Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46764 * 2 1 4 4 C 1.53005 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46793 * 305.00251 * 4 3 2 6 6 C 1.52997 * 109.47061 * 64.99861 * 4 3 2 7 7 C 1.50695 * 109.47194 * 185.00347 * 4 3 2 8 8 O 1.21281 * 120.00388 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99661 * 180.02562 * 7 4 3 10 10 C 1.46502 * 119.99814 * 180.02562 * 9 7 4 11 11 C 1.53001 * 110.64240 * 61.68716 * 10 9 7 12 12 C 1.55154 * 110.72097 * 185.02116 * 10 9 7 13 13 C 1.54910 * 101.58031 * 82.86065 * 12 10 9 14 14 N 1.47426 * 104.83209 * 37.01037 * 13 12 10 15 15 C 1.36937 * 125.64487 * 155.84912 * 14 13 12 16 16 H 1.08001 * 119.99600 * 180.02562 * 15 14 13 17 17 C 1.38807 * 120.00345 * 0.02772 * 15 14 13 18 18 N 1.31623 * 120.00215 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99940 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47242 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47053 * 119.99981 * 19 17 15 22 22 H 1.48510 * 109.46679 * 239.99739 * 19 17 15 23 23 C 1.47019 * 108.70209 * 335.87354 * 14 13 12 24 24 H 1.09005 * 109.47551 * 59.99976 * 1 2 3 25 25 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47387 * 299.99469 * 1 2 3 27 27 H 1.08998 * 109.47019 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.46937 * 120.00265 * 2 1 3 29 29 H 1.08998 * 109.47226 * 60.00282 * 3 2 1 30 30 H 1.08999 * 109.47610 * 299.99853 * 3 2 1 31 31 H 1.09005 * 109.46998 * 60.00517 * 6 4 3 32 32 H 1.09002 * 109.47483 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.47359 * 300.00507 * 6 4 3 34 34 H 0.96998 * 120.00162 * 359.97438 * 9 7 4 35 35 H 1.09003 * 109.47111 * 298.31031 * 11 10 9 36 36 H 1.09003 * 109.47375 * 58.30994 * 11 10 9 37 37 H 1.08999 * 109.47357 * 178.31353 * 11 10 9 38 38 H 1.09002 * 111.00945 * 324.78872 * 12 10 9 39 39 H 1.08999 * 111.00353 * 200.93410 * 12 10 9 40 40 H 1.08998 * 110.36709 * 278.17139 * 13 12 10 41 41 H 1.09005 * 110.36466 * 155.84673 * 13 12 10 42 42 H 0.96993 * 120.00387 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.88389 * 120.48020 * 23 14 13 44 44 H 1.09004 * 109.87600 * 241.48978 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 4.0722 2.8580 0.1246 8 8 3.2840 3.7764 0.2040 9 7 5.3972 3.1033 0.1460 10 6 5.8855 4.4793 0.2671 11 6 5.4251 5.1008 1.5872 12 6 7.4314 4.5261 0.1435 13 6 7.6208 4.5234 -1.3939 14 7 6.5116 5.3448 -1.9122 15 6 6.5027 6.0098 -3.1092 16 1 5.6377 6.5879 -3.3993 17 6 7.6051 5.9408 -3.9498 18 7 8.6594 5.2366 -3.5962 19 14 7.5930 6.8485 -5.5825 20 1 6.3004 7.5617 -5.7428 21 1 8.7072 7.8298 -5.6115 22 1 7.7617 5.8750 -6.6912 23 6 5.4171 5.3323 -0.9307 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7175 1.4221 -2.1484 32 1 5.1705 0.8332 -1.3062 33 1 3.7172 -0.1910 -1.3960 34 1 6.0276 2.3689 0.0821 35 1 4.3360 5.1359 1.6119 36 1 5.7882 4.4973 2.4191 37 1 5.8232 6.1121 1.6710 38 1 7.8864 3.6442 0.5947 39 1 7.8312 5.4391 0.5849 40 1 7.5541 3.5073 -1.7826 41 1 8.5793 4.9698 -1.6589 42 1 9.4299 5.1887 -4.1834 43 1 5.2033 6.3489 -0.6008 44 1 4.5250 4.8918 -1.3760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270558142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = -53.908213 kcal Electronic energy + Delta-G solvation = -21731.997566 eV Core-core repulsion = 18683.363434 eV Total energy + Delta-G solvation = -3048.634132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39293 -39.15159 -36.83612 -35.71210 -33.84865 -32.74813 -31.33663 -30.33401 -27.57036 -27.49340 -25.67470 -24.81026 -22.43257 -22.10296 -20.87831 -20.32742 -18.97685 -17.88626 -17.18052 -16.73634 -16.50877 -15.86329 -15.61175 -15.41265 -14.94939 -14.62473 -14.38420 -14.05785 -13.98088 -13.63771 -13.38592 -13.31694 -13.16076 -13.07922 -12.84093 -12.79513 -12.71200 -12.16611 -12.07233 -12.03189 -11.95307 -11.80695 -11.70782 -11.68447 -11.50483 -11.36232 -10.76803 -10.44897 -9.95824 -8.89477 -7.80261 -5.23686 1.44015 1.44458 1.55267 1.75297 2.28658 2.47101 3.28966 3.58224 3.70304 3.78526 3.85423 3.98446 4.03943 4.18043 4.32918 4.39160 4.41350 4.61934 4.64115 4.68188 4.79630 4.81820 4.86103 4.90583 4.92152 4.97098 5.01250 5.05094 5.09396 5.14689 5.24471 5.31520 5.33748 5.41410 5.45816 5.52942 5.61481 5.72891 5.80476 6.29797 6.69699 7.10155 7.39200 7.75924 8.39639 9.21221 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.004917 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.922359 B = 5692.641986 C = 6313.947308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.096 4.096 4 C -0.101 4.101 5 H 0.126 0.874 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.127 4.127 13 C 0.156 3.844 14 N -0.623 5.623 15 C -0.243 4.243 16 H 0.067 0.933 17 C -0.059 4.059 18 N -0.943 5.943 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.289 1.289 23 C 0.137 3.863 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.409 0.591 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.081 0.919 40 H -0.006 1.006 41 H 0.076 0.924 42 H 0.249 0.751 43 H 0.016 0.984 44 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -12.431 11.281 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.134 4.134 4 C -0.122 4.122 5 H 0.144 0.856 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.458 6.458 9 N -0.355 5.355 10 C 0.081 3.919 11 C -0.197 4.197 12 C -0.166 4.166 13 C 0.031 3.969 14 N -0.349 5.349 15 C -0.373 4.373 16 H 0.085 0.915 17 C -0.252 4.252 18 N -0.592 5.592 19 Si 0.806 3.194 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.216 1.216 23 C 0.011 3.989 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.246 0.754 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.012 0.988 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -8.255 -11.731 11.162 18.175 hybrid contribution 0.270 0.560 -1.362 1.497 sum -7.985 -11.170 9.800 16.869 Atomic orbital electron populations 1.21778 0.95724 1.02124 1.01499 1.21571 0.96057 0.94901 1.03120 1.21374 0.92425 0.97938 1.01701 1.21370 0.97616 0.91449 1.01756 0.85607 1.21810 1.01467 1.01968 0.94623 1.21326 0.81945 0.92451 0.74514 1.90637 1.56317 1.47829 1.51013 1.45953 1.07208 1.08344 1.74037 1.21139 0.94612 0.81954 0.94157 1.21935 1.01866 1.00933 0.94968 1.23199 0.92495 1.03432 0.97460 1.21748 0.93427 0.92294 0.89383 1.44792 1.14794 1.57184 1.18161 1.19397 1.00457 1.23033 0.94367 0.91478 1.25527 0.96103 1.01429 1.02103 1.70014 1.06079 1.45613 1.37528 0.85029 0.77450 0.77709 0.79242 1.19934 1.21222 1.21565 1.21657 0.90635 0.96423 0.90197 0.93593 0.91417 0.92943 0.90993 0.90407 0.92393 0.93885 0.94770 0.91858 0.88667 0.75435 0.92675 0.90208 0.91488 0.87991 0.90032 0.98849 0.90651 0.94133 0.96571 0.97467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.68 16 2 C -0.12 -1.89 5.69 30.59 0.17 -1.72 16 3 C -0.10 -2.18 4.03 30.60 0.12 -2.06 16 4 C -0.10 -2.24 2.72 -11.54 -0.03 -2.27 16 5 H 0.13 1.99 8.14 -2.38 -0.02 1.97 16 6 C -0.14 -3.03 8.84 71.98 0.64 -2.39 16 7 C 0.51 16.08 6.38 87.66 0.56 16.64 16 8 O -0.58 -22.94 12.86 -3.03 -0.04 -22.98 16 9 N -0.70 -21.44 5.04 -417.57 -2.10 -23.54 16 10 C 0.17 5.96 0.81 4.79 0.00 5.96 16 11 C -0.14 -4.22 8.41 71.98 0.61 -3.62 16 12 C -0.13 -4.44 6.09 31.99 0.19 -4.25 16 13 C 0.16 7.53 5.87 86.86 0.51 8.03 16 14 N -0.62 -33.65 3.39 -691.99 -2.35 -36.00 16 15 C -0.24 -14.41 10.27 84.03 0.86 -13.55 16 16 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 17 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 18 N -0.94 -55.82 10.09 21.65 0.22 -55.60 16 19 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 C 0.14 6.45 6.13 86.73 0.53 6.98 16 24 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.05 6.57 -2.39 -0.02 1.03 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.43 7.95 -2.39 -0.02 1.41 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 1.33 7.56 -2.39 -0.02 1.31 16 33 H 0.09 1.49 6.57 -2.39 -0.02 1.47 16 34 H 0.41 10.22 7.89 -92.71 -0.73 9.49 16 35 H 0.05 1.88 6.44 -2.39 -0.02 1.86 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 38 H 0.10 2.77 8.04 -2.39 -0.02 2.76 16 39 H 0.08 2.79 8.05 -2.39 -0.02 2.77 16 40 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 41 H 0.08 4.14 5.87 -2.38 -0.01 4.13 16 42 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.02 0.79 7.82 -2.39 -0.02 0.77 16 44 H 0.01 0.38 6.48 -2.38 -0.02 0.37 16 Total: -1.00 -71.50 339.70 3.34 -68.17 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.23 Total: 18.02 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.35 Total: 3.15 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -4.23 Total: -115.14 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.04 Total: -22.98 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -71.50 3.34 -68.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270558142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.258 kcal (2) G-P(sol) polarization free energy of solvation -71.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds