Wall clock time and date at job start Mon Mar 30 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 C 1.53001 * 109.47205 * 120.00101 * 2 1 3 5 5 C 1.50697 * 109.46943 * 64.99871 * 4 2 1 6 6 O 1.21282 * 119.99795 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99842 * 179.97438 * 5 4 2 8 8 C 1.46933 * 120.60531 * 5.16326 * 7 5 4 9 9 C 1.53190 * 108.77671 * 233.53322 * 8 7 5 10 10 C 1.53043 * 109.33847 * 305.41722 * 9 8 7 11 11 C 1.53044 * 109.54016 * 61.34532 * 10 9 8 12 12 C 1.46923 * 120.63290 * 185.14007 * 7 5 4 13 13 H 1.08993 * 109.59182 * 246.22277 * 12 7 5 14 14 C 1.53001 * 109.58696 * 6.65003 * 12 7 5 15 15 N 1.46498 * 109.46993 * 286.73666 * 14 12 7 16 16 C 1.36931 * 120.00197 * 185.40049 * 15 14 12 17 17 H 1.07998 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00276 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00046 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00439 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47213 * 59.99378 * 20 18 16 22 22 H 1.48491 * 109.47358 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46921 * 299.99990 * 20 18 16 24 24 H 1.09001 * 109.46927 * 300.00162 * 1 2 3 25 25 H 1.09001 * 109.47150 * 59.99405 * 1 2 3 26 26 H 1.08992 * 109.47031 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47057 * 240.00608 * 2 1 3 28 28 H 1.09010 * 109.46935 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47547 * 299.99828 * 3 2 1 30 30 H 1.08995 * 109.47304 * 60.00595 * 3 2 1 31 31 H 1.08998 * 109.47150 * 304.99554 * 4 2 1 32 32 H 1.08998 * 109.46442 * 185.00198 * 4 2 1 33 33 H 1.08996 * 109.56430 * 113.76077 * 8 7 5 34 34 H 1.09006 * 109.61927 * 353.33467 * 8 7 5 35 35 H 1.08993 * 109.50276 * 185.44199 * 9 8 7 36 36 H 1.09006 * 109.49349 * 65.37776 * 9 8 7 37 37 H 1.09002 * 109.46016 * 181.36378 * 10 9 8 38 38 H 1.08999 * 109.45559 * 301.32268 * 10 9 8 39 39 H 1.09000 * 109.49815 * 58.58478 * 11 10 9 40 40 H 1.08990 * 109.49661 * 178.65480 * 11 10 9 41 41 H 1.09008 * 109.47151 * 46.73506 * 14 12 7 42 42 H 1.08998 * 109.47285 * 166.73440 * 14 12 7 43 43 H 0.97003 * 119.99578 * 5.40443 * 15 14 12 44 44 H 0.96997 * 120.00636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 8 1.0117 -2.5902 0.2398 7 7 1.9854 -3.0087 2.1889 8 6 2.6495 -2.4973 3.3957 9 6 3.9374 -3.2944 3.6250 10 6 3.6072 -4.7880 3.6735 11 6 3.0020 -5.2221 2.3365 12 6 1.7030 -4.4473 2.0931 13 1 0.9651 -4.7258 2.8454 14 6 1.1655 -4.7728 0.6981 15 7 -0.2086 -4.2795 0.5768 16 6 -0.9376 -4.5537 -0.5494 17 1 -0.4995 -5.1332 -1.3485 18 6 -2.2394 -4.0858 -0.6645 19 7 -2.7733 -3.3791 0.3091 20 14 -3.2342 -4.4604 -2.2005 21 1 -3.3662 -5.9311 -2.3584 22 1 -4.5837 -3.8532 -2.0766 23 1 -2.5436 -3.8952 -3.3876 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2950 33 1 1.9885 -2.6162 4.2542 34 1 2.8914 -1.4430 3.2615 35 1 4.3899 -2.9910 4.5690 36 1 4.6343 -3.1022 2.8092 37 1 4.5188 -5.3556 3.8608 38 1 2.8918 -4.9759 4.4741 39 1 3.7072 -5.0116 1.5325 40 1 2.7892 -6.2907 2.3634 41 1 1.7917 -4.2923 -0.0538 42 1 1.1789 -5.8521 0.5462 43 1 -0.6019 -3.7586 1.2944 44 1 -3.6830 -3.0525 0.2289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280429949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:00 Heat of formation + Delta-G solvation = -25.964309 kcal Electronic energy + Delta-G solvation = -22511.384247 eV Core-core repulsion = 19463.961854 eV Total energy + Delta-G solvation = -3047.422393 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41162 -38.45846 -36.77738 -35.84821 -33.78246 -33.52913 -31.46572 -29.06100 -27.89233 -27.41824 -25.64493 -24.28837 -23.07100 -21.66244 -20.94711 -19.68015 -19.01239 -17.59881 -16.79327 -16.73251 -16.41882 -15.59076 -15.31766 -15.28381 -14.97381 -14.88327 -14.50263 -14.46114 -14.04194 -13.82310 -13.46503 -13.08839 -13.07600 -12.90696 -12.77161 -12.69453 -12.61180 -12.16298 -12.05157 -11.84414 -11.82882 -11.71416 -11.62503 -11.55734 -11.38920 -11.28346 -10.80744 -9.70752 -9.27189 -8.58111 -7.80035 -4.97548 1.42012 1.46275 1.51534 2.12136 2.28082 2.62828 3.51838 3.72230 3.87550 3.91964 4.01590 4.06705 4.11332 4.18981 4.38964 4.40983 4.49342 4.55958 4.68059 4.71566 4.76453 4.77616 4.83245 4.86617 4.89832 5.03719 5.06630 5.09956 5.16859 5.17086 5.19581 5.27309 5.34363 5.35293 5.51621 5.52341 5.56082 5.71886 5.95205 6.40149 6.80992 7.46967 7.75590 8.28917 8.52458 9.44114 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.007815 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.677951 B = 3581.973075 C = 5057.544581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.120 4.120 5 C 0.461 3.539 6 O -0.501 6.501 7 N -0.618 5.618 8 C 0.103 3.897 9 C -0.127 4.127 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.147 3.853 13 H 0.052 0.948 14 C 0.167 3.833 15 N -0.698 5.698 16 C -0.209 4.209 17 H 0.057 0.943 18 C -0.081 4.081 19 N -0.969 5.969 20 Si 0.961 3.039 21 H -0.280 1.280 22 H -0.295 1.295 23 H -0.290 1.290 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.016 0.984 42 H 0.009 0.991 43 H 0.367 0.633 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 5.633 9.702 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 C -0.192 4.192 4 C -0.159 4.159 5 C 0.248 3.752 6 O -0.373 6.373 7 N -0.355 5.355 8 C -0.019 4.019 9 C -0.165 4.165 10 C -0.151 4.151 11 C -0.157 4.157 12 C 0.043 3.957 13 H 0.070 0.930 14 C 0.041 3.959 15 N -0.339 5.339 16 C -0.342 4.342 17 H 0.075 0.925 18 C -0.272 4.272 19 N -0.622 5.622 20 Si 0.792 3.208 21 H -0.206 1.206 22 H -0.221 1.221 23 H -0.217 1.217 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.199 0.801 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 17.574 5.332 8.995 20.449 hybrid contribution -1.365 -0.148 -0.892 1.637 sum 16.209 5.184 8.103 18.848 Atomic orbital electron populations 1.21838 0.96668 1.01722 1.00121 1.20778 0.94698 0.96890 0.96966 1.21772 1.01539 0.93677 1.02239 1.21732 1.03307 0.90794 1.00101 1.21478 0.80227 0.89589 0.83891 1.91174 1.35574 1.76395 1.34172 1.48141 1.61343 1.06627 1.19370 1.21937 0.94088 0.99687 0.86181 1.21895 0.96437 0.94775 1.03365 1.21499 1.01262 0.96689 0.95674 1.21843 0.95081 0.99563 0.99231 1.21256 0.96807 0.81384 0.96276 0.93041 1.20825 0.86598 0.93887 0.94622 1.42214 1.09975 1.62690 1.18975 1.19396 0.94135 1.24354 0.96312 0.92504 1.25265 0.98654 1.02509 1.00763 1.69806 1.14463 1.43810 1.34096 0.85374 0.77747 0.77558 0.80139 1.20616 1.22140 1.21712 0.93144 0.94228 0.94044 0.93395 0.90910 0.92903 0.91594 0.88329 0.86834 0.91704 0.87935 0.88213 0.91641 0.89861 0.91744 0.92020 0.90630 0.96631 0.97352 0.80103 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 8.93 71.98 0.64 -5.03 16 2 C -0.07 -2.27 2.57 -10.79 -0.03 -2.30 16 3 C -0.14 -2.90 9.19 71.98 0.66 -2.23 16 4 C -0.12 -3.19 3.53 29.85 0.11 -3.08 16 5 C 0.46 16.92 7.03 87.66 0.62 17.53 16 6 O -0.50 -24.42 7.70 -3.04 -0.02 -24.44 16 7 N -0.62 -19.09 2.97 -795.02 -2.36 -21.45 16 8 C 0.10 2.05 6.35 86.36 0.55 2.60 16 9 C -0.13 -1.91 6.08 30.67 0.19 -1.73 16 10 C -0.11 -1.99 5.88 30.62 0.18 -1.81 16 11 C -0.12 -2.94 5.34 30.68 0.16 -2.78 16 12 C 0.15 5.04 2.91 44.98 0.13 5.17 16 13 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 14 C 0.17 7.63 4.89 86.38 0.42 8.05 16 15 N -0.70 -39.31 3.20 -343.45 -1.10 -40.41 16 16 C -0.21 -12.99 9.74 84.03 0.82 -12.17 16 17 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 18 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 19 N -0.97 -63.78 13.06 21.65 0.28 -63.50 16 20 Si 0.96 50.89 29.55 68.60 2.03 52.91 16 21 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 23 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.04 2.12 5.95 -2.39 -0.01 2.10 16 27 H 0.05 1.70 7.95 -2.39 -0.02 1.68 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.10 2.29 7.73 -2.39 -0.02 2.27 16 32 H 0.11 2.23 7.90 -2.39 -0.02 2.21 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.58 5.93 -2.38 -0.01 1.56 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.02 0.79 6.36 -2.38 -0.02 0.77 16 42 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 43 H 0.37 22.17 7.22 -92.71 -0.67 21.50 16 44 H 0.24 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.77 334.86 4.03 -73.75 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.29 Total: 25.53 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.92 Total: -2.39 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -3.18 Total: -125.36 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.02 Total: -24.44 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.03 Total: 52.91 kcal Total: -77.77 4.03 -73.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280429949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.781 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds