Wall clock time and date at job start Mon Mar 30 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 C 1.53001 * 109.47205 * 120.00101 * 2 1 3 5 5 C 1.50697 * 109.46943 * 64.99871 * 4 2 1 6 6 O 1.21282 * 119.99795 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99842 * 179.97438 * 5 4 2 8 8 C 1.46933 * 120.60531 * 5.16326 * 7 5 4 9 9 C 1.53190 * 108.77671 * 233.53322 * 8 7 5 10 10 C 1.53043 * 109.33847 * 305.41722 * 9 8 7 11 11 C 1.53044 * 109.54016 * 61.34532 * 10 9 8 12 12 C 1.46923 * 120.63290 * 185.14007 * 7 5 4 13 13 H 1.08993 * 109.59182 * 246.22277 * 12 7 5 14 14 C 1.53001 * 109.58696 * 6.65003 * 12 7 5 15 15 N 1.46498 * 109.46993 * 286.73666 * 14 12 7 16 16 C 1.36931 * 120.00197 * 185.40049 * 15 14 12 17 17 H 1.07998 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00276 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00046 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00439 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47213 * 59.99378 * 20 18 16 22 22 H 1.48491 * 109.47358 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46921 * 299.99990 * 20 18 16 24 24 H 1.09001 * 109.46927 * 300.00162 * 1 2 3 25 25 H 1.09001 * 109.47150 * 59.99405 * 1 2 3 26 26 H 1.08992 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47057 * 240.00608 * 2 1 3 28 28 H 1.09010 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47547 * 299.99828 * 3 2 1 30 30 H 1.08995 * 109.47304 * 60.00595 * 3 2 1 31 31 H 1.08998 * 109.47150 * 304.99554 * 4 2 1 32 32 H 1.08998 * 109.46442 * 185.00198 * 4 2 1 33 33 H 1.08996 * 109.56430 * 113.76077 * 8 7 5 34 34 H 1.09006 * 109.61927 * 353.33467 * 8 7 5 35 35 H 1.08993 * 109.50276 * 185.44199 * 9 8 7 36 36 H 1.09006 * 109.49349 * 65.37776 * 9 8 7 37 37 H 1.09002 * 109.46016 * 181.36378 * 10 9 8 38 38 H 1.08999 * 109.45559 * 301.32268 * 10 9 8 39 39 H 1.09000 * 109.49815 * 58.58478 * 11 10 9 40 40 H 1.08990 * 109.49661 * 178.65480 * 11 10 9 41 41 H 1.09008 * 109.47151 * 46.73506 * 14 12 7 42 42 H 1.08998 * 109.47285 * 166.73440 * 14 12 7 43 43 H 0.97003 * 119.99578 * 5.40443 * 15 14 12 44 44 H 0.96997 * 120.00636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 8 1.0117 -2.5902 0.2398 7 7 1.9854 -3.0087 2.1889 8 6 2.6495 -2.4973 3.3957 9 6 3.9374 -3.2944 3.6250 10 6 3.6072 -4.7880 3.6735 11 6 3.0020 -5.2221 2.3365 12 6 1.7030 -4.4473 2.0931 13 1 0.9651 -4.7258 2.8454 14 6 1.1655 -4.7728 0.6981 15 7 -0.2086 -4.2795 0.5768 16 6 -0.9376 -4.5537 -0.5494 17 1 -0.4995 -5.1332 -1.3485 18 6 -2.2394 -4.0858 -0.6645 19 7 -2.7733 -3.3791 0.3091 20 14 -3.2342 -4.4604 -2.2005 21 1 -3.3662 -5.9311 -2.3584 22 1 -4.5837 -3.8532 -2.0766 23 1 -2.5436 -3.8952 -3.3876 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2950 33 1 1.9885 -2.6162 4.2542 34 1 2.8914 -1.4430 3.2615 35 1 4.3899 -2.9910 4.5690 36 1 4.6343 -3.1022 2.8092 37 1 4.5188 -5.3556 3.8608 38 1 2.8918 -4.9759 4.4741 39 1 3.7072 -5.0116 1.5325 40 1 2.7892 -6.2907 2.3634 41 1 1.7917 -4.2923 -0.0538 42 1 1.1789 -5.8521 0.5462 43 1 -0.6019 -3.7586 1.2944 44 1 -3.6830 -3.0525 0.2289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280429949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:00 Heat of formation + Delta-G solvation = -5.089383 kcal Electronic energy + Delta-G solvation = -22510.479042 eV Core-core repulsion = 19463.961854 eV Total energy + Delta-G solvation = -3046.517188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.07269 -37.23739 -35.32124 -34.07823 -32.51895 -31.86543 -29.71025 -27.85375 -26.60929 -25.79136 -24.23749 -22.65604 -21.59525 -20.49840 -19.72137 -18.32231 -17.00478 -16.18228 -15.48151 -15.29142 -14.49704 -14.42170 -14.22928 -13.79188 -13.55542 -13.34529 -13.26323 -12.90601 -12.75349 -12.24213 -12.09192 -11.85937 -11.68274 -11.58393 -11.42242 -10.98984 -10.87686 -10.67180 -10.63508 -10.56327 -10.45120 -10.33909 -10.28213 -10.20771 -9.81288 -9.42322 -8.59003 -8.21597 -7.88133 -6.41691 -5.46732 -2.65866 3.47501 3.51347 3.60479 3.63358 3.64827 4.79560 4.81096 4.90565 4.95027 5.11853 5.17224 5.24712 5.28602 5.45462 5.52200 5.63449 5.70383 5.76227 5.83484 5.85709 5.86697 5.90697 5.95439 6.01919 6.08772 6.12566 6.15892 6.21963 6.27604 6.37343 6.41011 6.61455 6.62542 6.77317 6.80819 7.00891 7.33637 7.37285 7.93604 8.09735 8.71446 9.11413 9.83055 10.44870 10.79985 11.77146 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.007815 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.677951 B = 3581.973075 C = 5057.544581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.130 4.130 5 C 0.471 3.529 6 O -0.438 6.438 7 N -0.618 5.618 8 C 0.112 3.888 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.127 4.127 12 C 0.142 3.858 13 H 0.066 0.934 14 C 0.164 3.836 15 N -0.694 5.694 16 C -0.204 4.204 17 H 0.062 0.938 18 C -0.021 4.021 19 N -0.938 5.938 20 Si 0.898 3.102 21 H -0.291 1.291 22 H -0.295 1.295 23 H -0.291 1.291 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.013 0.987 43 H 0.380 0.620 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.363 4.672 8.128 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.170 4.170 5 C 0.256 3.744 6 O -0.306 6.306 7 N -0.357 5.357 8 C -0.012 4.012 9 C -0.172 4.172 10 C -0.155 4.155 11 C -0.166 4.166 12 C 0.038 3.962 13 H 0.084 0.916 14 C 0.036 3.964 15 N -0.337 5.337 16 C -0.336 4.336 17 H 0.080 0.920 18 C -0.215 4.215 19 N -0.589 5.589 20 Si 0.731 3.269 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.218 1.218 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.214 0.786 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.931 4.393 7.383 17.226 hybrid contribution -0.629 0.157 -0.423 0.774 sum 14.302 4.550 6.960 16.543 Atomic orbital electron populations 1.21970 0.93779 1.05526 0.99777 1.20837 0.97328 0.94321 0.97206 1.21862 1.00101 0.96732 1.01528 1.21748 1.01112 0.94012 1.00155 1.20650 0.81377 0.87790 0.84569 1.91196 1.32661 1.75110 1.31621 1.47989 1.61917 1.07438 1.18349 1.21569 0.93345 0.98046 0.88246 1.21915 0.97682 0.95962 1.01666 1.21493 1.00494 0.95629 0.97886 1.21907 0.97448 0.99943 0.97273 1.21438 0.95104 0.79520 1.00106 0.91616 1.20799 0.88971 0.94881 0.91715 1.42160 1.08351 1.62883 1.20311 1.19089 0.93676 1.25263 0.95621 0.92038 1.24548 0.97472 1.01768 0.97752 1.69640 1.14622 1.42330 1.32327 0.86377 0.79544 0.77362 0.83640 1.21843 1.22078 1.21787 0.94246 0.93879 0.88309 0.90806 0.93338 0.92786 0.93054 0.90285 0.90491 0.92110 0.90252 0.91399 0.91750 0.92177 0.91931 0.91742 0.91043 0.94884 0.96925 0.78631 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.93 37.16 0.33 -2.55 16 2 C -0.08 -1.22 2.57 -90.62 -0.23 -1.45 16 3 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 4 C -0.13 -1.87 3.53 -27.88 -0.10 -1.96 16 5 C 0.47 8.60 7.03 -10.99 -0.08 8.52 16 6 O -0.44 -10.14 7.70 5.56 0.04 -10.10 16 7 N -0.62 -9.82 2.97 -165.22 -0.49 -10.31 16 8 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 9 C -0.13 -1.30 6.08 -26.61 -0.16 -1.46 16 10 C -0.12 -1.23 5.88 -26.69 -0.16 -1.39 16 11 C -0.13 -1.67 5.34 -26.61 -0.14 -1.81 16 12 C 0.14 2.42 2.91 -67.60 -0.20 2.22 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.16 3.58 4.89 -4.04 -0.02 3.56 16 15 N -0.69 -18.58 3.20 -59.91 -0.19 -18.77 16 16 C -0.20 -6.08 9.74 -15.06 -0.15 -6.22 16 17 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 19 N -0.94 -29.64 13.06 55.49 0.72 -28.92 16 20 Si 0.90 23.92 29.55 -169.99 -5.02 18.90 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 2.39 5.95 -51.93 -0.31 2.08 16 27 H 0.07 1.28 7.95 -51.93 -0.41 0.86 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 32 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.79 5.93 -51.93 -0.31 0.48 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.78 6.36 -51.92 -0.33 0.45 16 42 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 43 H 0.38 10.86 7.22 -40.82 -0.29 10.56 16 44 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -33.16 334.86 -8.50 -41.66 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.93 Total: 5.93 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.68 Total: -3.43 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.04 Total: -58.00 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.04 Total: -10.10 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.16 -8.50 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280429949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.575 kcal (2) G-P(sol) polarization free energy of solvation -33.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds