Wall clock time and date at job start Mon Mar 30 2020 00:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47135 * 2 1 4 4 C 1.53003 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.09002 * 115.56028 * 29.31469 * 4 3 2 6 6 C 1.53075 * 117.49527 * 243.60252 * 4 3 2 7 7 C 1.52998 * 59.98443 * 252.51635 * 6 4 3 8 8 H 1.08997 * 117.50499 * 107.50157 * 7 6 4 9 9 C 1.50706 * 117.49455 * 252.50041 * 7 6 4 10 10 O 1.21276 * 120.00008 * 68.74781 * 9 7 6 11 11 N 1.34774 * 119.99756 * 248.74286 * 9 7 6 12 12 C 1.46500 * 120.00484 * 0.02562 * 11 9 7 13 13 C 1.46500 * 119.99882 * 180.02562 * 11 9 7 14 14 C 1.52991 * 109.47207 * 270.00312 * 13 11 9 15 15 N 1.46500 * 109.47207 * 179.97438 * 14 13 11 16 16 C 1.46504 * 120.00165 * 269.99909 * 15 14 13 17 17 C 1.36941 * 120.00049 * 89.99965 * 15 14 13 18 18 H 1.07999 * 120.00269 * 213.51551 * 17 15 14 19 19 C 1.38809 * 120.00008 * 33.51724 * 17 15 14 20 20 N 1.31621 * 120.00086 * 27.80019 * 19 17 15 21 21 Si 1.86799 * 119.99953 * 207.79687 * 19 17 15 22 22 H 1.48501 * 109.47249 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47275 * 120.00050 * 21 19 17 24 24 H 1.48505 * 109.47119 * 239.99990 * 21 19 17 25 25 H 1.08993 * 109.47135 * 299.99817 * 1 2 3 26 26 H 1.08996 * 109.47216 * 59.99674 * 1 2 3 27 27 H 1.08995 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47013 * 240.00469 * 2 1 3 29 29 H 1.08996 * 109.47216 * 120.00326 * 2 1 3 30 30 H 1.09004 * 109.47424 * 59.99943 * 3 2 1 31 31 H 1.08998 * 109.47831 * 300.00126 * 3 2 1 32 32 H 1.08999 * 117.51218 * 145.03436 * 6 4 3 33 33 H 1.09000 * 117.51265 * 359.97438 * 6 4 3 34 34 H 1.09001 * 109.47326 * 270.00543 * 12 11 9 35 35 H 1.09007 * 109.46788 * 29.99497 * 12 11 9 36 36 H 1.08994 * 109.47625 * 149.99309 * 12 11 9 37 37 H 1.09007 * 109.47147 * 150.00096 * 13 11 9 38 38 H 1.09000 * 109.47326 * 30.00482 * 13 11 9 39 39 H 1.09000 * 109.47665 * 60.00363 * 14 13 11 40 40 H 1.08998 * 109.47437 * 299.99591 * 14 13 11 41 41 H 1.09001 * 109.47420 * 266.13520 * 16 15 14 42 42 H 1.08999 * 109.46477 * 26.13748 * 16 15 14 43 43 H 1.09000 * 109.46919 * 146.13011 * 16 15 14 44 44 H 0.97002 * 119.99898 * 5.70258 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0406 0.5849 -0.4805 6 6 4.2762 2.0463 1.2171 7 6 4.2765 2.7944 -0.1175 8 1 3.6514 3.6838 -0.1961 9 6 5.5697 2.8385 -0.8901 10 8 6.0116 1.8264 -1.3911 11 7 6.2351 4.0029 -1.0242 12 6 5.7016 5.2255 -0.4186 13 6 7.4919 4.0459 -1.7757 14 6 8.6627 3.7813 -0.8271 15 7 9.9195 3.8237 -1.5787 16 6 10.4526 2.6007 -2.1841 17 6 10.5959 5.0065 -1.7155 18 1 11.1502 5.2102 -2.6197 19 6 10.5692 5.9436 -0.6918 20 7 10.4026 5.5529 0.5540 21 14 10.7698 7.7593 -1.0823 22 1 10.9402 7.9347 -2.5471 23 1 9.5629 8.4986 -0.6329 24 1 11.9652 8.2881 -0.3775 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.2113 1.5861 1.5363 33 1 3.6508 2.4438 2.0165 34 1 5.0468 5.7279 -1.1306 35 1 5.1359 4.9701 0.4775 36 1 6.5249 5.8881 -0.1519 37 1 7.6090 5.0290 -2.2320 38 1 7.4759 3.2836 -2.5546 39 1 8.5457 2.7982 -0.3709 40 1 8.6789 4.5437 -0.0483 41 1 11.1602 2.1345 -1.4985 42 1 9.6346 1.9097 -2.3876 43 1 10.9597 2.8482 -3.1167 44 1 10.3814 4.6068 0.7668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268249371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:10 Heat of formation + Delta-G solvation = -23.140648 kcal Electronic energy + Delta-G solvation = -20933.683551 eV Core-core repulsion = 17886.383601 eV Total energy + Delta-G solvation = -3047.299950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25251 -38.65382 -37.80718 -36.40947 -34.74190 -33.36574 -30.97738 -28.41024 -27.68174 -27.40255 -26.13549 -23.95581 -22.83304 -22.28889 -21.41864 -19.89378 -19.42165 -18.25325 -17.26497 -16.70801 -16.20977 -16.03967 -15.83963 -15.54166 -15.36141 -15.16759 -14.53940 -14.18715 -14.00439 -13.92426 -13.69284 -13.28740 -13.20126 -13.11123 -13.01190 -12.85568 -12.76705 -12.59806 -12.20956 -11.94489 -11.90621 -11.87029 -11.66700 -11.47538 -11.18868 -10.96098 -10.77631 -10.51801 -9.82629 -8.94348 -8.25005 -5.56202 1.43992 1.59454 1.65673 1.84556 1.95355 2.63804 2.84423 3.14082 3.41033 3.61467 3.72348 3.82799 4.01240 4.17111 4.20008 4.29199 4.30731 4.36019 4.38792 4.54497 4.62085 4.63951 4.65720 4.78134 4.81612 4.85400 4.87292 4.88243 4.90424 4.94629 4.99634 5.07061 5.21013 5.23380 5.37070 5.41371 5.50373 5.53098 5.83570 6.30057 6.42115 6.98013 7.13882 7.68581 8.12740 8.87594 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032139 B = 0.003809 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.995403 B = 7349.793329 C = 7794.266580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.117 4.117 5 H 0.088 0.912 6 C -0.138 4.138 7 C -0.191 4.191 8 H 0.154 0.846 9 C 0.528 3.472 10 O -0.594 6.594 11 N -0.609 5.609 12 C 0.075 3.925 13 C 0.118 3.882 14 C 0.140 3.860 15 N -0.619 5.619 16 C 0.125 3.875 17 C -0.365 4.365 18 H 0.046 0.954 19 C -0.066 4.066 20 N -0.921 5.921 21 Si 1.117 2.883 22 H -0.276 1.276 23 H -0.276 1.276 24 H -0.291 1.291 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.012 0.988 40 H 0.063 0.937 41 H -0.001 1.001 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.536 -3.424 1.284 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.118 4.118 4 C -0.136 4.136 5 H 0.106 0.894 6 C -0.175 4.175 7 C -0.212 4.212 8 H 0.171 0.829 9 C 0.318 3.682 10 O -0.475 6.475 11 N -0.340 5.340 12 C -0.067 4.067 13 C -0.007 4.007 14 C 0.012 3.988 15 N -0.343 5.343 16 C -0.020 4.020 17 C -0.494 4.494 18 H 0.064 0.936 19 C -0.264 4.264 20 N -0.561 5.561 21 Si 0.940 3.060 22 H -0.201 1.201 23 H -0.201 1.201 24 H -0.218 1.218 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.081 0.919 41 H 0.017 0.983 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.277 -2.425 1.644 20.488 hybrid contribution 0.917 -1.860 -0.827 2.233 sum -19.360 -4.285 0.817 19.845 Atomic orbital electron populations 1.21756 0.94722 1.02014 1.02250 1.21507 0.96572 0.96261 1.01838 1.21226 0.89595 0.97782 1.03214 1.22467 0.96155 0.94011 1.00946 0.89390 1.23202 1.02634 1.01170 0.90526 1.22361 0.95972 1.00381 1.02483 0.82884 1.20527 0.85790 0.82148 0.79701 1.90629 1.70571 1.35236 1.51062 1.47967 1.22811 1.09899 1.53363 1.22029 0.99917 0.85359 0.99363 1.21808 0.82908 1.01297 0.94728 1.21065 0.84738 0.98056 0.94910 1.44081 1.20975 1.05671 1.63620 1.21118 0.96474 0.88240 0.96192 1.20131 1.32452 0.95999 1.00822 0.93594 1.27323 0.98302 1.09135 0.91658 1.70853 1.49158 1.17463 1.18592 0.82867 0.77084 0.70619 0.75431 1.20093 1.20144 1.21762 0.91905 0.92592 0.92476 0.92998 0.91854 0.89638 0.91119 0.90478 0.84421 0.90133 0.88428 0.92111 0.90895 0.92951 0.96983 0.91898 0.98263 0.93997 0.93850 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.83 5.89 30.59 0.18 -1.65 16 3 C -0.08 -1.22 5.50 30.59 0.17 -1.05 16 4 C -0.12 -2.56 5.25 -10.77 -0.06 -2.62 16 5 H 0.09 2.45 7.60 -2.39 -0.02 2.44 16 6 C -0.14 -2.87 9.88 30.62 0.30 -2.57 16 7 C -0.19 -4.57 4.51 -11.54 -0.05 -4.62 16 8 H 0.15 2.65 7.27 -2.39 -0.02 2.64 16 9 C 0.53 18.68 7.46 87.66 0.65 19.33 16 10 O -0.59 -26.22 15.84 -3.02 -0.05 -26.26 16 11 N -0.61 -21.56 2.87 -846.76 -2.43 -23.99 16 12 C 0.08 1.97 10.01 127.77 1.28 3.25 16 13 C 0.12 5.10 5.73 86.38 0.49 5.59 16 14 C 0.14 7.02 5.15 86.38 0.44 7.47 16 15 N -0.62 -33.33 2.66 -726.94 -1.93 -35.26 16 16 C 0.12 5.93 10.69 127.77 1.37 7.29 16 17 C -0.36 -20.81 9.42 84.03 0.79 -20.02 16 18 H 0.05 2.65 7.97 -2.91 -0.02 2.63 16 19 C -0.07 -3.73 4.82 84.86 0.41 -3.32 16 20 N -0.92 -55.10 12.16 21.65 0.26 -54.83 16 21 Si 1.12 49.45 30.00 68.60 2.06 51.51 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.98 7.88 -2.38 -0.02 0.96 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.14 1.91 8.03 -2.39 -0.02 1.89 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.98 6.64 -2.38 -0.02 1.97 16 36 H 0.06 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.07 3.16 8.07 -2.38 -0.02 3.14 16 38 H 0.05 2.40 7.42 -2.39 -0.02 2.39 16 39 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 40 H 0.06 3.45 5.28 -2.39 -0.01 3.44 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 43 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.25 15.71 7.18 -92.71 -0.67 15.04 16 Total: -1.00 -71.24 357.96 5.64 -65.60 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 1.04 Total: 17.20 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 6.70 Total: 6.05 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -4.10 Total: -114.09 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.06 Total: 51.51 kcal Total: -71.24 5.64 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268249371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.455 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds