Wall clock time and date at job start Mon Mar 30 2020 00:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46924 * 2 1 4 4 C 1.53001 * 109.47279 * 119.99901 * 2 1 3 5 5 C 1.50699 * 109.46982 * 65.00131 * 4 2 1 6 6 O 1.21286 * 120.00153 * 359.97438 * 5 4 2 7 7 N 1.34778 * 120.00124 * 180.02562 * 5 4 2 8 8 C 1.46495 * 120.00396 * 185.12567 * 7 5 4 9 9 C 1.53007 * 109.46953 * 298.23602 * 8 7 5 10 10 C 1.52998 * 109.47402 * 58.23535 * 8 7 5 11 11 N 1.46498 * 109.47057 * 59.99843 * 10 8 7 12 12 C 1.36938 * 120.00020 * 180.02562 * 11 10 8 13 13 H 1.08003 * 120.00208 * 359.97438 * 12 11 10 14 14 C 1.38811 * 119.99960 * 180.02562 * 12 11 10 15 15 N 1.31620 * 120.00283 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99969 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47303 * 89.99848 * 16 14 12 18 18 H 1.48504 * 109.46714 * 209.99643 * 16 14 12 19 19 H 1.48493 * 109.47063 * 329.99530 * 16 14 12 20 20 C 1.52995 * 109.47429 * 178.23764 * 8 7 5 21 21 C 1.52998 * 117.50196 * 132.09148 * 20 8 7 22 22 C 1.52996 * 117.50062 * 63.42979 * 20 8 7 23 23 H 1.08994 * 109.46955 * 299.99698 * 1 2 3 24 24 H 1.08998 * 109.46800 * 60.00125 * 1 2 3 25 25 H 1.08999 * 109.46464 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47571 * 240.00083 * 2 1 3 27 27 H 1.09003 * 109.47080 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47279 * 299.99581 * 3 2 1 29 29 H 1.09003 * 109.47013 * 60.00218 * 3 2 1 30 30 H 1.09002 * 109.46663 * 305.00292 * 4 2 1 31 31 H 1.08994 * 109.47239 * 185.00284 * 4 2 1 32 32 H 0.97004 * 119.99891 * 5.12198 * 7 5 4 33 33 H 1.09001 * 109.46988 * 299.99966 * 9 8 7 34 34 H 1.08995 * 109.46896 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47149 * 60.00089 * 9 8 7 36 36 H 1.08997 * 109.47620 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47035 * 300.00599 * 10 8 7 38 38 H 0.97002 * 120.00056 * 0.02562 * 11 10 8 39 39 H 0.97000 * 120.00377 * 180.02562 * 15 14 12 40 40 H 1.09001 * 115.54848 * 277.75984 * 20 8 7 41 41 H 1.09005 * 117.49922 * 0.02562 * 21 20 8 42 42 H 1.09000 * 117.50080 * 145.02015 * 21 20 8 43 43 H 1.09001 * 117.50213 * 214.97909 * 22 20 8 44 44 H 1.09003 * 117.50019 * 0.02562 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 -2.1733 1.1889 6 8 1.0110 -2.5902 0.2403 7 7 1.9846 -3.0085 2.1895 8 6 1.6963 -4.4406 2.0797 9 6 0.1844 -4.6496 1.9711 10 6 2.3799 -5.0044 0.8325 11 7 3.8274 -4.8042 0.9364 12 6 4.6516 -5.2310 -0.0704 13 1 4.2346 -5.7156 -0.9410 14 6 6.0232 -5.0419 0.0283 15 7 6.8156 -5.4525 -0.9392 16 14 6.7447 -4.2057 1.5349 17 1 7.0621 -5.2281 2.5641 18 1 7.9859 -3.4848 1.1541 19 1 5.7598 -3.2396 2.0841 20 6 2.2231 -5.1636 3.3209 21 6 1.2808 -6.1457 4.0197 22 6 1.6005 -4.7971 4.6695 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8935 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -0.2617 2.1369 31 1 3.1263 -0.6443 1.2952 32 1 2.4225 -2.6613 2.9824 33 1 -0.3026 -4.2479 2.8597 34 1 -0.0301 -5.7150 1.8890 35 1 -0.1910 -4.1345 1.0869 36 1 2.1650 -6.0698 0.7505 37 1 2.0045 -4.4893 -0.0518 38 1 4.2020 -4.3694 1.7184 39 1 7.7741 -5.3207 -0.8700 40 1 3.2852 -5.4086 3.3068 41 1 0.2856 -6.2771 3.5950 42 1 1.7229 -7.0366 4.4657 43 1 2.2528 -4.8014 5.5428 44 1 0.8152 -4.0412 4.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269596426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:27 Heat of formation + Delta-G solvation = -31.856648 kcal Electronic energy + Delta-G solvation = -22020.377139 eV Core-core repulsion = 18972.699234 eV Total energy + Delta-G solvation = -3047.677904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44767 -39.29115 -36.66925 -36.28971 -34.94055 -33.38716 -31.67119 -28.74455 -27.92248 -27.78562 -25.04886 -23.88785 -23.15294 -21.92992 -20.65431 -20.26436 -19.62822 -18.31218 -16.96596 -16.74730 -16.56999 -16.34781 -15.74954 -15.45827 -14.98514 -14.81044 -14.57373 -14.51057 -13.90168 -13.84316 -13.54653 -13.23715 -13.08825 -12.97397 -12.87106 -12.71885 -12.35823 -12.27420 -12.08255 -11.99216 -11.94761 -11.84044 -11.70366 -11.55550 -11.23550 -11.10067 -10.95662 -10.35458 -9.88480 -9.27284 -8.04371 -5.37211 1.30678 1.37639 1.45049 1.82232 2.25619 2.45674 3.02697 3.26060 3.54660 3.72264 3.79473 3.87628 3.98264 4.06341 4.14501 4.18126 4.37107 4.44184 4.61714 4.70304 4.73547 4.77170 4.79103 4.84553 4.86542 4.89615 4.97246 5.03231 5.05247 5.09956 5.15496 5.27455 5.31881 5.32460 5.43520 5.48537 5.55969 5.70600 5.76133 6.18619 6.75921 7.05784 7.47500 7.80204 8.04905 9.17942 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.008070 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.445662 B = 3468.899280 C = 4868.219068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.133 4.133 5 C 0.510 3.490 6 O -0.566 6.566 7 N -0.713 5.713 8 C 0.209 3.791 9 C -0.152 4.152 10 C 0.149 3.851 11 N -0.742 5.742 12 C -0.234 4.234 13 H 0.043 0.957 14 C -0.067 4.067 15 N -0.987 5.987 16 Si 0.960 3.040 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.246 1.246 20 C -0.183 4.183 21 C -0.167 4.167 22 C -0.151 4.151 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.367 0.633 39 H 0.258 0.742 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 10.989 14.962 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.173 4.173 5 C 0.298 3.702 6 O -0.445 6.445 7 N -0.365 5.365 8 C 0.123 3.877 9 C -0.210 4.210 10 C 0.021 3.979 11 N -0.388 5.388 12 C -0.365 4.365 13 H 0.061 0.939 14 C -0.258 4.258 15 N -0.637 5.637 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.222 1.222 19 H -0.171 1.171 20 C -0.202 4.202 21 C -0.204 4.204 22 C -0.188 4.188 23 H 0.085 0.915 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.112 0.888 32 H 0.244 0.756 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.201 0.799 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.513 10.594 14.080 22.827 hybrid contribution 1.351 -0.001 0.163 1.361 sum -13.162 10.593 14.242 22.097 Atomic orbital electron populations 1.21857 0.94499 1.01964 1.01780 1.20840 0.96784 0.96374 0.96293 1.21804 1.00915 0.94258 1.02810 1.21818 1.03216 0.90506 1.01733 1.21152 0.78143 0.89376 0.81535 1.90597 1.40925 1.78568 1.34397 1.46005 1.62085 1.06960 1.21412 1.19802 0.95043 0.80064 0.92777 1.22186 0.93256 1.02526 1.03079 1.21062 0.82918 0.96947 0.96940 1.42430 1.02442 1.72423 1.21516 1.18998 0.89032 1.30274 0.98230 0.93873 1.25564 0.96100 1.02551 1.01547 1.69910 1.03683 1.54520 1.35616 0.85342 0.77833 0.78989 0.79249 1.20082 1.22160 1.17062 1.22326 0.98973 1.06063 0.92791 1.23196 1.00439 0.94060 1.02683 1.23060 1.03038 0.98626 0.94096 0.91490 0.92909 0.93210 0.93999 0.92804 0.92235 0.90755 0.85897 0.88836 0.75560 0.90284 0.90989 0.92404 0.96159 0.96038 0.79866 0.93339 0.89157 0.87182 0.88222 0.87381 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.93 71.98 0.64 -2.69 16 2 C -0.08 -2.06 2.57 -10.79 -0.03 -2.09 16 3 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 4 C -0.13 -3.08 5.18 29.85 0.15 -2.92 16 5 C 0.51 15.66 6.95 87.66 0.61 16.27 16 6 O -0.57 -21.74 10.20 -3.05 -0.03 -21.77 16 7 N -0.71 -19.58 4.73 -422.93 -2.00 -21.58 16 8 C 0.21 6.35 0.54 3.60 0.00 6.35 16 9 C -0.15 -4.04 7.06 71.98 0.51 -3.53 16 10 C 0.15 6.37 4.94 86.38 0.43 6.80 16 11 N -0.74 -36.31 4.84 -343.46 -1.66 -37.97 16 12 C -0.23 -14.20 10.47 84.03 0.88 -13.32 16 13 H 0.04 2.94 8.06 -2.91 -0.02 2.91 16 14 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 15 N -0.99 -65.38 13.97 21.65 0.30 -65.08 16 16 Si 0.96 45.74 27.74 68.60 1.90 47.64 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 19 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 20 C -0.18 -4.76 4.86 -10.80 -0.05 -4.81 16 21 C -0.17 -3.38 9.63 30.62 0.29 -3.09 16 22 C -0.15 -2.64 9.72 30.62 0.30 -2.35 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.05 1.43 5.95 -2.39 -0.01 1.42 16 26 H 0.04 1.34 7.96 -2.39 -0.02 1.32 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.41 8.79 8.38 -92.71 -0.78 8.01 16 33 H 0.08 1.66 7.00 -2.39 -0.02 1.65 16 34 H 0.07 1.78 6.81 -2.39 -0.02 1.77 16 35 H 0.06 1.84 6.13 -2.39 -0.01 1.83 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.02 1.07 6.22 -2.39 -0.01 1.05 16 38 H 0.37 16.55 4.49 -92.71 -0.42 16.14 16 39 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 40 H 0.09 2.84 7.09 -2.39 -0.02 2.83 16 41 H 0.11 2.05 5.88 -2.38 -0.01 2.03 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.11 1.61 7.39 -2.39 -0.02 1.59 16 Total: -1.00 -76.06 338.83 3.11 -72.94 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.26 Total: 36.73 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 4.86 Total: -10.92 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -3.36 Total: -124.62 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.03 Total: -21.77 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Total: -76.06 3.11 -72.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269596426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.087 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds