Wall clock time and date at job start Mon Mar 30 2020 00:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.53002 * 109.47365 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55766 * 29.29474 * 4 3 2 6 6 C 1.53002 * 117.49773 * 243.61158 * 4 3 2 7 7 C 1.53000 * 60.02940 * 252.51785 * 6 4 3 8 8 H 1.09008 * 117.49673 * 107.47884 * 7 6 4 9 9 C 1.50692 * 117.50104 * 252.47218 * 7 6 4 10 10 O 1.21289 * 119.99816 * 68.61089 * 9 7 6 11 11 N 1.34775 * 120.00347 * 248.61074 * 9 7 6 12 12 C 1.46497 * 119.99882 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47152 * 90.00048 * 12 11 9 14 14 C 1.46499 * 120.00113 * 179.97438 * 11 9 7 15 15 C 1.53000 * 109.47175 * 89.99859 * 14 11 9 16 16 N 1.46499 * 109.47175 * 179.97438 * 15 14 11 17 17 C 1.36940 * 119.99959 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00208 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99984 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00048 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00193 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46885 * 89.99842 * 21 19 17 23 23 H 1.48500 * 109.47553 * 210.00182 * 21 19 17 24 24 H 1.48502 * 109.47185 * 330.00439 * 21 19 17 25 25 H 1.08998 * 109.47674 * 300.00088 * 1 2 3 26 26 H 1.09002 * 109.47078 * 60.00113 * 1 2 3 27 27 H 1.08999 * 109.46922 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47244 * 240.00197 * 2 1 3 29 29 H 1.09002 * 109.47078 * 119.99887 * 2 1 3 30 30 H 1.09007 * 109.47338 * 60.00202 * 3 2 1 31 31 H 1.08996 * 109.47269 * 300.00273 * 3 2 1 32 32 H 1.09002 * 117.49918 * 145.01819 * 6 4 3 33 33 H 1.09002 * 117.49754 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47170 * 209.99894 * 12 11 9 35 35 H 1.08997 * 109.47467 * 329.99731 * 12 11 9 36 36 H 1.09003 * 109.47111 * 179.97438 * 13 12 11 37 37 H 1.09002 * 109.46958 * 299.99976 * 13 12 11 38 38 H 1.09002 * 109.47205 * 59.99994 * 13 12 11 39 39 H 1.09005 * 109.47451 * 210.00368 * 14 11 9 40 40 H 1.09001 * 109.47455 * 330.00171 * 14 11 9 41 41 H 1.08994 * 109.47358 * 300.00138 * 15 14 11 42 42 H 1.09005 * 109.47155 * 60.00398 * 15 14 11 43 43 H 0.96995 * 120.00364 * 0.02562 * 16 15 14 44 44 H 0.97002 * 119.99938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5851 -0.4821 6 6 4.2769 2.0457 1.2149 7 6 4.2766 2.7953 -0.1189 8 1 3.6511 3.6847 -0.1962 9 6 5.5693 2.8408 -0.8918 10 8 6.0126 1.8287 -1.3922 11 7 6.2330 4.0059 -1.0272 12 6 5.6979 5.2282 -0.4224 13 6 6.2457 5.3763 0.9984 14 6 7.4901 4.0500 -1.7782 15 6 7.1945 4.3422 -3.2507 16 7 8.4517 4.3868 -4.0016 17 6 8.4365 4.6356 -5.3481 18 1 7.4977 4.7985 -5.8566 19 6 9.6276 4.6774 -6.0597 20 7 9.6130 4.9170 -7.3538 21 14 11.2513 4.3949 -5.1804 22 1 11.5791 2.9466 -5.1995 23 1 12.3257 5.1547 -5.8686 24 1 11.1399 4.8586 -3.7741 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.2121 1.5850 1.5331 33 1 3.6519 2.4419 2.0152 34 1 5.9974 6.0900 -1.0189 35 1 4.6100 5.1705 -0.3882 36 1 5.8479 6.2860 1.4483 37 1 5.9461 4.5145 1.5949 38 1 7.3336 5.4340 0.9642 39 1 8.1282 4.8353 -1.3729 40 1 7.9979 3.0892 -1.6934 41 1 6.5565 3.5569 -3.6560 42 1 6.6868 5.3030 -3.3357 43 1 9.2948 4.2401 -3.5450 44 1 10.4454 4.9459 -7.8511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273598079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:46 Heat of formation + Delta-G solvation = -35.503768 kcal Electronic energy + Delta-G solvation = -20532.108472 eV Core-core repulsion = 17484.272417 eV Total energy + Delta-G solvation = -3047.836055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33110 -38.55064 -37.41365 -36.49083 -34.74757 -33.78183 -31.77350 -29.86828 -28.29896 -26.17073 -24.61544 -24.03121 -23.03636 -22.60328 -21.42924 -20.05775 -19.44157 -18.36766 -17.48899 -16.62282 -16.36602 -16.09055 -15.77287 -15.47823 -15.21426 -15.09135 -14.71086 -14.65498 -14.20013 -13.81890 -13.67661 -13.45724 -13.15428 -13.03270 -12.96731 -12.87780 -12.61479 -12.37423 -12.18990 -12.12635 -12.02426 -11.92963 -11.86196 -11.63652 -11.13615 -11.05511 -10.91805 -10.75451 -9.75742 -9.40936 -8.08528 -5.44743 1.34448 1.40187 1.45609 1.47088 1.89798 2.44417 2.85736 3.22247 3.39670 3.68938 3.73444 3.82126 3.99615 4.10622 4.10784 4.19838 4.23792 4.30933 4.37576 4.43489 4.48823 4.59654 4.66054 4.83831 4.87677 4.89719 4.95132 4.95859 5.00408 5.02884 5.05259 5.09906 5.22582 5.37702 5.39962 5.41955 5.51855 5.53832 5.67652 6.14298 6.39887 6.99335 7.15884 7.72495 7.94302 9.12838 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.003606 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.862111 B = 7761.983055 C = 8430.953440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.129 4.129 5 H 0.085 0.915 6 C -0.124 4.124 7 C -0.191 4.191 8 H 0.151 0.849 9 C 0.530 3.470 10 O -0.591 6.591 11 N -0.602 5.602 12 C 0.096 3.904 13 C -0.163 4.163 14 C 0.118 3.882 15 C 0.151 3.849 16 N -0.755 5.755 17 C -0.244 4.244 18 H 0.052 0.948 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.960 3.040 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.245 1.245 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.001 0.999 42 H 0.034 0.966 43 H 0.368 0.632 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -2.071 25.807 30.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.148 4.148 5 H 0.103 0.897 6 C -0.161 4.161 7 C -0.212 4.212 8 H 0.169 0.831 9 C 0.321 3.679 10 O -0.472 6.472 11 N -0.333 5.333 12 C -0.025 4.025 13 C -0.221 4.221 14 C -0.006 4.006 15 C 0.024 3.976 16 N -0.401 5.401 17 C -0.374 4.374 18 H 0.070 0.930 19 C -0.254 4.254 20 N -0.632 5.632 21 Si 0.786 3.214 22 H -0.207 1.207 23 H -0.215 1.215 24 H -0.170 1.170 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.052 0.948 43 H 0.202 0.798 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.148 -2.514 25.360 30.170 hybrid contribution 1.351 -0.259 -0.715 1.550 sum -14.798 -2.773 24.645 28.880 Atomic orbital electron populations 1.21763 0.94887 1.01970 1.02205 1.21505 0.96467 0.96434 1.01780 1.21217 0.90058 0.97594 1.03042 1.22467 0.95998 0.94344 1.01962 0.89712 1.23178 1.02628 1.00290 0.90051 1.22368 0.95954 1.00008 1.02850 0.83119 1.20503 0.85765 0.82306 0.79365 1.90693 1.69853 1.35829 1.50823 1.47960 1.23323 1.09660 1.52390 1.21940 1.00349 0.85355 0.94866 1.22146 1.01292 1.03352 0.95306 1.21386 0.86381 1.02775 0.90092 1.20938 0.87859 0.97665 0.91169 1.42509 1.04277 1.87817 1.05511 1.18980 0.93845 1.40249 0.84365 0.93035 1.25586 1.01664 1.01855 0.96265 1.69890 1.27570 1.57631 1.08085 0.85338 0.78954 0.77878 0.79203 1.20727 1.21473 1.16954 0.91659 0.92919 0.92556 0.93421 0.91505 0.89326 0.91769 0.89637 0.84372 0.89808 0.87936 0.89087 0.92069 0.93371 0.88092 0.91799 0.98136 0.94827 0.79815 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.76 5.89 30.59 0.18 -1.58 16 3 C -0.08 -1.14 5.50 30.60 0.17 -0.97 16 4 C -0.13 -2.47 5.25 -10.77 -0.06 -2.53 16 5 H 0.08 2.21 7.61 -2.39 -0.02 2.19 16 6 C -0.12 -1.84 9.88 30.60 0.30 -1.54 16 7 C -0.19 -3.71 5.01 -11.52 -0.06 -3.77 16 8 H 0.15 2.05 6.44 -2.38 -0.02 2.03 16 9 C 0.53 15.84 7.46 87.65 0.65 16.49 16 10 O -0.59 -23.97 15.84 -3.06 -0.05 -24.02 16 11 N -0.60 -16.15 2.47 -821.82 -2.03 -18.18 16 12 C 0.10 1.64 5.95 86.38 0.51 2.15 16 13 C -0.16 -2.13 10.24 71.98 0.74 -1.39 16 14 C 0.12 3.87 5.52 86.38 0.48 4.35 16 15 C 0.15 6.41 6.58 86.38 0.57 6.98 16 16 N -0.75 -38.01 5.41 -343.45 -1.86 -39.86 16 17 C -0.24 -14.79 10.47 84.03 0.88 -13.91 16 18 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 19 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 20 N -0.98 -64.86 13.97 21.65 0.30 -64.56 16 21 Si 0.96 46.72 27.73 68.60 1.90 48.63 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.83 7.88 -2.38 -0.02 0.81 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.14 1.09 8.03 -2.39 -0.02 1.08 16 34 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 35 H 0.10 1.27 5.99 -2.39 -0.01 1.25 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.10 2.82 8.07 -2.38 -0.02 2.80 16 40 H 0.06 2.37 7.42 -2.39 -0.02 2.35 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.37 17.31 5.53 -92.71 -0.51 16.80 16 44 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -79.10 358.44 4.20 -74.91 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.38 Total: 23.15 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.55 Total: -0.06 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -3.59 Total: -122.60 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.63 kcal Total: -79.10 4.20 -74.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273598079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.404 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds