Wall clock time and date at job start Mon Mar 30 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 C 1.52998 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.56470 * 29.29581 * 4 3 2 6 6 C 1.53006 * 117.49629 * 243.60176 * 4 3 2 7 7 C 1.52997 * 59.99924 * 252.51523 * 6 4 3 8 8 H 1.09002 * 117.49884 * 107.49654 * 7 6 4 9 9 C 1.50702 * 117.49669 * 252.51146 * 7 6 4 10 10 O 1.21280 * 120.00321 * 68.62265 * 9 7 6 11 11 N 1.34783 * 120.00171 * 248.62535 * 9 7 6 12 12 C 1.46506 * 119.99603 * 359.97438 * 11 9 7 13 13 C 1.46495 * 120.00138 * 179.97438 * 11 9 7 14 14 C 1.53002 * 109.47254 * 90.00077 * 13 11 9 15 15 C 1.52992 * 109.47329 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47422 * 180.02562 * 15 14 13 17 17 C 1.36932 * 120.00295 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00393 * 179.97438 * 17 16 15 20 20 N 1.31622 * 119.99379 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00478 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46860 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47223 * 119.99643 * 21 19 17 24 24 H 1.48501 * 109.47044 * 240.00025 * 21 19 17 25 25 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47183 * 300.00838 * 1 2 3 27 27 H 1.09007 * 109.46678 * 60.00727 * 1 2 3 28 28 H 1.08995 * 109.47183 * 239.99162 * 2 1 3 29 29 H 1.09007 * 109.46678 * 119.99273 * 2 1 3 30 30 H 1.09004 * 109.47179 * 59.99266 * 3 2 1 31 31 H 1.09007 * 109.46703 * 299.99258 * 3 2 1 32 32 H 1.08999 * 117.49661 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.49552 * 144.99844 * 6 4 3 34 34 H 1.08998 * 109.47105 * 90.00458 * 12 11 9 35 35 H 1.09004 * 109.46734 * 209.99888 * 12 11 9 36 36 H 1.09000 * 109.47107 * 329.99834 * 12 11 9 37 37 H 1.09004 * 109.47095 * 210.00127 * 13 11 9 38 38 H 1.08998 * 109.47410 * 330.00099 * 13 11 9 39 39 H 1.09004 * 109.47110 * 300.00041 * 14 13 11 40 40 H 1.08998 * 109.46894 * 59.99706 * 14 13 11 41 41 H 1.09004 * 109.46964 * 300.00015 * 15 14 13 42 42 H 1.08997 * 109.47472 * 59.99385 * 15 14 13 43 43 H 0.97001 * 119.99988 * 359.97438 * 16 15 14 44 44 H 0.97001 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 4.0405 0.5849 -0.4801 6 6 4.2760 2.0460 1.2166 7 6 4.2765 2.7944 -0.1179 8 1 3.6513 3.6839 -0.1964 9 6 5.5697 2.8383 -0.8905 10 8 6.0124 1.8257 -1.3899 11 7 6.2343 4.0030 -1.0265 12 6 5.6992 5.2263 -0.4236 13 6 7.4916 4.0455 -1.7770 14 6 7.1969 4.3369 -3.2498 15 6 8.5099 4.3808 -4.0338 16 7 8.2278 4.6604 -5.4439 17 6 9.2561 4.7465 -6.3440 18 1 10.2753 4.6088 -6.0142 19 6 8.9887 5.0110 -7.6802 20 7 7.7466 5.1784 -8.0820 21 14 10.3916 5.1292 -8.9079 22 1 11.6820 4.9044 -8.2081 23 1 10.2141 4.0995 -9.9630 24 1 10.3940 6.4784 -9.5283 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 3.6503 2.4427 2.0161 33 1 5.2107 1.5851 1.5359 34 1 6.0884 5.3327 0.5889 35 1 5.9999 6.0872 -1.0208 36 1 4.6112 5.1693 -0.3906 37 1 8.1301 4.8307 -1.3720 38 1 7.9987 3.0845 -1.6913 39 1 6.5583 3.5518 -3.6548 40 1 6.6898 5.2979 -3.3356 41 1 9.1488 5.1657 -3.6289 42 1 9.0167 3.4196 -3.9479 43 1 7.3124 4.7838 -5.7401 44 1 7.5596 5.3628 -9.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268840478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:44 Heat of formation + Delta-G solvation = -41.305525 kcal Electronic energy + Delta-G solvation = -20024.409918 eV Core-core repulsion = 16976.322280 eV Total energy + Delta-G solvation = -3048.087638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24655 -38.50791 -37.38092 -36.40507 -34.77863 -34.02671 -31.66626 -28.53137 -27.95784 -27.06236 -25.37594 -23.68090 -22.78863 -22.38733 -21.43672 -19.90756 -19.18911 -18.31411 -17.35139 -16.61647 -16.43195 -16.18410 -15.94938 -15.45014 -15.32894 -15.20164 -14.71105 -14.18785 -14.04270 -13.71199 -13.57212 -13.40611 -13.20344 -13.10280 -12.87521 -12.81237 -12.67008 -12.42650 -12.20704 -12.06033 -11.94778 -11.86950 -11.82496 -11.66301 -11.16756 -10.98965 -10.93486 -10.74909 -9.69507 -9.06364 -7.99117 -5.29609 1.44641 1.45987 1.47119 1.57392 1.98079 2.53615 2.85056 3.34288 3.45260 3.72836 3.82144 3.83765 3.97430 4.12239 4.19878 4.23479 4.29133 4.34638 4.40524 4.50009 4.57423 4.64098 4.67980 4.73858 4.82847 4.85299 4.88128 4.92911 4.96796 5.01810 5.09268 5.21691 5.24857 5.26176 5.36646 5.40960 5.45171 5.51234 5.54018 6.23004 6.38563 7.15743 7.28252 8.02712 8.26718 9.25081 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024417 B = 0.002920 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.484025 B = 9585.387711 C =10288.018382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.130 4.130 5 H 0.085 0.915 6 C -0.125 4.125 7 C -0.194 4.194 8 H 0.151 0.849 9 C 0.528 3.472 10 O -0.592 6.592 11 N -0.612 5.612 12 C 0.071 3.929 13 C 0.126 3.874 14 C -0.120 4.120 15 C 0.155 3.845 16 N -0.750 5.750 17 C -0.249 4.249 18 H 0.078 0.922 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.289 1.289 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.013 0.987 43 H 0.372 0.628 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -2.646 24.979 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.120 4.120 4 C -0.149 4.149 5 H 0.103 0.897 6 C -0.162 4.162 7 C -0.214 4.214 8 H 0.168 0.832 9 C 0.318 3.682 10 O -0.473 6.473 11 N -0.343 5.343 12 C -0.070 4.070 13 C 0.003 3.997 14 C -0.159 4.159 15 C 0.028 3.972 16 N -0.392 5.392 17 C -0.381 4.381 18 H 0.096 0.904 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.215 1.215 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.203 0.797 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.406 -3.142 24.709 27.826 hybrid contribution 0.526 -0.022 -1.495 1.585 sum -11.879 -3.165 23.214 26.268 Atomic orbital electron populations 1.21766 0.94917 1.01988 1.02185 1.21507 0.96452 0.96419 1.01805 1.21217 0.90156 0.97605 1.02976 1.22448 0.95961 0.94433 1.02058 0.89658 1.23176 1.02681 1.00330 0.90022 1.22389 0.96185 0.99999 1.02859 0.83160 1.20470 0.85754 0.82503 0.79518 1.90684 1.69857 1.35806 1.50939 1.47944 1.23722 1.09629 1.52981 1.22128 1.00799 0.85022 0.99054 1.21311 0.85703 1.03094 0.89641 1.21850 0.97354 1.01106 0.95632 1.20701 0.95525 0.97247 0.83723 1.42622 1.06248 1.86193 1.04178 1.19725 0.89214 1.39485 0.89649 0.90415 1.25689 0.99064 1.03217 0.99194 1.69846 1.19346 1.57271 1.15813 0.84976 0.78685 0.76890 0.78614 1.18862 1.21995 1.21539 0.92522 0.91670 0.92957 0.93398 0.91457 0.89387 0.91851 0.84471 0.89502 0.90256 0.90246 0.89139 0.87411 0.91773 0.94743 0.91307 0.94648 0.96931 0.79673 0.93878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.76 5.89 30.60 0.18 -1.58 16 3 C -0.08 -1.14 5.50 30.59 0.17 -0.97 16 4 C -0.13 -2.45 5.25 -10.79 -0.06 -2.51 16 5 H 0.09 2.18 7.60 -2.39 -0.02 2.16 16 6 C -0.12 -1.80 9.88 30.60 0.30 -1.49 16 7 C -0.19 -3.63 5.01 -11.54 -0.06 -3.69 16 8 H 0.15 1.96 6.44 -2.39 -0.02 1.94 16 9 C 0.53 14.96 7.46 87.66 0.65 15.62 16 10 O -0.59 -22.94 15.84 -3.03 -0.05 -22.98 16 11 N -0.61 -14.89 2.87 -846.73 -2.43 -17.33 16 12 C 0.07 1.01 10.27 127.77 1.31 2.33 16 13 C 0.13 3.56 5.41 86.38 0.47 4.03 16 14 C -0.12 -4.32 5.65 30.59 0.17 -4.14 16 15 C 0.15 6.68 6.26 86.38 0.54 7.22 16 16 N -0.75 -41.16 5.60 -343.47 -1.92 -43.08 16 17 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 18 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 19 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 20 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 21 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 30 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.14 1.06 8.03 -2.39 -0.02 1.04 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.09 8.07 -2.39 -0.02 1.07 16 36 H 0.09 0.95 6.00 -2.39 -0.01 0.93 16 37 H 0.11 2.38 8.07 -2.38 -0.02 2.36 16 38 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 39 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.37 21.70 7.67 -92.71 -0.71 20.99 16 44 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -76.82 361.23 3.85 -72.97 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.24 Total: 26.82 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.70 Total: -4.40 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.07 Total: -122.04 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.98 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -76.82 3.85 -72.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268840478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.669 kcal (2) G-P(sol) polarization free energy of solvation -76.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds