Wall clock time and date at job start Mon Mar 30 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 C 1.53006 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 3 8 8 C 1.47018 * 125.64727 * 359.68700 * 7 5 4 9 9 C 1.54317 * 107.27322 * 180.97112 * 8 7 5 10 10 C 1.55151 * 102.86592 * 22.52498 * 9 8 7 11 11 H 1.09003 * 111.03601 * 82.38963 * 10 9 8 12 12 C 1.53001 * 111.00689 * 206.22682 * 10 9 8 13 13 C 1.52999 * 109.47150 * 287.19718 * 12 10 9 14 14 N 1.46499 * 109.46712 * 179.97438 * 13 12 10 15 15 C 1.36939 * 119.99777 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00384 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00132 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99420 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.46735 * 90.00313 * 19 17 15 21 21 H 1.48502 * 109.46804 * 209.99669 * 19 17 15 22 22 H 1.48492 * 109.47603 * 330.00006 * 19 17 15 23 23 C 1.47425 * 125.64555 * 179.97438 * 7 5 4 24 24 H 1.09000 * 109.47380 * 300.00763 * 1 2 3 25 25 H 1.09001 * 109.46997 * 60.00426 * 1 2 3 26 26 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47452 * 240.00000 * 2 1 3 28 28 H 1.09001 * 109.46997 * 119.99574 * 2 1 3 29 29 H 1.09001 * 109.47502 * 60.00153 * 3 2 1 30 30 H 1.09001 * 109.47289 * 299.99950 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 33 33 H 1.09001 * 109.88201 * 300.51277 * 8 7 5 34 34 H 1.08999 * 109.88641 * 61.68123 * 8 7 5 35 35 H 1.08997 * 110.92484 * 264.10852 * 9 8 7 36 36 H 1.09004 * 110.74179 * 140.85975 * 9 8 7 37 37 H 1.09001 * 109.46724 * 47.19609 * 12 10 9 38 38 H 1.08996 * 109.47255 * 167.19457 * 12 10 9 39 39 H 1.08996 * 109.47247 * 300.00051 * 13 12 10 40 40 H 1.09005 * 109.47014 * 59.99769 * 13 12 10 41 41 H 0.96996 * 120.00342 * 0.02562 * 14 13 12 42 42 H 0.96999 * 119.99419 * 180.02562 * 18 17 15 43 43 H 1.08994 * 110.37041 * 274.66715 * 23 7 5 44 44 H 1.08999 * 110.36772 * 36.88976 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2843 3.7851 0.0008 7 7 5.3974 3.1095 0.0014 8 6 6.4581 2.0915 0.0075 9 6 7.8089 2.8373 0.0301 10 6 7.4286 4.2232 0.6149 11 1 7.3790 4.1884 1.7032 12 6 8.4069 5.3028 0.1477 13 6 9.7449 5.1250 0.8681 14 7 10.6817 6.1584 0.4202 15 6 11.9513 6.1997 0.9317 16 1 12.2621 5.4702 1.6650 17 6 12.8389 7.1792 0.5078 18 7 14.0593 7.2186 0.9991 19 14 12.3011 8.4414 -0.7600 20 1 11.7180 9.6195 -0.0690 21 1 13.4756 8.8690 -1.5618 22 1 11.2822 7.8392 -1.6568 23 6 6.0232 4.4444 0.0015 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9330 0.9288 0.8909 32 1 3.9337 0.9285 -0.8891 33 1 6.3643 1.4637 0.8936 34 1 6.3898 1.4795 -0.8919 35 1 8.2131 2.9414 -0.9768 36 1 8.5208 2.3271 0.6790 37 1 8.5588 5.2144 -0.9281 38 1 7.9986 6.2870 0.3773 39 1 9.5929 5.2133 1.9438 40 1 10.1531 4.1407 0.6384 41 1 10.4025 6.8138 -0.2381 42 1 14.6793 7.9033 0.7030 43 1 6.1091 4.8232 -1.0169 44 1 5.4442 5.1348 0.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272353618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:50 Heat of formation + Delta-G solvation = -72.249202 kcal Electronic energy + Delta-G solvation = -20053.308993 eV Core-core repulsion = 17003.879537 eV Total energy + Delta-G solvation = -3049.429457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16248 -39.03295 -36.99537 -36.22183 -34.56797 -33.04698 -31.45013 -30.66313 -29.04926 -26.19355 -24.88361 -23.74947 -23.01505 -21.92032 -21.30100 -20.11708 -19.58712 -18.06688 -17.38482 -16.79383 -16.62279 -16.07018 -15.86120 -15.71372 -15.13861 -14.78814 -14.61358 -14.36248 -14.21877 -13.99886 -13.75376 -13.44386 -13.22708 -13.14107 -12.91614 -12.81776 -12.39408 -12.21161 -12.13365 -12.08476 -11.88796 -11.85587 -11.72524 -11.55642 -11.49228 -11.44234 -10.95795 -10.89150 -9.67246 -9.29127 -8.03104 -5.36567 1.38088 1.41589 1.48963 1.60519 1.98783 2.48399 3.28453 3.36158 3.54681 3.69408 3.80788 3.93100 3.99700 4.05485 4.30502 4.34114 4.35424 4.45503 4.46944 4.54446 4.59087 4.64838 4.73530 4.77757 4.84543 4.88664 4.91739 4.99716 5.00683 5.09840 5.12724 5.21949 5.27656 5.34035 5.36447 5.38869 5.45180 5.50322 5.75902 6.21285 6.52375 7.08176 7.12882 7.85200 8.03410 9.18296 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.057734 B = 0.002631 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.866170 B =10641.158212 C =10932.122274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.127 4.127 5 C 0.516 3.484 6 O -0.595 6.595 7 N -0.622 5.622 8 C 0.100 3.900 9 C -0.127 4.127 10 C -0.087 4.087 11 H 0.087 0.913 12 C -0.107 4.107 13 C 0.155 3.845 14 N -0.763 5.763 15 C -0.236 4.236 16 H 0.057 0.943 17 C -0.067 4.067 18 N -0.984 5.984 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.250 1.250 23 C 0.108 3.892 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.033 0.967 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.067 0.933 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.669 -17.400 -4.221 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.166 4.166 5 C 0.307 3.693 6 O -0.476 6.476 7 N -0.355 5.355 8 C -0.021 4.021 9 C -0.164 4.164 10 C -0.106 4.106 11 H 0.105 0.895 12 C -0.145 4.145 13 C 0.029 3.971 14 N -0.408 5.408 15 C -0.367 4.367 16 H 0.075 0.925 17 C -0.258 4.258 18 N -0.634 5.634 19 Si 0.784 3.216 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.174 1.174 23 C -0.014 4.014 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.199 0.801 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -25.007 -17.047 -4.092 30.540 hybrid contribution 0.366 1.347 -0.449 1.467 sum -24.641 -15.700 -4.541 29.568 Atomic orbital electron populations 1.21791 0.95893 1.02085 1.01570 1.21515 0.95995 0.95066 1.03081 1.21353 0.93237 0.97713 1.01903 1.21725 0.97377 0.91095 1.06426 1.21221 0.80211 0.93019 0.74810 1.90683 1.55657 1.48601 1.52656 1.48718 1.05551 1.08726 1.72489 1.22279 0.85389 0.90696 1.03752 1.22770 0.96429 0.94472 1.02771 1.22176 0.92283 0.95446 1.00715 0.89514 1.21569 0.93564 0.98876 1.00526 1.20792 0.88715 0.91193 0.96357 1.42784 1.11027 1.36021 1.51012 1.19066 0.88708 1.10829 1.18116 0.92487 1.25558 0.95843 1.01703 1.02734 1.69889 1.06805 1.37823 1.48911 0.85379 0.77474 0.79316 0.79434 1.20577 1.22182 1.17430 1.22221 0.93060 0.85310 1.00858 0.93209 0.93169 0.91659 0.90798 0.90845 0.93078 0.93017 0.86678 0.86608 0.89200 0.89109 0.90087 0.88704 0.91029 0.91753 0.96107 0.94914 0.80142 0.93338 0.91464 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.18 5.93 30.59 0.18 -0.99 16 3 C -0.10 -1.56 4.50 30.60 0.14 -1.42 16 4 C -0.13 -1.64 4.89 29.85 0.15 -1.49 16 5 C 0.52 11.47 7.85 87.66 0.69 12.16 16 6 O -0.59 -18.88 16.24 -3.04 -0.05 -18.93 16 7 N -0.62 -12.21 3.33 -811.78 -2.70 -14.91 16 8 C 0.10 1.28 6.48 86.73 0.56 1.84 16 9 C -0.13 -2.03 5.91 31.78 0.19 -1.84 16 10 C -0.09 -1.79 3.00 -9.40 -0.03 -1.82 16 11 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.11 -2.83 4.84 30.59 0.15 -2.68 16 13 C 0.16 5.54 6.16 86.38 0.53 6.07 16 14 N -0.76 -35.35 5.41 -343.45 -1.86 -37.21 16 15 C -0.24 -13.54 10.47 84.03 0.88 -12.66 16 16 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 17 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 18 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 19 Si 0.96 45.52 27.74 68.60 1.90 47.42 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 23 C 0.11 2.40 6.38 86.86 0.55 2.96 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 30 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.33 7.91 -2.39 -0.02 1.31 16 36 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 37 H 0.07 1.83 7.97 -2.39 -0.02 1.81 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.03 1.15 7.75 -2.38 -0.02 1.13 16 41 H 0.37 16.11 5.53 -92.71 -0.51 15.60 16 42 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 43 H 0.07 1.50 8.04 -2.39 -0.02 1.49 16 44 H 0.06 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -74.64 352.89 3.14 -71.50 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.37 Total: 19.43 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.17 Total: -4.32 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.25 Total: -115.11 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.90 Total: 47.42 kcal Total: -74.64 3.14 -71.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272353618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.746 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds