Wall clock time and date at job start Mon Mar 30 2020 00:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.47018 * 125.64727 * 359.68700 * 7 5 4 9 9 C 1.54317 * 107.27322 * 180.97112 * 8 7 5 10 10 C 1.55151 * 102.86592 * 22.52498 * 9 8 7 11 11 H 1.09003 * 111.03601 * 82.38963 * 10 9 8 12 12 C 1.53001 * 111.00689 * 206.22682 * 10 9 8 13 13 C 1.52999 * 109.47150 * 287.19718 * 12 10 9 14 14 N 1.46499 * 109.46712 * 179.97438 * 13 12 10 15 15 C 1.36939 * 119.99777 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00384 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00132 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99420 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46735 * 90.00313 * 19 17 15 21 21 H 1.48502 * 109.46804 * 209.99669 * 19 17 15 22 22 H 1.48492 * 109.47603 * 330.00006 * 19 17 15 23 23 C 1.47425 * 125.64555 * 179.97438 * 7 5 4 24 24 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 29 29 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 30 30 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 33 33 H 1.09001 * 109.88201 * 300.51277 * 8 7 5 34 34 H 1.08999 * 109.88641 * 61.68123 * 8 7 5 35 35 H 1.08997 * 110.92484 * 264.10852 * 9 8 7 36 36 H 1.09004 * 110.74179 * 140.85975 * 9 8 7 37 37 H 1.09001 * 109.46724 * 47.19609 * 12 10 9 38 38 H 1.08996 * 109.47255 * 167.19457 * 12 10 9 39 39 H 1.08996 * 109.47247 * 300.00051 * 13 12 10 40 40 H 1.09005 * 109.47014 * 59.99769 * 13 12 10 41 41 H 0.96996 * 120.00342 * 0.02562 * 14 13 12 42 42 H 0.96999 * 119.99419 * 180.02562 * 18 17 15 43 43 H 1.08994 * 110.37041 * 274.66715 * 23 7 5 44 44 H 1.08999 * 110.36772 * 36.88976 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 6.4581 2.0915 0.0075 9 6 7.8089 2.8373 0.0301 10 6 7.4286 4.2232 0.6149 11 1 7.3790 4.1884 1.7032 12 6 8.4069 5.3028 0.1477 13 6 9.7449 5.1250 0.8681 14 7 10.6817 6.1584 0.4202 15 6 11.9513 6.1997 0.9317 16 1 12.2621 5.4702 1.6650 17 6 12.8389 7.1792 0.5078 18 7 14.0593 7.2186 0.9991 19 14 12.3011 8.4414 -0.7600 20 1 11.7180 9.6195 -0.0690 21 1 13.4756 8.8690 -1.5618 22 1 11.2822 7.8392 -1.6568 23 6 6.0232 4.4444 0.0015 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 6.3643 1.4637 0.8936 34 1 6.3898 1.4795 -0.8919 35 1 8.2131 2.9414 -0.9768 36 1 8.5208 2.3271 0.6790 37 1 8.5588 5.2144 -0.9281 38 1 7.9986 6.2870 0.3773 39 1 9.5929 5.2133 1.9438 40 1 10.1531 4.1407 0.6384 41 1 10.4025 6.8138 -0.2381 42 1 14.6793 7.9033 0.7030 43 1 6.1091 4.8232 -1.0169 44 1 5.4442 5.1348 0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272353618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:51 Heat of formation + Delta-G solvation = -50.941775 kcal Electronic energy + Delta-G solvation = -20052.385034 eV Core-core repulsion = 17003.879537 eV Total energy + Delta-G solvation = -3048.505497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29168 -38.08308 -35.64920 -35.33075 -33.07851 -31.36337 -30.66455 -29.72265 -27.80226 -25.18007 -23.48464 -22.94826 -21.52280 -21.20596 -20.30005 -19.26205 -17.58608 -17.23579 -16.55296 -15.97846 -15.35230 -14.79006 -14.63995 -14.25203 -14.08170 -13.97857 -13.48656 -13.31909 -13.09467 -12.89210 -12.67514 -12.53381 -12.25255 -11.82868 -11.67341 -11.65510 -11.49428 -11.33509 -11.26960 -10.92451 -10.89226 -10.71139 -10.51613 -10.43667 -10.11315 -9.95794 -9.59482 -8.89605 -8.81550 -7.23401 -5.77260 -3.12752 2.46662 2.79347 3.37413 3.40462 3.45275 4.16447 4.43951 4.50221 4.57173 4.57713 4.59017 4.71930 4.88097 4.93585 5.03079 5.13386 5.18351 5.29866 5.31451 5.45345 5.46227 5.48704 5.50279 5.58517 5.59371 5.71308 5.74310 5.78664 5.82490 5.91023 5.95666 5.99755 6.03196 6.11626 6.14440 6.29553 6.71846 6.76146 7.34181 7.99115 7.99259 8.41920 9.21232 9.93745 10.13509 11.41148 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.057734 B = 0.002631 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.866170 B =10641.158212 C =10932.122274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.136 4.136 5 C 0.525 3.475 6 O -0.544 6.544 7 N -0.621 5.621 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.094 4.094 11 H 0.087 0.913 12 C -0.120 4.120 13 C 0.159 3.841 14 N -0.758 5.758 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.886 3.114 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.108 3.892 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.330 -15.807 -3.039 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.176 4.176 5 C 0.314 3.686 6 O -0.422 6.422 7 N -0.355 5.355 8 C -0.023 4.023 9 C -0.166 4.166 10 C -0.114 4.114 11 H 0.105 0.895 12 C -0.158 4.158 13 C 0.032 3.968 14 N -0.404 5.404 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.582 5.582 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.014 4.014 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.045 0.955 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.638 -15.402 -2.908 28.363 hybrid contribution -0.056 0.914 -0.900 1.284 sum -23.693 -14.489 -3.808 28.032 Atomic orbital electron populations 1.21761 0.95683 1.01531 1.02051 1.21546 0.96165 0.96547 1.01994 1.21392 0.92688 0.96632 1.03644 1.21683 0.97979 0.93639 1.04275 1.20445 0.80417 0.91841 0.75877 1.90706 1.54390 1.46814 1.50274 1.48598 1.05124 1.08503 1.73268 1.22101 0.87353 0.91308 1.01548 1.22754 0.95361 0.95676 1.02817 1.22329 0.93231 0.95100 1.00737 0.89488 1.21722 0.95497 0.97830 1.00762 1.20603 0.87573 0.92446 0.96209 1.42729 1.11933 1.34656 1.51050 1.19066 0.86807 1.12167 1.19408 0.89248 1.24692 0.95770 0.98985 0.99858 1.69705 1.05247 1.36555 1.46743 0.86525 0.77510 0.82318 0.82034 1.21058 1.21724 1.20347 1.22340 0.93130 0.84674 1.01276 0.92645 0.92662 0.92772 0.91989 0.91961 0.91203 0.91231 0.88986 0.89029 0.91308 0.91414 0.90094 0.89426 0.91626 0.91554 0.95628 0.95491 0.80696 0.93067 0.91322 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.11 -0.85 4.50 -26.73 -0.12 -0.97 16 4 C -0.14 -1.06 4.89 -27.88 -0.14 -1.19 16 5 C 0.52 6.19 7.85 -10.99 -0.09 6.10 16 6 O -0.54 -8.56 16.24 5.56 0.09 -8.47 16 7 N -0.62 -6.75 3.33 -170.52 -0.57 -7.32 16 8 C 0.10 0.82 6.48 -3.07 -0.02 0.80 16 9 C -0.13 -1.22 5.91 -24.90 -0.15 -1.37 16 10 C -0.09 -1.07 3.00 -88.46 -0.27 -1.33 16 11 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.12 -1.69 4.84 -26.73 -0.13 -1.82 16 13 C 0.16 2.94 6.16 -4.04 -0.02 2.91 16 14 N -0.76 -18.01 5.41 -59.91 -0.32 -18.33 16 15 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 16 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 17 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 18 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 19 Si 0.89 22.20 27.74 -169.99 -4.71 17.49 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 23 C 0.11 1.26 6.38 -2.52 -0.02 1.25 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.50 7.75 -51.93 -0.40 0.09 16 41 H 0.36 8.35 5.53 -40.82 -0.23 8.12 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 44 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -33.74 352.89 -8.63 -42.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.22 Total: 1.86 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.99 Total: -4.23 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.12 Total: -54.34 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.74 -8.63 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272353618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.578 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds