Wall clock time and date at job start Mon Mar 30 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46612 * 2 1 4 4 C 1.53002 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47279 * 304.99965 * 4 3 2 6 6 C 1.52991 * 109.47157 * 65.00454 * 4 3 2 7 7 C 1.50711 * 109.46742 * 185.00269 * 4 3 2 8 8 O 1.21270 * 120.00254 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99583 * 180.02562 * 7 4 3 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 4 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.36937 * 120.00198 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99752 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00247 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47535 * 89.99455 * 19 17 15 21 21 H 1.48501 * 109.47316 * 209.99801 * 19 17 15 22 22 H 1.48501 * 109.47022 * 329.99657 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 24 24 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47536 * 300.00019 * 1 2 3 26 26 H 1.09001 * 109.47324 * 60.00514 * 1 2 3 27 27 H 1.08998 * 109.47224 * 240.00404 * 2 1 3 28 28 H 1.09000 * 109.46972 * 119.99899 * 2 1 3 29 29 H 1.09000 * 109.47185 * 59.99767 * 3 2 1 30 30 H 1.09000 * 109.47370 * 299.99656 * 3 2 1 31 31 H 1.09002 * 109.46965 * 299.99650 * 6 4 3 32 32 H 1.08997 * 109.47425 * 59.99601 * 6 4 3 33 33 H 1.09003 * 109.47291 * 179.97438 * 6 4 3 34 34 H 0.96995 * 120.00200 * 359.97438 * 9 7 4 35 35 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 36 36 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 37 37 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 38 38 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 39 39 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 40 40 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 41 41 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 42 42 H 0.97001 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61695 * 25.34675 * 23 10 9 44 44 H 1.08996 * 113.61580 * 156.16953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8329 -1.3064 7 6 4.0722 2.8581 0.1246 8 8 3.2840 3.7764 0.2040 9 7 5.3973 3.1035 0.1460 10 6 5.8854 4.4795 0.2659 11 6 6.4537 4.8127 1.6555 12 6 7.8143 4.3216 1.1283 13 6 8.9964 5.1761 1.5899 14 7 9.4784 4.6851 2.8832 15 6 10.5380 5.2984 3.4968 16 1 11.0186 6.1438 3.0270 17 6 10.9942 4.8335 4.7226 18 7 12.0130 5.4226 5.3120 19 14 10.1634 3.3709 5.5349 20 1 10.8255 2.1172 5.0932 21 1 10.2737 3.4955 7.0105 22 1 8.7304 3.3371 5.1467 23 6 7.3094 4.6777 -0.2800 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7172 -0.1909 -1.3960 32 1 3.7175 1.4222 -2.1484 33 1 5.1705 0.8333 -1.3061 34 1 6.0276 2.3691 0.0821 35 1 5.1706 5.2158 -0.1015 36 1 6.4350 5.8767 1.8912 37 1 6.0447 4.1940 2.4543 38 1 7.9803 3.2544 1.2758 39 1 9.7992 5.1127 0.8552 40 1 8.6775 6.2134 1.6909 41 1 9.0470 3.9256 3.3051 42 1 12.3321 5.0975 6.1684 43 1 7.5903 3.9501 -1.0414 44 1 7.5247 5.7044 -0.5757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281991216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:41 Heat of formation + Delta-G solvation = -30.976161 kcal Electronic energy + Delta-G solvation = -20406.013009 eV Core-core repulsion = 17358.373286 eV Total energy + Delta-G solvation = -3047.639723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45243 -38.69269 -36.17369 -34.71153 -33.37784 -32.03136 -31.06596 -27.30420 -26.93206 -25.60478 -24.55356 -22.98359 -21.53473 -21.31925 -20.05327 -19.22780 -17.57493 -17.13567 -16.12035 -15.92469 -15.12072 -14.91035 -14.49037 -14.33927 -14.21621 -13.93357 -13.59898 -13.26725 -12.85970 -12.61148 -12.60292 -12.49977 -12.33575 -12.18736 -11.78482 -11.57489 -11.39823 -11.26429 -11.15220 -10.90052 -10.82951 -10.63712 -10.24722 -10.17618 -9.92553 -9.79183 -9.57285 -9.06095 -8.86392 -7.20876 -5.76003 -3.10909 2.52160 3.01537 3.37236 3.39868 3.45075 4.38826 4.41306 4.56089 4.59477 4.60257 4.68446 4.83271 4.91956 4.95941 5.01447 5.02101 5.17348 5.32759 5.46129 5.47498 5.54570 5.56166 5.62019 5.66331 5.70081 5.73769 5.83991 5.84759 5.85830 5.96130 5.99554 6.08301 6.11898 6.15122 6.27457 6.56923 6.69160 6.83017 7.40108 8.00924 8.12517 8.43457 9.22939 9.95479 10.15750 11.42623 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003387 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.249634 B = 8264.531928 C = 8920.580536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.097 0.903 6 C -0.145 4.145 7 C 0.518 3.482 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.115 3.885 11 C -0.141 4.141 12 C -0.118 4.118 13 C 0.167 3.833 14 N -0.756 5.756 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.136 4.136 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.400 0.600 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.360 0.640 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.653 -11.359 -14.862 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.203 4.203 7 C 0.304 3.696 8 O -0.417 6.417 9 N -0.361 5.361 10 C 0.010 3.990 11 C -0.180 4.180 12 C -0.137 4.137 13 C 0.039 3.961 14 N -0.401 5.401 15 C -0.373 4.373 16 H 0.107 0.893 17 C -0.193 4.193 18 N -0.584 5.584 19 Si 0.716 3.284 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.174 4.174 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.235 0.765 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.193 0.807 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.036 -10.518 -14.766 27.020 hybrid contribution -0.022 -1.382 0.813 1.604 sum -20.057 -11.901 -13.953 27.177 Atomic orbital electron populations 1.21763 0.95751 1.01484 1.02010 1.21606 0.96058 0.96642 1.02073 1.21432 0.92165 0.96654 1.03589 1.21363 0.97977 0.93436 1.00618 0.88477 1.21829 1.01165 1.01430 0.95849 1.20685 0.82132 0.91344 0.75393 1.90690 1.55285 1.46458 1.49303 1.45738 1.07006 1.08847 1.74506 1.21932 0.95639 0.83677 0.97775 1.23474 0.95923 1.02325 0.96262 1.22840 0.95378 1.00383 0.95108 1.20618 0.92536 0.95178 0.87721 1.42705 1.38569 1.37879 1.20944 1.19084 1.05363 1.11564 1.01276 0.89262 1.24684 0.98085 0.99139 0.97434 1.69707 1.27707 1.42966 1.17977 0.86524 0.79234 0.83615 0.79034 1.21145 1.21739 1.20370 1.23281 0.94142 1.02926 0.97068 0.92818 0.92652 0.92715 0.91752 0.91987 0.91069 0.91303 0.91161 0.92041 0.92131 0.76514 0.88340 0.88917 0.91559 0.89626 0.95520 0.95386 0.80750 0.93093 0.91182 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.84 5.69 -26.73 -0.15 -0.99 16 3 C -0.10 -0.86 4.03 -26.73 -0.11 -0.97 16 4 C -0.11 -0.94 2.72 -91.77 -0.25 -1.19 16 5 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.15 -0.92 8.84 37.15 0.33 -0.59 16 7 C 0.52 6.08 7.15 -10.98 -0.08 6.00 16 8 O -0.54 -8.48 15.54 5.57 0.09 -8.39 16 9 N -0.71 -7.53 5.16 -53.01 -0.27 -7.80 16 10 C 0.12 1.39 4.29 -67.12 -0.29 1.10 16 11 C -0.14 -2.00 7.45 -25.82 -0.19 -2.19 16 12 C -0.12 -1.70 3.64 -89.71 -0.33 -2.03 16 13 C 0.17 3.16 6.10 -4.05 -0.02 3.14 16 14 N -0.76 -18.08 5.41 -59.91 -0.32 -18.41 16 15 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 16 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 17 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 18 N -0.94 -29.71 13.97 55.49 0.78 -28.94 16 19 Si 0.89 22.32 27.74 -169.99 -4.71 17.60 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 23 C -0.14 -1.53 7.38 -25.92 -0.19 -1.72 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.72 7.96 -51.93 -0.41 0.31 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.36 6.57 -51.93 -0.34 0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.34 7.56 -51.93 -0.39 -0.05 16 34 H 0.40 3.38 8.12 -40.82 -0.33 3.05 16 35 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 36 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.36 8.41 5.53 -40.82 -0.23 8.18 16 42 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -33.68 351.32 -8.24 -41.92 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.91 Total: 5.96 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.17 Total: -7.23 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.18 Total: -55.15 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.68 -8.24 -41.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281991216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.942 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds