Wall clock time and date at job start Mon Mar 30 2020 00:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.56470 * 29.29581 * 4 3 2 6 6 C 1.53006 * 117.49629 * 243.60176 * 4 3 2 7 7 C 1.52997 * 59.99924 * 252.51523 * 6 4 3 8 8 H 1.09002 * 117.49884 * 107.49654 * 7 6 4 9 9 C 1.50702 * 117.49669 * 252.51146 * 7 6 4 10 10 O 1.21280 * 120.00321 * 68.62265 * 9 7 6 11 11 N 1.34783 * 120.00171 * 248.62535 * 9 7 6 12 12 C 1.46506 * 119.99603 * 359.97438 * 11 9 7 13 13 C 1.46495 * 120.00138 * 179.97438 * 11 9 7 14 14 C 1.53002 * 109.47254 * 90.00077 * 13 11 9 15 15 C 1.52992 * 109.47329 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47422 * 180.02562 * 15 14 13 17 17 C 1.36932 * 120.00295 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00393 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99379 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00478 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46860 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47223 * 119.99643 * 21 19 17 24 24 H 1.48501 * 109.47044 * 240.00025 * 21 19 17 25 25 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47183 * 300.00838 * 1 2 3 27 27 H 1.09007 * 109.46678 * 60.00727 * 1 2 3 28 28 H 1.08995 * 109.47183 * 239.99162 * 2 1 3 29 29 H 1.09007 * 109.46678 * 119.99273 * 2 1 3 30 30 H 1.09004 * 109.47179 * 59.99266 * 3 2 1 31 31 H 1.09007 * 109.46703 * 299.99258 * 3 2 1 32 32 H 1.08999 * 117.49661 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.49552 * 144.99844 * 6 4 3 34 34 H 1.08998 * 109.47105 * 90.00458 * 12 11 9 35 35 H 1.09004 * 109.46734 * 209.99888 * 12 11 9 36 36 H 1.09000 * 109.47107 * 329.99834 * 12 11 9 37 37 H 1.09004 * 109.47095 * 210.00127 * 13 11 9 38 38 H 1.08998 * 109.47410 * 330.00099 * 13 11 9 39 39 H 1.09004 * 109.47110 * 300.00041 * 14 13 11 40 40 H 1.08998 * 109.46894 * 59.99706 * 14 13 11 41 41 H 1.09004 * 109.46964 * 300.00015 * 15 14 13 42 42 H 1.08997 * 109.47472 * 59.99385 * 15 14 13 43 43 H 0.97001 * 119.99988 * 359.97438 * 16 15 14 44 44 H 0.97001 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0405 0.5849 -0.4801 6 6 4.2760 2.0460 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1964 9 6 5.5697 2.8383 -0.8905 10 8 6.0124 1.8257 -1.3899 11 7 6.2343 4.0030 -1.0265 12 6 5.6992 5.2263 -0.4236 13 6 7.4916 4.0455 -1.7770 14 6 7.1969 4.3369 -3.2498 15 6 8.5099 4.3808 -4.0338 16 7 8.2278 4.6604 -5.4439 17 6 9.2561 4.7465 -6.3440 18 1 10.2753 4.6088 -6.0142 19 6 8.9887 5.0110 -7.6802 20 7 7.7466 5.1784 -8.0820 21 14 10.3916 5.1292 -8.9079 22 1 11.6820 4.9044 -8.2081 23 1 10.2141 4.0995 -9.9630 24 1 10.3940 6.4784 -9.5283 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 3.6503 2.4427 2.0161 33 1 5.2107 1.5851 1.5359 34 1 6.0884 5.3327 0.5889 35 1 5.9999 6.0872 -1.0208 36 1 4.6112 5.1693 -0.3906 37 1 8.1301 4.8307 -1.3720 38 1 7.9987 3.0845 -1.6913 39 1 6.5583 3.5518 -3.6548 40 1 6.6898 5.2979 -3.3356 41 1 9.1488 5.1657 -3.6289 42 1 9.0167 3.4196 -3.9479 43 1 7.3124 4.7838 -5.7401 44 1 7.5596 5.3628 -9.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268840478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:45 Heat of formation + Delta-G solvation = -19.968063 kcal Electronic energy + Delta-G solvation = -20023.484657 eV Core-core repulsion = 16976.322280 eV Total energy + Delta-G solvation = -3047.162376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23024 -37.64482 -35.99416 -34.77246 -34.11126 -32.19051 -29.86795 -27.81995 -26.90669 -25.78075 -23.77124 -22.40542 -21.99435 -20.90635 -20.67626 -18.92883 -17.36437 -17.00457 -16.21014 -15.48536 -15.44095 -14.82646 -14.62167 -14.31260 -14.08108 -13.56276 -13.27847 -13.11168 -13.08028 -12.91585 -12.60067 -12.44361 -12.21698 -11.90607 -11.78456 -11.57492 -11.30892 -11.08073 -10.89400 -10.83556 -10.70454 -10.45051 -10.36855 -10.17362 -10.01528 -9.73619 -9.64249 -8.83020 -8.62198 -6.86986 -5.71810 -3.00345 2.47921 2.95426 3.46623 3.51748 3.54453 3.62894 4.23082 4.50240 4.53264 4.63808 4.76344 4.83303 4.88220 4.96989 5.08146 5.21226 5.24859 5.27700 5.43764 5.45410 5.49292 5.52450 5.56869 5.59425 5.61394 5.72567 5.74391 5.79023 5.95613 5.97095 5.99592 6.13354 6.15796 6.34550 6.43510 6.58631 6.91126 6.93671 7.38412 7.74725 8.21552 8.47217 9.57967 10.16923 10.51615 11.51447 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002920 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.484025 B = 9585.387711 C =10288.018382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.118 4.118 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.540 3.460 10 O -0.535 6.535 11 N -0.612 5.612 12 C 0.079 3.921 13 C 0.119 3.881 14 C -0.139 4.139 15 C 0.156 3.844 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.017 4.017 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.576 -3.998 22.927 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.137 4.137 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.211 4.211 8 H 0.141 0.859 9 C 0.328 3.672 10 O -0.412 6.412 11 N -0.345 5.345 12 C -0.064 4.064 13 C -0.004 4.004 14 C -0.178 4.178 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.148 -4.522 22.597 26.051 hybrid contribution 0.433 0.421 -0.907 1.089 sum -11.716 -4.102 21.690 24.990 Atomic orbital electron populations 1.21782 0.95884 1.01643 1.01760 1.21504 0.95638 0.96485 1.02401 1.21245 0.91890 0.97430 1.02169 1.22464 0.94694 0.95651 1.00897 0.86396 1.23073 1.03054 1.02213 0.90249 1.22352 0.97951 0.98779 1.01999 0.85875 1.19663 0.84698 0.82966 0.79892 1.90713 1.68227 1.33773 1.48496 1.47817 1.24487 1.08427 1.53771 1.21816 0.99490 0.87035 0.98105 1.21497 0.84307 1.03096 0.91475 1.22052 0.99855 1.01935 0.93908 1.20541 0.93406 0.97407 0.85820 1.42367 1.07183 1.86065 1.02163 1.19302 0.88399 1.40293 0.88835 0.91088 1.24764 0.96392 1.02942 0.97175 1.69683 1.17149 1.55930 1.15591 0.86091 0.81306 0.77191 0.81481 1.20542 1.21855 1.21892 0.92750 0.92869 0.92663 0.91665 0.91870 0.91721 0.91301 0.87948 0.88415 0.92633 0.90711 0.91095 0.90509 0.89832 0.91609 0.92029 0.96405 0.96210 0.78330 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.91 5.89 -26.73 -0.16 -1.06 16 3 C -0.09 -0.69 5.50 -26.73 -0.15 -0.84 16 4 C -0.12 -1.15 5.25 -90.62 -0.48 -1.62 16 5 H 0.12 1.40 7.60 -51.93 -0.39 1.00 16 6 C -0.15 -1.24 9.88 -26.73 -0.26 -1.50 16 7 C -0.19 -1.93 5.01 -91.77 -0.46 -2.39 16 8 H 0.12 1.01 6.44 -51.93 -0.33 0.67 16 9 C 0.54 7.66 7.46 -10.98 -0.08 7.58 16 10 O -0.54 -9.85 15.84 5.56 0.09 -9.76 16 11 N -0.61 -7.83 2.87 -181.56 -0.52 -8.35 16 12 C 0.08 0.68 10.27 59.85 0.61 1.30 16 13 C 0.12 1.72 5.41 -4.04 -0.02 1.69 16 14 C -0.14 -2.47 5.65 -26.73 -0.15 -2.62 16 15 C 0.16 3.36 6.26 -4.05 -0.03 3.33 16 16 N -0.73 -19.83 5.60 -59.91 -0.34 -20.17 16 17 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 18 H 0.07 2.02 7.83 -52.48 -0.41 1.60 16 19 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 20 N -0.93 -29.32 13.06 55.49 0.72 -28.60 16 21 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 7.87 -51.93 -0.41 0.01 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 36 H 0.07 0.50 6.00 -51.93 -0.31 0.19 16 37 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.08 1.32 7.42 -51.93 -0.39 0.94 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 10.87 7.67 -40.82 -0.31 10.56 16 44 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -34.46 361.23 -8.69 -43.16 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.02 Total: 4.66 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.05 Total: -4.47 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.13 Total: -57.11 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.46 -8.69 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268840478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.190 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds