Wall clock time and date at job start Mon Mar 30 2020 00:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.47004 * 2 1 4 4 C 1.52997 * 109.46876 * 185.15177 * 3 2 1 5 5 H 1.09004 * 109.47493 * 55.49711 * 4 3 2 6 6 C 1.53002 * 109.47111 * 295.49576 * 4 3 2 7 7 C 1.53002 * 109.47048 * 304.82764 * 6 4 3 8 8 C 1.50703 * 109.46928 * 175.49384 * 4 3 2 9 9 O 1.21276 * 120.00144 * 10.73468 * 8 4 3 10 10 N 1.34776 * 120.00098 * 190.72928 * 8 4 3 11 11 C 1.46497 * 120.00371 * 175.21562 * 10 8 4 12 12 C 1.46506 * 119.99874 * 355.21792 * 10 8 4 13 13 C 1.53939 * 113.74099 * 216.88846 * 12 10 8 14 14 N 1.47814 * 86.04122 * 222.08496 * 13 12 10 15 15 C 1.36930 * 134.45956 * 204.64608 * 14 13 12 16 16 H 1.08006 * 119.99801 * 179.86750 * 15 14 13 17 17 C 1.38809 * 119.99957 * 359.86847 * 15 14 13 18 18 N 1.31612 * 120.00058 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46941 * 90.00045 * 19 17 15 21 21 H 1.48500 * 109.46920 * 209.99647 * 19 17 15 22 22 H 1.48492 * 109.47398 * 329.99889 * 19 17 15 23 23 C 1.47584 * 91.04478 * 24.55032 * 14 13 12 24 24 H 1.09002 * 109.47477 * 300.00649 * 1 2 3 25 25 H 1.09004 * 109.47561 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47462 * 240.00132 * 2 1 3 28 28 H 1.09000 * 109.47338 * 119.99632 * 2 1 3 29 29 H 1.08997 * 109.46949 * 65.15358 * 3 2 1 30 30 H 1.09000 * 109.46715 * 305.14623 * 3 2 1 31 31 H 1.08991 * 109.47379 * 64.83362 * 6 4 3 32 32 H 1.08999 * 109.46716 * 184.83395 * 6 4 3 33 33 H 1.08998 * 109.47169 * 305.40400 * 7 6 4 34 34 H 1.09002 * 109.46860 * 65.40316 * 7 6 4 35 35 H 1.08999 * 109.46888 * 185.40081 * 7 6 4 36 36 H 1.09004 * 109.47030 * 94.86469 * 11 10 8 37 37 H 1.08993 * 109.47309 * 214.86928 * 11 10 8 38 38 H 1.09007 * 109.46829 * 334.87081 * 11 10 8 39 39 H 1.08997 * 112.94232 * 348.48664 * 12 10 8 40 40 H 1.08994 * 113.77136 * 336.35379 * 13 12 10 41 41 H 1.09001 * 113.76702 * 107.74935 * 13 12 10 42 42 H 0.97007 * 120.00057 * 180.02562 * 18 17 15 43 43 H 1.09006 * 113.77048 * 221.14957 * 23 14 13 44 44 H 1.09003 * 113.77035 * 89.76000 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4445 -0.1295 5 1 3.8541 0.8885 -1.0212 6 6 4.1820 0.7855 1.1055 7 6 3.6793 1.4924 2.3659 8 6 4.0573 2.8643 -0.2408 9 8 3.3009 3.7875 -0.0252 10 7 5.3387 3.1082 -0.5799 11 6 5.7913 4.4855 -0.7906 12 6 6.2791 1.9959 -0.7378 13 6 7.7021 2.3125 -0.2434 14 7 8.1695 1.6150 -1.4600 15 6 9.3226 0.9642 -1.8091 16 1 9.4179 0.5235 -2.7906 17 6 10.3689 0.8708 -0.9017 18 7 10.2528 1.4082 0.2940 19 14 11.9416 -0.0176 -1.3779 20 1 12.8887 0.9474 -1.9921 21 1 12.5592 -0.6144 -0.1664 22 1 11.6273 -1.0919 -2.3537 23 6 6.8940 1.8994 -2.1458 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7539 1.9291 0.9325 30 1 1.6033 1.9823 -0.8403 31 1 3.8943 -0.2652 1.1389 32 1 5.2680 0.8634 1.0540 33 1 3.8824 2.5605 2.2889 34 1 2.6059 1.3331 2.4681 35 1 4.1915 1.0871 3.2385 36 1 6.2326 4.8678 0.1299 37 1 6.5360 4.5055 -1.5862 38 1 4.9419 5.1080 -1.0721 39 1 5.8851 1.0504 -0.3653 40 1 7.9359 3.3770 -0.2301 41 1 7.9677 1.8057 0.6843 42 1 10.9841 1.3433 0.9281 43 1 6.5156 1.0635 -2.7342 44 1 6.8900 2.8423 -2.6926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277676376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:14 Heat of formation + Delta-G solvation = 5.566041 kcal Electronic energy + Delta-G solvation = -21758.910024 eV Core-core repulsion = 18712.854890 eV Total energy + Delta-G solvation = -3046.055134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24940 -37.95582 -36.33329 -34.14397 -32.86868 -31.90229 -28.98191 -27.74131 -27.03423 -24.91527 -24.56486 -23.51586 -22.47535 -20.53298 -19.42344 -18.31179 -16.98401 -16.60397 -15.84928 -15.64016 -15.21135 -14.77850 -14.20342 -14.02098 -13.89641 -13.67615 -13.26336 -12.71968 -12.64527 -12.34105 -12.09239 -11.98494 -11.77356 -11.61491 -11.59431 -11.39713 -11.10165 -10.96243 -10.95706 -10.84021 -10.75761 -10.47352 -10.35554 -10.28460 -10.11018 -9.62777 -9.29068 -8.85985 -8.11833 -6.98147 -5.84935 -3.18222 2.93671 3.33110 3.36856 3.41895 3.42429 4.38434 4.63915 4.76923 4.90437 5.09033 5.13511 5.16076 5.21874 5.32342 5.39333 5.47833 5.54303 5.63210 5.68325 5.74505 5.77409 5.81980 5.88561 5.91965 5.93075 6.01303 6.06009 6.11899 6.18997 6.24752 6.28770 6.35098 6.38434 6.47441 6.51557 6.88370 7.10343 7.15609 7.43723 7.83392 7.88579 8.51346 8.95923 9.62341 10.48446 11.32110 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.004642 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.417896 B = 6030.642249 C = 6415.373166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.108 4.108 5 H 0.093 0.907 6 C -0.126 4.126 7 C -0.153 4.153 8 C 0.519 3.481 9 O -0.556 6.556 10 N -0.599 5.599 11 C 0.087 3.913 12 C 0.072 3.928 13 C 0.158 3.842 14 N -0.606 5.606 15 C -0.225 4.225 16 H 0.082 0.918 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.106 3.894 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.719 -1.194 0.655 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.129 4.129 5 H 0.111 0.889 6 C -0.163 4.163 7 C -0.210 4.210 8 C 0.308 3.692 9 O -0.435 6.435 10 N -0.330 5.330 11 C -0.056 4.056 12 C -0.032 4.032 13 C 0.032 3.968 14 N -0.333 5.333 15 C -0.353 4.353 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.021 4.021 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.764 -0.830 0.820 14.810 hybrid contribution 1.190 -0.324 -0.361 1.286 sum -13.573 -1.154 0.459 13.630 Atomic orbital electron populations 1.21758 0.96038 1.01267 1.01782 1.21588 0.95664 0.96927 1.02174 1.21462 0.92597 0.96407 1.03335 1.21388 0.97201 0.93702 1.00599 0.88876 1.21748 1.01494 0.99776 0.93295 1.21825 1.01007 1.00969 0.97179 1.20617 0.81518 0.91279 0.75830 1.90626 1.55694 1.46494 1.50655 1.48012 1.09534 1.07779 1.67714 1.21568 1.00216 0.82437 1.01388 1.24377 0.90099 0.89777 0.98972 1.22636 0.84974 0.95843 0.93378 1.45748 1.13203 1.62225 1.12110 1.18992 0.90281 1.27100 0.98891 0.90053 1.24787 0.98326 1.00845 0.96204 1.69805 1.32343 1.48735 1.05760 0.86109 0.83157 0.79140 0.77277 1.21567 1.21556 1.20535 1.22991 0.87131 0.98014 0.93988 0.92827 0.92851 0.92971 0.92018 0.91705 0.90781 0.91762 0.90790 0.90068 0.92554 0.92452 0.92652 0.92851 0.91130 0.91128 0.86271 0.94854 0.90442 0.93505 0.93476 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.15 0.37 -0.94 16 2 C -0.13 -1.22 5.55 -26.73 -0.15 -1.36 16 3 C -0.10 -1.19 3.65 -26.73 -0.10 -1.29 16 4 C -0.11 -1.41 1.67 -91.77 -0.15 -1.57 16 5 H 0.09 1.17 7.68 -51.93 -0.40 0.77 16 6 C -0.13 -1.57 4.88 -26.73 -0.13 -1.70 16 7 C -0.15 -1.89 9.14 37.16 0.34 -1.55 16 8 C 0.52 8.41 5.85 -10.98 -0.06 8.34 16 9 O -0.56 -10.35 15.57 5.56 0.09 -10.26 16 10 N -0.60 -9.90 3.09 -175.74 -0.54 -10.44 16 11 C 0.09 1.36 8.99 59.85 0.54 1.90 16 12 C 0.07 1.28 3.48 -70.14 -0.24 1.03 16 13 C 0.16 3.52 6.99 -2.84 -0.02 3.50 16 14 N -0.61 -14.83 3.70 -177.86 -0.66 -15.49 16 15 C -0.23 -6.09 10.70 -15.06 -0.16 -6.25 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 18 N -0.92 -26.38 11.39 55.49 0.63 -25.75 16 19 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.11 2.07 8.49 -2.97 -0.03 2.04 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 29 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 30 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 31 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 32 H 0.08 1.16 5.39 -51.93 -0.28 0.88 16 33 H 0.06 0.81 7.19 -51.93 -0.37 0.44 16 34 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16 38 H 0.07 1.07 7.35 -51.92 -0.38 0.69 16 39 H 0.12 2.00 4.33 -51.93 -0.22 1.78 16 40 H 0.03 0.77 6.78 -51.93 -0.35 0.41 16 41 H 0.08 1.92 7.17 -51.93 -0.37 1.55 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.04 0.70 6.91 -51.93 -0.36 0.34 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -30.26 336.59 -7.72 -37.98 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.39 Total: 0.46 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.11 Total: 1.94 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.57 Total: -51.68 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.26 -7.72 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277676376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.547 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds