -0.02 2.10 16 14 C 0.13 3.09 5.15 -4.05 -0.02 3.07 16 15 N -0.60 -15.80 2.66 -181.12 -0.48 -16.28 16 16 C 0.12 2.87 10.69 59.85 0.64 3.51 16 17 C -0.35 -9.91 9.42 -15.06 -0.14 -10.05 16 18 H 0.05 1.53 7.97 -52.49 -0.42 1.11 16 19 C -0.02 -0.66 4.82 -17.43 -0.08 -0.75 16 20 N -0.90 -26.71 12.16 55.49 0.67 -26.04 16 21 Si 1.06 24.84 30.00 -169.99 -5.10 19.74 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.10 0.92 8.03 -51.93 -0.42 0.51 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.81 6.64 -51.92 -0.34 0.46 16 36 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 37 H 0.07 1.61 8.07 -51.93 -0.42 1.19 16 38 H 0.07 1.51 7.42 -51.93 -0.39 1.12 16 39 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.08 2.21 5.28 -51.93 -0.27 1.93 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.03 0.67 8.04 -51.93 -0.42 0.26 16 43 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 44 H 0.27 8.19 7.18 -40.82 -0.29 7.89 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -32.09 357.96 -8.16 -40.25 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.01 Total: 0.33 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.20 Total: -0.44 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.33 Total: -53.66 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.09 -8.16 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268249371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.803 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds