Wall clock time and date at job start Mon Mar 30 2020 00:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46612 * 2 1 4 4 C 1.53002 * 109.46637 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47279 * 304.99965 * 4 3 2 6 6 C 1.52991 * 109.47157 * 65.00454 * 4 3 2 7 7 C 1.50711 * 109.46742 * 185.00269 * 4 3 2 8 8 O 1.21270 * 120.00254 * 359.97438 * 7 4 3 9 9 N 1.34780 * 119.99583 * 180.02562 * 7 4 3 10 10 C 1.46497 * 119.99653 * 179.97438 * 9 7 4 11 11 C 1.53786 * 113.61643 * 105.85894 * 10 9 7 12 12 C 1.53962 * 87.01719 * 89.22773 * 11 10 9 13 13 C 1.52994 * 113.66220 * 139.93548 * 12 11 10 14 14 N 1.46498 * 109.47402 * 87.44478 * 13 12 11 15 15 C 1.36937 * 120.00198 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99949 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99752 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00247 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47535 * 89.99455 * 19 17 15 21 21 H 1.48501 * 109.47316 * 209.99801 * 19 17 15 22 22 H 1.48501 * 109.47022 * 329.99657 * 19 17 15 23 23 C 1.53781 * 113.61305 * 203.46742 * 10 9 7 24 24 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47536 * 300.00019 * 1 2 3 26 26 H 1.09001 * 109.47324 * 60.00514 * 1 2 3 27 27 H 1.08998 * 109.47224 * 240.00404 * 2 1 3 28 28 H 1.09000 * 109.46972 * 119.99899 * 2 1 3 29 29 H 1.09000 * 109.47185 * 59.99767 * 3 2 1 30 30 H 1.09000 * 109.47370 * 299.99656 * 3 2 1 31 31 H 1.09002 * 109.46965 * 299.99650 * 6 4 3 32 32 H 1.08997 * 109.47425 * 59.99601 * 6 4 3 33 33 H 1.09003 * 109.47291 * 179.97438 * 6 4 3 34 34 H 0.96995 * 120.00200 * 359.97438 * 9 7 4 35 35 H 1.09002 * 112.84935 * 334.66222 * 10 9 7 36 36 H 1.08993 * 113.61491 * 203.74894 * 11 10 9 37 37 H 1.09000 * 113.61138 * 334.65232 * 11 10 9 38 38 H 1.09002 * 113.61454 * 270.79954 * 12 11 10 39 39 H 1.09005 * 109.46709 * 207.43538 * 13 12 11 40 40 H 1.08998 * 109.47556 * 327.43829 * 13 12 11 41 41 H 0.97001 * 120.00130 * 359.97438 * 14 13 12 42 42 H 0.97001 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.09001 * 113.61695 * 25.34675 * 23 10 9 44 44 H 1.08996 * 113.61580 * 156.16953 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8533 0.8427 6 6 4.0805 0.8329 -1.3064 7 6 4.0722 2.8581 0.1246 8 8 3.2840 3.7764 0.2040 9 7 5.3973 3.1035 0.1460 10 6 5.8854 4.4795 0.2659 11 6 6.4537 4.8127 1.6555 12 6 7.8143 4.3216 1.1283 13 6 8.9964 5.1761 1.5899 14 7 9.4784 4.6851 2.8832 15 6 10.5380 5.2984 3.4968 16 1 11.0186 6.1438 3.0270 17 6 10.9942 4.8335 4.7226 18 7 12.0130 5.4226 5.3120 19 14 10.1634 3.3709 5.5349 20 1 10.8255 2.1172 5.0932 21 1 10.2737 3.4955 7.0105 22 1 8.7304 3.3371 5.1467 23 6 7.3094 4.6777 -0.2800 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.7172 -0.1909 -1.3960 32 1 3.7175 1.4222 -2.1484 33 1 5.1705 0.8333 -1.3061 34 1 6.0276 2.3691 0.0821 35 1 5.1706 5.2158 -0.1015 36 1 6.4350 5.8767 1.8912 37 1 6.0447 4.1940 2.4543 38 1 7.9803 3.2544 1.2758 39 1 9.7992 5.1127 0.8552 40 1 8.6775 6.2134 1.6909 41 1 9.0470 3.9256 3.3051 42 1 12.3321 5.0975 6.1684 43 1 7.5903 3.9501 -1.0414 44 1 7.5247 5.7044 -0.5757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281991216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:40 Heat of formation + Delta-G solvation = -53.332382 kcal Electronic energy + Delta-G solvation = -20406.982448 eV Core-core repulsion = 17358.373286 eV Total energy + Delta-G solvation = -3048.609162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41228 -39.73401 -36.90966 -36.45665 -34.53159 -33.32212 -32.46910 -28.87779 -27.49754 -26.65096 -25.56245 -24.44852 -22.94893 -22.17856 -20.81866 -20.46774 -19.47938 -18.02494 -17.09606 -16.67545 -16.62064 -16.05692 -15.90437 -15.60861 -15.11612 -14.91257 -14.86490 -14.51566 -14.00067 -13.92060 -13.51905 -13.47570 -13.35778 -13.13409 -12.99341 -12.75434 -12.69700 -12.19112 -12.13942 -11.88670 -11.85318 -11.73950 -11.71125 -11.42827 -11.39776 -11.19573 -10.90559 -10.71789 -10.02497 -9.28571 -8.03745 -5.36825 1.36284 1.40589 1.48037 1.62530 2.16696 2.47690 3.26899 3.46638 3.57227 3.68218 3.81111 3.85825 3.91488 3.99295 4.10407 4.29930 4.37514 4.40625 4.52830 4.62756 4.72517 4.80926 4.83811 4.88857 4.89492 4.91380 4.96568 4.98441 5.03437 5.11131 5.13611 5.24030 5.25618 5.30601 5.35412 5.44438 5.51181 5.67460 5.75718 6.20756 6.56828 7.07723 7.26477 7.84895 8.03931 9.18035 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.003387 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.249634 B = 8264.531928 C = 8920.580536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.106 4.106 5 H 0.114 0.886 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.700 5.700 10 C 0.123 3.877 11 C -0.147 4.147 12 C -0.113 4.113 13 C 0.162 3.838 14 N -0.758 5.758 15 C -0.236 4.236 16 H 0.054 0.946 17 C -0.068 4.068 18 N -0.985 5.985 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.254 1.254 23 C -0.116 4.116 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.097 0.903 39 H 0.027 0.973 40 H 0.021 0.979 41 H 0.366 0.634 42 H 0.258 0.742 43 H 0.095 0.905 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.805 -14.119 -16.082 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.127 4.127 5 H 0.132 0.868 6 C -0.199 4.199 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.352 5.352 10 C 0.017 3.983 11 C -0.186 4.186 12 C -0.131 4.131 13 C 0.036 3.964 14 N -0.403 5.403 15 C -0.367 4.367 16 H 0.072 0.928 17 C -0.259 4.259 18 N -0.636 5.636 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.178 1.178 23 C -0.155 4.155 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.045 0.955 40 H 0.039 0.961 41 H 0.199 0.801 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.201 -13.305 -16.039 29.728 hybrid contribution 0.354 -0.406 1.142 1.263 sum -20.846 -13.711 -14.897 29.060 Atomic orbital electron populations 1.21787 0.95844 1.02065 1.01564 1.21582 0.95990 0.95179 1.03067 1.21394 0.92664 0.97739 1.01875 1.21400 0.97503 0.91325 1.02521 0.86791 1.21839 1.01967 1.02010 0.94068 1.21362 0.81982 0.92341 0.74184 1.90673 1.56429 1.48140 1.51423 1.45672 1.07092 1.08676 1.73724 1.21740 0.95870 0.84408 0.96256 1.23493 0.96186 1.01669 0.97207 1.22782 0.93060 1.00017 0.97290 1.20817 0.94252 0.95745 0.85604 1.42727 1.37429 1.37793 1.22397 1.19077 1.06019 1.10395 1.01237 0.92754 1.25572 0.99140 1.02834 0.98377 1.69898 1.29890 1.45265 1.18563 0.85339 0.79297 0.79563 0.77155 1.19960 1.22353 1.17833 1.23200 0.92495 1.04061 0.95706 0.91684 0.93443 0.92921 0.90278 0.91328 0.93351 0.92573 0.89365 0.92828 0.90837 0.74850 0.89379 0.89853 0.92568 0.88523 0.95475 0.96062 0.80133 0.93331 0.88674 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.34 5.69 30.60 0.17 -1.17 16 3 C -0.10 -1.60 4.03 30.59 0.12 -1.47 16 4 C -0.11 -1.53 2.72 -11.54 -0.03 -1.56 16 5 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 6 C -0.14 -1.34 8.84 71.98 0.64 -0.70 16 7 C 0.51 11.28 7.15 87.66 0.63 11.90 16 8 O -0.59 -18.34 15.54 -3.00 -0.05 -18.38 16 9 N -0.70 -13.10 5.16 -440.03 -2.27 -15.37 16 10 C 0.12 2.73 4.29 45.52 0.20 2.93 16 11 C -0.15 -3.94 7.45 31.18 0.23 -3.71 16 12 C -0.11 -2.97 3.64 -10.21 -0.04 -3.01 16 13 C 0.16 5.95 6.10 86.38 0.53 6.48 16 14 N -0.76 -35.47 5.41 -343.46 -1.86 -37.33 16 15 C -0.24 -13.70 10.47 84.03 0.88 -12.82 16 16 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 18 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16 19 Si 0.96 45.70 27.74 68.60 1.90 47.60 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 22 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 23 C -0.12 -2.28 7.38 31.12 0.23 -2.05 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.66 6.57 -2.39 -0.02 0.65 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.55 6.57 -2.39 -0.02 0.54 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.52 7.56 -2.39 -0.02 0.51 16 34 H 0.41 5.45 8.12 -92.71 -0.75 4.70 16 35 H 0.09 2.21 7.50 -2.39 -0.02 2.19 16 36 H 0.08 2.38 7.90 -2.39 -0.02 2.36 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.02 0.82 7.85 -2.39 -0.02 0.80 16 41 H 0.37 16.22 5.53 -92.71 -0.51 15.71 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -74.53 351.32 2.41 -72.11 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.35 Total: 24.89 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 4.74 Total: -9.86 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.82 Total: -116.36 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.05 Total: -18.38 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Total: -74.53 2.41 -72.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281991216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.779 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds