Wall clock time and date at job start Mon Mar 30 2020 00:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47040 * 2 1 4 4 C 1.52999 * 109.46693 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47645 * 55.00239 * 4 3 2 6 6 C 1.52999 * 109.47359 * 294.99843 * 4 3 2 7 7 C 1.50704 * 109.46955 * 174.99829 * 4 3 2 8 8 O 1.21284 * 119.99946 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99832 * 179.97438 * 7 4 3 10 10 C 1.46500 * 119.99716 * 179.97438 * 9 7 4 11 11 C 1.53009 * 110.91541 * 56.10117 * 10 9 7 12 12 C 1.55160 * 111.00443 * 180.02562 * 10 9 7 13 13 C 1.54316 * 102.94268 * 82.57531 * 12 10 9 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 10 15 15 C 1.36933 * 125.65326 * 180.79632 * 14 13 12 16 16 H 1.08001 * 120.00302 * 180.02562 * 15 14 13 17 17 C 1.38819 * 119.99866 * 0.02562 * 15 14 13 18 18 N 1.31626 * 119.99573 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47402 * 90.00064 * 19 17 15 21 21 H 1.48498 * 109.46929 * 209.99599 * 19 17 15 22 22 H 1.48496 * 109.47115 * 329.99904 * 19 17 15 23 23 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 24 24 H 1.09003 * 109.46861 * 300.00467 * 1 2 3 25 25 H 1.09003 * 109.46976 * 59.99948 * 1 2 3 26 26 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47098 * 240.00015 * 2 1 3 28 28 H 1.09003 * 109.46976 * 120.00052 * 2 1 3 29 29 H 1.09001 * 109.47162 * 60.00055 * 3 2 1 30 30 H 1.08995 * 109.47457 * 299.99612 * 3 2 1 31 31 H 1.09006 * 109.46812 * 300.00290 * 6 4 3 32 32 H 1.09001 * 109.47103 * 60.00007 * 6 4 3 33 33 H 1.09004 * 109.47484 * 180.02562 * 6 4 3 34 34 H 0.96993 * 120.00179 * 0.02562 * 9 7 4 35 35 H 1.08997 * 109.47161 * 183.89854 * 11 10 9 36 36 H 1.08991 * 109.46994 * 303.89949 * 11 10 9 37 37 H 1.08999 * 109.47006 * 63.90137 * 11 10 9 38 38 H 1.08997 * 110.71793 * 324.20861 * 12 10 9 39 39 H 1.09002 * 110.71871 * 200.94207 * 12 10 9 40 40 H 1.09004 * 109.88447 * 262.78098 * 13 12 10 41 41 H 1.09000 * 109.88516 * 141.60887 * 13 12 10 42 42 H 0.97000 * 119.99477 * 180.02562 * 18 17 15 43 43 H 1.09001 * 110.36478 * 94.71036 * 23 14 13 44 44 H 1.08998 * 110.36859 * 217.03414 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8529 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0724 2.8578 -0.1232 8 8 3.2844 3.7762 -0.2036 9 7 5.3976 3.1031 -0.1437 10 6 5.8860 4.4790 -0.2647 11 6 5.3154 5.3610 0.8479 12 6 7.4370 4.5204 -0.2675 13 6 7.7884 4.2051 -1.7367 14 7 6.6085 4.5370 -2.5487 15 6 6.5057 4.3867 -3.9059 16 1 5.5919 4.6612 -4.4119 17 6 7.5759 3.8813 -4.6313 18 7 8.6894 3.5462 -4.0144 19 14 7.4360 3.6769 -6.4827 20 1 7.8897 4.9214 -7.1539 21 1 8.2854 2.5404 -6.9208 22 1 6.0216 3.4064 -6.8453 23 6 5.5567 5.0644 -1.6606 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.7158 1.4226 2.1499 32 1 3.7161 -0.1907 1.3979 33 1 5.1695 0.8333 1.3090 34 1 6.0278 2.3687 -0.0790 35 1 5.6373 6.3912 0.6960 36 1 4.2268 5.3136 0.8268 37 1 5.6759 5.0064 1.8135 38 1 7.8442 3.7595 0.3983 39 1 7.7969 5.5108 0.0112 40 1 8.0251 3.1464 -1.8423 41 1 8.6380 4.8104 -2.0527 42 1 9.4373 3.1935 -4.5214 43 1 5.5938 6.1535 -1.6336 44 1 4.5752 4.7256 -1.9920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270558133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:43 Heat of formation + Delta-G solvation = -55.049891 kcal Electronic energy + Delta-G solvation = -21781.657439 eV Core-core repulsion = 18732.973800 eV Total energy + Delta-G solvation = -3048.683639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34344 -39.15143 -36.82422 -35.63083 -33.84578 -32.72617 -31.37658 -30.31374 -27.55158 -27.44829 -25.62083 -24.86137 -22.46409 -21.97946 -20.88201 -20.32985 -18.96337 -17.82708 -17.12071 -16.68079 -16.55420 -15.81484 -15.67410 -15.52084 -14.85976 -14.81306 -14.24442 -14.01091 -13.88332 -13.55988 -13.46463 -13.33042 -13.12145 -13.02715 -12.84045 -12.75625 -12.70187 -12.11110 -12.09489 -12.05337 -11.97897 -11.80921 -11.70968 -11.68149 -11.51632 -11.37925 -10.72731 -10.38366 -9.92916 -8.87893 -7.87152 -5.21120 1.43001 1.44367 1.53193 1.78117 2.32037 2.47181 3.30980 3.57421 3.68146 3.81506 3.86212 3.99688 4.06156 4.19916 4.32524 4.40332 4.43796 4.62972 4.65793 4.70695 4.82630 4.84184 4.85738 4.91547 4.93179 4.99204 5.01585 5.05149 5.08830 5.15136 5.25403 5.32132 5.38324 5.41242 5.46323 5.52844 5.64537 5.71782 5.79844 6.18537 6.72274 7.10385 7.40468 7.75790 8.40439 9.22647 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.005555 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.760891 B = 5039.391142 C = 5978.435080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.109 4.109 5 H 0.097 0.903 6 C -0.136 4.136 7 C 0.513 3.487 8 O -0.578 6.578 9 N -0.700 5.700 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.186 3.814 14 N -0.621 5.621 15 C -0.244 4.244 16 H 0.067 0.933 17 C -0.057 4.057 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.131 3.869 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.406 0.594 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.008 0.992 42 H 0.248 0.752 43 H 0.022 0.978 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 -7.178 13.881 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.130 4.130 5 H 0.115 0.885 6 C -0.193 4.193 7 C 0.301 3.699 8 O -0.458 6.458 9 N -0.350 5.350 10 C 0.079 3.921 11 C -0.200 4.200 12 C -0.167 4.167 13 C 0.061 3.939 14 N -0.347 5.347 15 C -0.374 4.374 16 H 0.085 0.915 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.803 3.197 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.201 1.201 23 C 0.004 3.996 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.046 -6.596 13.656 17.659 hybrid contribution 0.485 -0.073 -1.606 1.679 sum -8.561 -6.668 12.051 16.216 Atomic orbital electron populations 1.21770 0.95482 1.02125 1.01607 1.21581 0.96249 0.95109 1.02871 1.21348 0.92262 0.97772 1.01798 1.21383 0.97809 0.91688 1.02116 0.88538 1.21794 1.01644 1.01956 0.93939 1.21203 0.81932 0.92248 0.74539 1.90599 1.56253 1.47592 1.51345 1.45837 1.07095 1.08555 1.73510 1.21325 0.94184 0.82580 0.94049 1.21941 1.02143 0.98947 0.97002 1.23094 0.92845 1.03561 0.97175 1.20941 0.88339 0.97320 0.87302 1.44698 1.12439 1.74788 1.02807 1.19320 0.98962 1.36179 0.82893 0.91474 1.25518 0.95857 1.01504 1.02183 1.70150 1.04315 1.49981 1.34907 0.85147 0.77292 0.77150 0.80147 1.21279 1.21418 1.20125 1.21971 0.91493 0.95434 0.90673 0.92551 0.93682 0.91500 0.91999 0.90001 0.91952 0.93935 0.92217 0.89328 0.91418 0.75793 0.91180 0.91959 0.90583 0.88411 0.89279 0.96277 0.97385 0.94260 0.96076 0.95812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.12 5.69 30.60 0.17 -1.95 16 3 C -0.09 -2.22 4.03 30.59 0.12 -2.10 16 4 C -0.11 -2.62 2.72 -11.54 -0.03 -2.66 16 5 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 6 C -0.14 -2.31 8.84 71.98 0.64 -1.67 16 7 C 0.51 16.70 6.53 87.66 0.57 17.27 16 8 O -0.58 -22.80 12.75 -3.04 -0.04 -22.84 16 9 N -0.70 -22.31 5.07 -416.62 -2.11 -24.43 16 10 C 0.17 5.81 0.83 5.00 0.00 5.81 16 11 C -0.14 -4.21 8.59 71.99 0.62 -3.60 16 12 C -0.13 -4.39 5.97 31.78 0.19 -4.20 16 13 C 0.19 8.93 5.36 86.73 0.47 9.40 16 14 N -0.62 -32.95 3.39 -691.98 -2.35 -35.30 16 15 C -0.24 -14.32 10.28 84.04 0.86 -13.46 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 18 N -0.94 -56.29 10.31 21.65 0.22 -56.06 16 19 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 C 0.13 5.95 6.16 86.86 0.54 6.49 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.15 6.56 -2.39 -0.02 1.13 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.23 7.95 -2.39 -0.02 1.21 16 31 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.09 1.14 6.56 -2.39 -0.02 1.12 16 33 H 0.07 1.06 7.56 -2.38 -0.02 1.04 16 34 H 0.41 11.41 7.93 -92.71 -0.73 10.68 16 35 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 36 H 0.06 2.10 5.92 -2.39 -0.01 2.08 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 39 H 0.09 2.78 8.04 -2.39 -0.02 2.77 16 40 H 0.02 1.00 7.40 -2.38 -0.02 0.98 16 41 H 0.01 0.43 7.49 -2.39 -0.02 0.41 16 42 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.02 0.98 7.98 -2.39 -0.02 0.96 16 44 H 0.02 1.19 6.86 -2.39 -0.02 1.17 16 Total: -1.00 -70.39 340.51 3.31 -67.08 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.23 Total: 18.10 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 5.33 Total: 4.70 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -4.24 Total: -115.79 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.04 Total: -22.84 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -70.39 3.31 -67.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270558133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.035 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds