Wall clock time and date at job start Mon Mar 30 2020 00:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.47004 * 2 1 4 4 C 1.52997 * 109.46876 * 185.15177 * 3 2 1 5 5 H 1.09004 * 109.47493 * 55.49711 * 4 3 2 6 6 C 1.53002 * 109.47111 * 295.49576 * 4 3 2 7 7 C 1.53002 * 109.47048 * 304.82764 * 6 4 3 8 8 C 1.50703 * 109.46928 * 175.49384 * 4 3 2 9 9 O 1.21276 * 120.00144 * 10.73468 * 8 4 3 10 10 N 1.34776 * 120.00098 * 190.72928 * 8 4 3 11 11 C 1.46497 * 120.00371 * 175.21562 * 10 8 4 12 12 C 1.46506 * 119.99874 * 355.21792 * 10 8 4 13 13 C 1.53939 * 113.74099 * 216.88846 * 12 10 8 14 14 N 1.47814 * 86.04122 * 222.08496 * 13 12 10 15 15 C 1.36930 * 134.45956 * 204.64608 * 14 13 12 16 16 H 1.08006 * 119.99801 * 179.86750 * 15 14 13 17 17 C 1.38809 * 119.99957 * 359.86847 * 15 14 13 18 18 N 1.31612 * 120.00058 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99661 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46941 * 90.00045 * 19 17 15 21 21 H 1.48500 * 109.46920 * 209.99647 * 19 17 15 22 22 H 1.48492 * 109.47398 * 329.99889 * 19 17 15 23 23 C 1.47584 * 91.04478 * 24.55032 * 14 13 12 24 24 H 1.09002 * 109.47477 * 300.00649 * 1 2 3 25 25 H 1.09004 * 109.47561 * 59.99914 * 1 2 3 26 26 H 1.09000 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47462 * 240.00132 * 2 1 3 28 28 H 1.09000 * 109.47338 * 119.99632 * 2 1 3 29 29 H 1.08997 * 109.46949 * 65.15358 * 3 2 1 30 30 H 1.09000 * 109.46715 * 305.14623 * 3 2 1 31 31 H 1.08991 * 109.47379 * 64.83362 * 6 4 3 32 32 H 1.08999 * 109.46716 * 184.83395 * 6 4 3 33 33 H 1.08998 * 109.47169 * 305.40400 * 7 6 4 34 34 H 1.09002 * 109.46860 * 65.40316 * 7 6 4 35 35 H 1.08999 * 109.46888 * 185.40081 * 7 6 4 36 36 H 1.09004 * 109.47030 * 94.86469 * 11 10 8 37 37 H 1.08993 * 109.47309 * 214.86928 * 11 10 8 38 38 H 1.09007 * 109.46829 * 334.87081 * 11 10 8 39 39 H 1.08997 * 112.94232 * 348.48664 * 12 10 8 40 40 H 1.08994 * 113.77136 * 336.35379 * 13 12 10 41 41 H 1.09001 * 113.76702 * 107.74935 * 13 12 10 42 42 H 0.97007 * 120.00057 * 180.02562 * 18 17 15 43 43 H 1.09006 * 113.77048 * 221.14957 * 23 14 13 44 44 H 1.09003 * 113.77035 * 89.76000 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5644 1.4445 -0.1295 5 1 3.8541 0.8885 -1.0212 6 6 4.1820 0.7855 1.1055 7 6 3.6793 1.4924 2.3659 8 6 4.0573 2.8643 -0.2408 9 8 3.3009 3.7875 -0.0252 10 7 5.3387 3.1082 -0.5799 11 6 5.7913 4.4855 -0.7906 12 6 6.2791 1.9959 -0.7378 13 6 7.7021 2.3125 -0.2434 14 7 8.1695 1.6150 -1.4600 15 6 9.3226 0.9642 -1.8091 16 1 9.4179 0.5235 -2.7906 17 6 10.3689 0.8708 -0.9017 18 7 10.2528 1.4082 0.2940 19 14 11.9416 -0.0176 -1.3779 20 1 12.8887 0.9474 -1.9921 21 1 12.5592 -0.6144 -0.1664 22 1 11.6273 -1.0919 -2.3537 23 6 6.8940 1.8994 -2.1458 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7539 1.9291 0.9325 30 1 1.6033 1.9823 -0.8403 31 1 3.8943 -0.2652 1.1389 32 1 5.2680 0.8634 1.0540 33 1 3.8824 2.5605 2.2889 34 1 2.6059 1.3331 2.4681 35 1 4.1915 1.0871 3.2385 36 1 6.2326 4.8678 0.1299 37 1 6.5360 4.5055 -1.5862 38 1 4.9419 5.1080 -1.0721 39 1 5.8851 1.0504 -0.3653 40 1 7.9359 3.3770 -0.2301 41 1 7.9677 1.8057 0.6843 42 1 10.9841 1.3433 0.9281 43 1 6.5156 1.0635 -2.7342 44 1 6.8900 2.8423 -2.6926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277676376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:13 Heat of formation + Delta-G solvation = -11.649754 kcal Electronic energy + Delta-G solvation = -21759.656557 eV Core-core repulsion = 18712.854890 eV Total energy + Delta-G solvation = -3046.801667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59497 -39.52161 -37.40684 -35.71003 -33.86646 -33.70559 -30.03111 -29.52449 -28.30259 -26.61033 -25.62015 -25.17896 -23.54213 -21.79979 -20.78434 -19.64541 -18.76940 -17.97215 -17.17233 -16.94810 -16.69271 -16.26448 -15.70096 -15.46202 -15.01301 -14.83939 -14.32378 -14.19616 -13.71511 -13.69422 -13.57592 -13.30418 -13.13956 -13.00374 -12.82520 -12.78476 -12.63353 -12.51588 -12.08056 -12.00182 -11.94716 -11.86693 -11.74491 -11.52093 -11.43977 -11.27247 -10.87170 -10.57497 -9.56568 -8.94033 -7.90827 -5.24884 1.48774 1.49610 1.58557 1.62614 2.02300 2.50243 3.27544 3.35915 3.55679 3.79114 3.82112 3.92857 4.11584 4.23437 4.32909 4.33765 4.40694 4.44544 4.50945 4.61443 4.69588 4.75204 4.78466 4.85004 4.86693 4.89771 4.96536 5.01865 5.11992 5.18836 5.20226 5.24492 5.28987 5.34704 5.44193 5.47586 5.48011 5.57733 5.61843 5.90006 6.46262 6.90743 7.18745 7.59948 8.52583 9.25937 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024940 B = 0.004642 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.417896 B = 6030.642249 C = 6415.373166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.105 4.105 5 H 0.106 0.894 6 C -0.122 4.122 7 C -0.150 4.150 8 C 0.518 3.482 9 O -0.580 6.580 10 N -0.601 5.601 11 C 0.087 3.913 12 C 0.106 3.894 13 C 0.156 3.844 14 N -0.633 5.633 15 C -0.234 4.234 16 H 0.087 0.913 17 C -0.061 4.061 18 N -0.952 5.952 19 Si 0.977 3.023 20 H -0.290 1.290 21 H -0.295 1.295 22 H -0.266 1.266 23 C 0.108 3.892 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.136 0.864 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.249 0.751 43 H 0.067 0.933 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -2.670 -0.154 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.132 4.132 4 C -0.126 4.126 5 H 0.124 0.876 6 C -0.160 4.160 7 C -0.207 4.207 8 C 0.308 3.692 9 O -0.460 6.460 10 N -0.332 5.332 11 C -0.056 4.056 12 C 0.001 3.999 13 C 0.029 3.971 14 N -0.360 5.360 15 C -0.362 4.362 16 H 0.105 0.895 17 C -0.255 4.255 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.190 1.190 23 C -0.018 4.018 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.154 0.846 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.949 -2.302 -0.017 16.114 hybrid contribution 1.490 0.210 -0.119 1.509 sum -14.459 -2.092 -0.136 14.610 Atomic orbital electron populations 1.21759 0.95338 1.02054 1.01711 1.21568 0.96271 0.95181 1.02890 1.21416 0.91460 0.97922 1.02407 1.21470 0.98122 0.91520 1.01455 0.87573 1.21735 1.00132 1.01189 0.92901 1.21798 1.02062 0.99239 0.97571 1.21198 0.80859 0.92467 0.74681 1.90616 1.56127 1.47711 1.51553 1.48015 1.09687 1.07655 1.67865 1.21577 1.00422 0.82314 1.01281 1.23899 0.88203 0.90532 0.97232 1.22522 0.88031 0.94609 0.91907 1.46052 1.13944 1.62318 1.13698 1.19388 0.91226 1.26626 0.98989 0.89486 1.25581 1.01385 1.02201 0.96309 1.69989 1.32846 1.50465 1.06708 0.85101 0.79327 0.78195 0.76832 1.21690 1.22122 1.19025 1.23136 0.84883 0.98938 0.94823 0.92885 0.93030 0.91750 0.91336 0.90898 0.91725 0.92746 0.88239 0.91952 0.95154 0.91049 0.91891 0.93182 0.91085 0.90541 0.84649 0.95985 0.93441 0.94220 0.91452 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.99 5.55 30.60 0.17 -1.82 16 3 C -0.09 -2.05 3.65 30.60 0.11 -1.94 16 4 C -0.10 -2.53 1.67 -11.54 -0.02 -2.55 16 5 H 0.11 2.33 7.68 -2.38 -0.02 2.31 16 6 C -0.12 -2.81 4.88 30.60 0.15 -2.66 16 7 C -0.15 -3.50 9.14 71.98 0.66 -2.84 16 8 C 0.52 16.22 5.85 87.66 0.51 16.73 16 9 O -0.58 -21.24 15.57 -3.02 -0.05 -21.28 16 10 N -0.60 -19.38 3.09 -828.30 -2.56 -21.94 16 11 C 0.09 2.70 8.99 127.77 1.15 3.85 16 12 C 0.11 3.67 3.48 46.74 0.16 3.83 16 13 C 0.16 7.05 6.99 86.44 0.60 7.65 16 14 N -0.63 -30.76 3.70 -716.63 -2.65 -33.42 16 15 C -0.23 -12.57 10.70 84.03 0.90 -11.68 16 16 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.38 5.50 84.86 0.47 -2.91 16 18 N -0.95 -55.65 11.39 21.65 0.25 -55.41 16 19 Si 0.98 44.25 29.55 68.60 2.03 46.28 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 C 0.11 4.05 8.49 86.48 0.73 4.78 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.09 6.92 -2.39 -0.02 1.08 16 29 H 0.06 1.53 6.18 -2.39 -0.01 1.51 16 30 H 0.05 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.10 1.82 6.91 -2.39 -0.02 1.80 16 32 H 0.06 1.69 5.39 -2.39 -0.01 1.68 16 33 H 0.03 0.85 7.19 -2.39 -0.02 0.84 16 34 H 0.07 1.46 6.57 -2.39 -0.02 1.44 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.57 8.07 -2.38 -0.02 1.56 16 37 H 0.07 2.19 6.58 -2.39 -0.02 2.17 16 38 H 0.08 2.29 7.35 -2.38 -0.02 2.27 16 39 H 0.14 4.32 4.33 -2.39 -0.01 4.31 16 40 H 0.02 1.05 6.78 -2.39 -0.02 1.03 16 41 H 0.05 2.43 7.17 -2.39 -0.02 2.41 16 42 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 43 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.04 1.61 6.91 -2.39 -0.02 1.59 16 Total: -1.00 -64.74 336.59 4.29 -60.45 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.97 Total: 16.40 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.31 Total: 8.91 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.97 Total: -110.76 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.28 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -64.74 4.29 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277676376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.803 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds