Wall clock time and date at job start Mon Mar 30 2020 00:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.53002 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55766 * 29.29474 * 4 3 2 6 6 C 1.53002 * 117.49773 * 243.61158 * 4 3 2 7 7 C 1.53000 * 60.02940 * 252.51785 * 6 4 3 8 8 H 1.09008 * 117.49673 * 107.47884 * 7 6 4 9 9 C 1.50692 * 117.50104 * 252.47218 * 7 6 4 10 10 O 1.21289 * 119.99816 * 68.61089 * 9 7 6 11 11 N 1.34775 * 120.00347 * 248.61074 * 9 7 6 12 12 C 1.46497 * 119.99882 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47152 * 90.00048 * 12 11 9 14 14 C 1.46499 * 120.00113 * 179.97438 * 11 9 7 15 15 C 1.53000 * 109.47175 * 89.99859 * 14 11 9 16 16 N 1.46499 * 109.47175 * 179.97438 * 15 14 11 17 17 C 1.36940 * 119.99959 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00048 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00193 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46885 * 89.99842 * 21 19 17 23 23 H 1.48500 * 109.47553 * 210.00182 * 21 19 17 24 24 H 1.48502 * 109.47185 * 330.00439 * 21 19 17 25 25 H 1.08998 * 109.47674 * 300.00088 * 1 2 3 26 26 H 1.09002 * 109.47078 * 60.00113 * 1 2 3 27 27 H 1.08999 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47244 * 240.00197 * 2 1 3 29 29 H 1.09002 * 109.47078 * 119.99887 * 2 1 3 30 30 H 1.09007 * 109.47338 * 60.00202 * 3 2 1 31 31 H 1.08996 * 109.47269 * 300.00273 * 3 2 1 32 32 H 1.09002 * 117.49918 * 145.01819 * 6 4 3 33 33 H 1.09002 * 117.49754 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47170 * 209.99894 * 12 11 9 35 35 H 1.08997 * 109.47467 * 329.99731 * 12 11 9 36 36 H 1.09003 * 109.47111 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.46958 * 299.99976 * 13 12 11 38 38 H 1.09002 * 109.47205 * 59.99994 * 13 12 11 39 39 H 1.09005 * 109.47451 * 210.00368 * 14 11 9 40 40 H 1.09001 * 109.47455 * 330.00171 * 14 11 9 41 41 H 1.08994 * 109.47358 * 300.00138 * 15 14 11 42 42 H 1.09005 * 109.47155 * 60.00398 * 15 14 11 43 43 H 0.96995 * 120.00364 * 0.02562 * 16 15 14 44 44 H 0.97002 * 119.99938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5851 -0.4821 6 6 4.2769 2.0457 1.2149 7 6 4.2766 2.7953 -0.1189 8 1 3.6511 3.6847 -0.1962 9 6 5.5693 2.8408 -0.8918 10 8 6.0126 1.8287 -1.3922 11 7 6.2330 4.0059 -1.0272 12 6 5.6979 5.2282 -0.4224 13 6 6.2457 5.3763 0.9984 14 6 7.4901 4.0500 -1.7782 15 6 7.1945 4.3422 -3.2507 16 7 8.4517 4.3868 -4.0016 17 6 8.4365 4.6356 -5.3481 18 1 7.4977 4.7985 -5.8566 19 6 9.6276 4.6774 -6.0597 20 7 9.6130 4.9170 -7.3538 21 14 11.2513 4.3949 -5.1804 22 1 11.5791 2.9466 -5.1995 23 1 12.3257 5.1547 -5.8686 24 1 11.1399 4.8586 -3.7741 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.2121 1.5850 1.5331 33 1 3.6519 2.4419 2.0152 34 1 5.9974 6.0900 -1.0189 35 1 4.6100 5.1705 -0.3882 36 1 5.8479 6.2860 1.4483 37 1 5.9461 4.5145 1.5949 38 1 7.3336 5.4340 0.9642 39 1 8.1282 4.8353 -1.3729 40 1 7.9979 3.0892 -1.6934 41 1 6.5565 3.5569 -3.6560 42 1 6.6868 5.3030 -3.3357 43 1 9.2948 4.2401 -3.5450 44 1 10.4454 4.9459 -7.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273598079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:47 Heat of formation + Delta-G solvation = -13.583285 kcal Electronic energy + Delta-G solvation = -20531.157929 eV Core-core repulsion = 17484.272417 eV Total energy + Delta-G solvation = -3046.885512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23800 -37.63195 -36.10493 -34.75340 -34.05469 -31.79227 -30.50452 -28.49946 -27.50443 -24.69474 -23.60538 -22.66911 -22.07512 -21.25920 -20.66423 -18.73024 -17.62042 -17.29622 -16.22376 -15.49407 -15.26948 -14.85468 -14.39897 -14.03100 -13.91792 -13.70516 -13.68526 -13.49891 -13.05630 -12.76686 -12.58314 -12.49526 -12.31750 -11.93256 -11.56752 -11.51863 -11.32554 -11.27814 -11.12948 -11.06962 -10.99262 -10.72016 -10.37912 -10.15045 -10.13080 -9.64779 -9.56672 -8.86835 -8.55723 -7.21577 -5.73849 -3.09850 2.55482 2.98584 3.39794 3.43733 3.47816 3.68066 4.24612 4.54038 4.56208 4.62127 4.75843 4.82768 4.89502 4.95186 5.03423 5.09868 5.24405 5.27801 5.41928 5.46639 5.50048 5.50720 5.55132 5.59165 5.63111 5.64129 5.70210 5.76466 5.79532 5.80939 5.97846 5.98585 6.01301 6.04742 6.19031 6.51060 6.67129 6.85718 7.49380 8.01563 8.30544 8.44584 9.23183 9.95386 10.14906 11.44573 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.003606 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.862111 B = 7761.983055 C = 8430.953440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.187 4.187 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.534 6.534 11 N -0.604 5.604 12 C 0.104 3.896 13 C -0.170 4.170 14 C 0.105 3.895 15 C 0.147 3.853 16 N -0.754 5.754 17 C -0.242 4.242 18 H 0.090 0.910 19 C 0.004 3.996 20 N -0.935 5.935 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -3.159 22.300 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.208 4.208 8 H 0.141 0.859 9 C 0.329 3.671 10 O -0.411 6.411 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.228 4.228 14 C -0.018 4.018 15 C 0.019 3.981 16 N -0.400 5.400 17 C -0.372 4.372 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.583 5.583 21 Si 0.717 3.283 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.193 0.807 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.585 -3.636 21.790 27.036 hybrid contribution 1.288 0.089 0.437 1.363 sum -14.298 -3.547 22.228 26.666 Atomic orbital electron populations 1.21780 0.95912 1.01615 1.01742 1.21503 0.95602 0.96528 1.02398 1.21239 0.91937 0.97376 1.02141 1.22474 0.94631 0.95728 1.00920 0.86423 1.23069 1.03003 1.02256 0.90286 1.22346 0.97939 0.98622 1.01913 0.85917 1.19645 0.84686 0.82962 0.79850 1.90722 1.68190 1.33796 1.48377 1.47819 1.24363 1.08299 1.53176 1.21597 0.98871 0.87395 0.94056 1.22201 1.02010 1.01986 0.96619 1.21705 0.84576 1.03036 0.92473 1.20888 0.89850 0.98502 0.88883 1.42563 1.02479 1.88080 1.06856 1.19039 0.95082 1.40734 0.82353 0.89254 1.24672 0.97289 1.01799 0.95447 1.69705 1.26348 1.56163 1.06057 0.86516 0.84857 0.78044 0.78927 1.20976 1.21694 1.20356 0.92871 0.92684 0.92775 0.91674 0.91880 0.91737 0.91323 0.88472 0.87996 0.89902 0.90355 0.91595 0.92348 0.92265 0.90636 0.89898 0.95098 0.95627 0.80687 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.93 5.89 -26.73 -0.16 -1.08 16 3 C -0.09 -0.71 5.50 -26.73 -0.15 -0.86 16 4 C -0.12 -1.20 5.25 -90.58 -0.48 -1.67 16 5 H 0.12 1.45 7.61 -51.93 -0.39 1.05 16 6 C -0.15 -1.30 9.88 -26.73 -0.26 -1.57 16 7 C -0.19 -2.00 5.01 -91.74 -0.46 -2.46 16 8 H 0.12 1.06 6.44 -51.92 -0.33 0.73 16 9 C 0.54 8.14 7.46 -10.99 -0.08 8.06 16 10 O -0.53 -10.39 15.84 5.55 0.09 -10.30 16 11 N -0.60 -8.46 2.47 -173.69 -0.43 -8.89 16 12 C 0.10 1.04 5.95 -4.04 -0.02 1.02 16 13 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 14 C 0.10 1.76 5.52 -4.04 -0.02 1.74 16 15 C 0.15 3.08 6.58 -4.04 -0.03 3.06 16 16 N -0.75 -18.96 5.41 -59.91 -0.32 -19.29 16 17 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 18 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 19 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 20 N -0.93 -30.14 13.97 55.49 0.78 -29.37 16 21 Si 0.89 22.72 27.73 -169.99 -4.71 18.01 16 22 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 34 H 0.08 0.83 8.07 -51.93 -0.42 0.42 16 35 H 0.08 0.64 5.99 -51.93 -0.31 0.33 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 40 H 0.08 1.53 7.42 -51.93 -0.39 1.14 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.36 8.73 5.53 -40.82 -0.23 8.51 16 44 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -34.73 358.44 -8.35 -43.08 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.98 Total: 4.12 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.16 Total: -2.76 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.02 Total: -57.55 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.73 -8.35 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.495 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds