Wall clock time and date at job start Mon Mar 30 2020 00:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46764 * 2 1 4 4 C 1.53005 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46793 * 305.00251 * 4 3 2 6 6 C 1.52997 * 109.47061 * 64.99861 * 4 3 2 7 7 C 1.50695 * 109.47194 * 185.00347 * 4 3 2 8 8 O 1.21281 * 120.00388 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99661 * 180.02562 * 7 4 3 10 10 C 1.46502 * 119.99814 * 180.02562 * 9 7 4 11 11 C 1.53001 * 110.64240 * 61.68716 * 10 9 7 12 12 C 1.55154 * 110.72097 * 185.02116 * 10 9 7 13 13 C 1.54910 * 101.58031 * 82.86065 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47242 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47053 * 119.99981 * 19 17 15 22 22 H 1.48510 * 109.46679 * 239.99739 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 H 1.09005 * 109.47551 * 59.99976 * 1 2 3 25 25 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47387 * 299.99469 * 1 2 3 27 27 H 1.08998 * 109.47019 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.46937 * 120.00265 * 2 1 3 29 29 H 1.08998 * 109.47226 * 60.00282 * 3 2 1 30 30 H 1.08999 * 109.47610 * 299.99853 * 3 2 1 31 31 H 1.09005 * 109.46998 * 60.00517 * 6 4 3 32 32 H 1.09002 * 109.47483 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47359 * 300.00507 * 6 4 3 34 34 H 0.96998 * 120.00162 * 359.97438 * 9 7 4 35 35 H 1.09003 * 109.47111 * 298.31031 * 11 10 9 36 36 H 1.09003 * 109.47375 * 58.30994 * 11 10 9 37 37 H 1.08999 * 109.47357 * 178.31353 * 11 10 9 38 38 H 1.09002 * 111.00945 * 324.78872 * 12 10 9 39 39 H 1.08999 * 111.00353 * 200.93410 * 12 10 9 40 40 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 41 41 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 42 42 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 44 44 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 4.0722 2.8580 0.1246 8 8 3.2840 3.7764 0.2040 9 7 5.3972 3.1033 0.1460 10 6 5.8855 4.4793 0.2671 11 6 5.4251 5.1008 1.5872 12 6 7.4314 4.5261 0.1435 13 6 7.6208 4.5234 -1.3939 14 7 6.5116 5.3448 -1.9122 15 6 6.5027 6.0098 -3.1092 16 1 5.6377 6.5879 -3.3993 17 6 7.6051 5.9408 -3.9498 18 7 8.6594 5.2366 -3.5962 19 14 7.5930 6.8485 -5.5825 20 1 6.3004 7.5617 -5.7428 21 1 8.7072 7.8298 -5.6115 22 1 7.7617 5.8750 -6.6912 23 6 5.4171 5.3323 -0.9307 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7175 1.4221 -2.1484 32 1 5.1705 0.8332 -1.3062 33 1 3.7172 -0.1910 -1.3960 34 1 6.0276 2.3689 0.0821 35 1 4.3360 5.1359 1.6119 36 1 5.7882 4.4973 2.4191 37 1 5.8232 6.1121 1.6710 38 1 7.8864 3.6442 0.5947 39 1 7.8312 5.4391 0.5849 40 1 7.5541 3.5073 -1.7826 41 1 8.5793 4.9698 -1.6589 42 1 9.4299 5.1887 -4.1834 43 1 5.2033 6.3489 -0.6008 44 1 4.5250 4.8918 -1.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270558142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:51 Heat of formation + Delta-G solvation = -33.882993 kcal Electronic energy + Delta-G solvation = -21731.129207 eV Core-core repulsion = 18683.363434 eV Total energy + Delta-G solvation = -3047.765773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02751 -37.62076 -35.76668 -33.96797 -32.46111 -31.31809 -29.76430 -28.63198 -26.61505 -25.65677 -24.27087 -23.37545 -21.31064 -20.36339 -19.68582 -18.87288 -17.08558 -16.51185 -15.66120 -15.49832 -14.68681 -14.64056 -14.25100 -13.93716 -13.64019 -13.21736 -13.11177 -12.69846 -12.54651 -12.23976 -12.17736 -12.01423 -11.82279 -11.68132 -11.52079 -11.24539 -10.99373 -10.90544 -10.86201 -10.80726 -10.55721 -10.33096 -10.31576 -10.03411 -9.86375 -9.62094 -9.09214 -8.62563 -8.53756 -6.77698 -5.62775 -3.02763 3.02107 3.41510 3.47503 3.50046 3.53861 4.52077 4.72725 4.77364 4.88079 5.11203 5.16020 5.24425 5.27811 5.42663 5.50602 5.56176 5.61110 5.62764 5.72113 5.77757 5.80687 5.84043 5.94101 6.06321 6.08147 6.11893 6.19949 6.26444 6.32712 6.37184 6.40498 6.49633 6.55662 6.75568 6.88938 7.22103 7.48255 7.66899 7.83937 7.95805 8.38019 8.64736 9.26104 9.86873 10.52063 11.41651 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.004917 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.922359 B = 5692.641986 C = 6313.947308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.111 4.111 5 H 0.091 0.909 6 C -0.145 4.145 7 C 0.517 3.483 8 O -0.539 6.539 9 N -0.708 5.708 10 C 0.159 3.841 11 C -0.148 4.148 12 C -0.147 4.147 13 C 0.154 3.846 14 N -0.604 5.604 15 C -0.216 4.216 16 H 0.077 0.923 17 C -0.013 4.013 18 N -0.925 5.925 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.137 3.863 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.010 0.990 41 H 0.107 0.893 42 H 0.250 0.750 43 H 0.028 0.972 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -10.728 10.036 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.132 4.132 5 H 0.109 0.891 6 C -0.202 4.202 7 C 0.303 3.697 8 O -0.416 6.416 9 N -0.359 5.359 10 C 0.072 3.928 11 C -0.207 4.207 12 C -0.186 4.186 13 C 0.029 3.971 14 N -0.330 5.330 15 C -0.344 4.344 16 H 0.095 0.905 17 C -0.208 4.208 18 N -0.574 5.574 19 Si 0.744 3.256 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.011 3.989 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.028 0.972 41 H 0.125 0.875 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.545 -10.001 9.899 16.463 hybrid contribution 0.390 0.012 -0.933 1.011 sum -8.155 -9.988 8.966 15.706 Atomic orbital electron populations 1.21760 0.95939 1.01261 1.01980 1.21600 0.95857 0.96937 1.01916 1.21410 0.92522 0.96282 1.03512 1.21332 0.97644 0.93972 1.00244 0.89095 1.21816 1.01393 1.00899 0.96134 1.20516 0.82364 0.91011 0.75773 1.90650 1.55414 1.46167 1.49416 1.46011 1.06720 1.08929 1.74249 1.21325 0.94909 0.81267 0.95252 1.22023 1.02879 1.00257 0.95512 1.23349 0.92276 1.01173 1.01758 1.21920 0.95571 0.94093 0.85547 1.44515 1.13146 1.57216 1.18158 1.19150 1.00339 1.22213 0.92701 0.90541 1.24749 0.96496 1.00601 0.98973 1.69787 1.05891 1.45024 1.36728 0.86008 0.77303 0.78898 0.83409 1.20552 1.21771 1.21841 1.21590 0.92203 0.96121 0.88999 0.92668 0.92997 0.92783 0.91750 0.92223 0.91272 0.91249 0.91853 0.92053 0.91618 0.77017 0.91117 0.93258 0.91888 0.92006 0.90656 0.97222 0.87516 0.93909 0.95432 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.15 5.69 -26.73 -0.15 -1.30 16 3 C -0.10 -1.16 4.03 -26.73 -0.11 -1.27 16 4 C -0.11 -1.33 2.72 -91.77 -0.25 -1.58 16 5 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.67 8.84 37.16 0.33 -1.34 16 7 C 0.52 8.33 6.38 -10.99 -0.07 8.26 16 8 O -0.54 -10.50 12.86 5.56 0.07 -10.43 16 9 N -0.71 -11.29 5.04 -45.91 -0.23 -11.52 16 10 C 0.16 2.89 0.81 -129.98 -0.11 2.78 16 11 C -0.15 -2.39 8.41 37.16 0.31 -2.08 16 12 C -0.15 -2.70 6.09 -24.58 -0.15 -2.85 16 13 C 0.15 3.67 5.87 -2.53 -0.01 3.66 16 14 N -0.60 -15.88 3.39 -170.07 -0.58 -16.46 16 15 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 16 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 17 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 18 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 19 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C 0.14 3.14 6.13 -3.07 -0.02 3.12 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.70 7.56 -51.93 -0.39 0.31 16 33 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 34 H 0.40 5.43 7.89 -40.82 -0.32 5.11 16 35 H 0.07 1.23 6.44 -51.93 -0.33 0.90 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 38 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 39 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.03 0.65 7.82 -51.93 -0.41 0.24 16 44 H 0.03 0.85 6.48 -51.93 -0.34 0.52 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -31.74 339.70 -7.99 -39.73 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.80 Total: 2.88 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.11 Total: -0.36 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.25 Total: -54.39 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.74 -7.99 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270558142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.850 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds