Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47031 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99967 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00028 * 180.02562 * 5 4 3 8 8 C 1.47015 * 125.64542 * 359.97194 * 7 5 4 9 9 C 1.54326 * 107.26874 * 178.97766 * 8 7 5 10 10 H 1.09006 * 110.72052 * 219.26285 * 9 8 7 11 11 N 1.46499 * 110.71990 * 96.17055 * 9 8 7 12 12 C 1.36935 * 119.99938 * 88.84036 * 11 9 8 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 9 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31614 * 119.99892 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99858 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99644 * 16 14 12 18 18 H 1.48494 * 109.46800 * 209.99692 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99394 * 16 14 12 20 20 C 1.55150 * 103.10450 * 337.71613 * 9 8 7 21 21 C 1.53002 * 111.00872 * 153.66449 * 20 9 8 22 22 C 1.53001 * 111.00401 * 277.52054 * 20 9 8 23 23 C 1.47422 * 125.64828 * 180.02562 * 7 5 4 24 24 H 1.09000 * 109.47019 * 60.00179 * 1 2 3 25 25 H 1.09003 * 109.46678 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46905 * 300.00071 * 1 2 3 27 27 H 1.09005 * 109.47070 * 240.00227 * 2 1 3 28 28 H 1.08996 * 109.47056 * 120.00314 * 2 1 3 29 29 H 1.09005 * 109.46846 * 60.00090 * 3 2 1 30 30 H 1.09004 * 109.47402 * 300.00438 * 3 2 1 31 31 H 1.08994 * 109.47002 * 60.00706 * 4 3 2 32 32 H 1.09000 * 109.47019 * 299.99821 * 4 3 2 33 33 H 1.09002 * 109.88429 * 59.55994 * 8 7 5 34 34 H 1.09001 * 109.88384 * 298.39412 * 8 7 5 35 35 H 0.96999 * 119.99984 * 268.83971 * 11 9 8 36 36 H 0.97005 * 119.99715 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46671 * 59.99550 * 21 20 9 38 38 H 1.08997 * 109.47197 * 180.02562 * 21 20 9 39 39 H 1.09006 * 109.46722 * 300.00736 * 21 20 9 40 40 H 1.08999 * 109.47492 * 59.99793 * 22 20 9 41 41 H 1.09007 * 109.46708 * 180.02562 * 22 20 9 42 42 H 1.08996 * 109.46870 * 299.99365 * 22 20 9 43 43 H 1.09000 * 110.36851 * 322.92863 * 23 7 5 44 44 H 1.09002 * 110.36289 * 85.25280 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2842 3.7852 0.0008 7 7 5.3975 3.1096 0.0014 8 6 6.4581 2.0916 0.0015 9 6 7.8090 2.8374 -0.0247 10 1 8.5202 2.3244 -0.6721 11 7 8.3506 2.9765 1.3294 12 6 9.1528 1.9965 1.8499 13 1 9.3828 1.1189 1.2640 14 6 9.6665 2.1286 3.1328 15 7 10.4372 1.1864 3.6333 16 14 9.2626 3.6429 4.1492 17 1 8.0281 3.3958 4.9367 18 1 10.3886 3.9341 5.0725 19 1 9.0501 4.8028 3.2465 20 6 7.4339 4.2240 -0.6111 21 6 8.4148 5.3010 -0.1431 22 6 7.3663 4.1733 -2.1387 23 6 6.0233 4.4444 0.0025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 6.3661 1.4602 -0.8822 34 1 6.3880 1.4832 0.9032 35 1 8.1408 3.7629 1.8572 36 1 10.7958 1.2785 4.5299 37 1 9.4215 5.0431 -0.4721 38 1 8.1283 6.2628 -0.5684 39 1 8.3931 5.3641 0.9449 40 1 6.6120 3.4486 -2.4453 41 1 7.1020 5.1583 -2.5236 42 1 8.3372 3.8771 -2.5357 43 1 5.4461 5.1345 -0.6128 44 1 6.1078 4.8228 1.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284260586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = -43.598594 kcal Electronic energy + Delta-G solvation = -21490.762128 eV Core-core repulsion = 18442.575055 eV Total energy + Delta-G solvation = -3048.187073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10209 -38.16312 -35.34426 -34.06548 -33.27385 -31.12897 -30.55117 -28.28067 -26.93508 -26.62365 -24.22836 -23.45036 -21.47203 -21.07377 -19.15783 -18.68680 -17.62602 -16.59450 -16.19955 -15.53517 -14.99218 -14.67062 -14.46107 -13.93418 -13.85393 -13.69994 -13.17294 -12.87977 -12.65739 -12.50586 -12.47199 -12.12869 -12.05566 -11.77559 -11.69259 -11.34955 -11.30089 -11.26683 -11.05976 -11.00911 -10.63945 -10.62096 -10.54173 -10.30757 -9.97965 -9.65595 -9.58125 -9.05428 -8.30906 -7.40377 -5.87069 -3.23923 2.87985 3.27698 3.30274 3.34120 3.40143 4.50283 4.52957 4.78980 4.86187 4.87819 4.95786 5.04326 5.17462 5.25980 5.28301 5.45241 5.47461 5.54345 5.61326 5.63771 5.72688 5.74533 5.82064 5.84838 5.85704 5.95633 6.01858 6.02892 6.08961 6.14193 6.20067 6.22261 6.26150 6.31379 6.44701 6.56392 6.65063 6.68839 7.83515 7.87871 8.31828 8.41396 9.08979 9.81597 10.00345 11.30684 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.005351 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.477498 B = 5231.725658 C = 6110.012870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.136 4.136 5 C 0.525 3.475 6 O -0.557 6.557 7 N -0.609 5.609 8 C 0.072 3.928 9 C 0.184 3.816 10 H 0.080 0.920 11 N -0.737 5.737 12 C -0.250 4.250 13 H 0.093 0.907 14 C 0.011 3.989 15 N -0.929 5.929 16 Si 0.879 3.121 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.276 1.276 20 C -0.092 4.092 21 C -0.127 4.127 22 C -0.128 4.128 23 C 0.118 3.882 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 1.623 -10.461 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.176 4.176 5 C 0.314 3.686 6 O -0.437 6.437 7 N -0.342 5.342 8 C -0.054 4.054 9 C 0.073 3.927 10 H 0.097 0.903 11 N -0.379 5.379 12 C -0.380 4.380 13 H 0.110 0.890 14 C -0.185 4.185 15 N -0.576 5.576 16 Si 0.709 3.291 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.094 4.094 21 C -0.185 4.185 22 C -0.186 4.186 23 C -0.005 4.005 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.198 0.802 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.451 1.866 -10.387 16.322 hybrid contribution -0.130 0.898 0.992 1.344 sum -12.581 2.764 -9.395 15.943 Atomic orbital electron populations 1.21756 0.95884 1.01372 1.01885 1.21554 0.95919 0.96765 1.02101 1.21361 0.93008 0.96383 1.03331 1.21658 0.97527 0.93982 1.04442 1.20389 0.80598 0.91659 0.75948 1.90658 1.54673 1.46842 1.51490 1.48490 1.05077 1.08560 1.72063 1.23217 0.89033 0.91692 1.01443 1.21187 0.91622 0.92050 0.87879 0.90257 1.42794 1.58932 1.23594 1.12587 1.19050 1.21577 0.99188 0.98164 0.88959 1.24640 0.99295 0.97464 0.97114 1.69689 1.37259 1.33633 1.17036 0.86656 0.77815 0.83865 0.80735 1.21073 1.21588 1.20209 1.22148 0.94205 0.97449 0.95605 1.21605 0.98867 0.96321 1.01688 1.21661 1.01857 1.01490 0.93588 1.22328 0.92637 0.85052 1.00449 0.92797 0.92876 0.92720 0.92013 0.91865 0.91378 0.91460 0.89171 0.88843 0.92297 0.90216 0.80226 0.92924 0.91653 0.93292 0.92095 0.92720 0.92766 0.92111 0.91066 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.13 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.10 -1.20 4.50 -26.73 -0.12 -1.32 16 4 C -0.14 -1.70 4.89 -27.88 -0.14 -1.84 16 5 C 0.52 8.50 7.85 -10.98 -0.09 8.41 16 6 O -0.56 -10.67 16.24 5.55 0.09 -10.58 16 7 N -0.61 -9.76 3.32 -170.21 -0.56 -10.32 16 8 C 0.07 1.14 5.91 -3.07 -0.02 1.12 16 9 C 0.18 3.18 2.86 -66.10 -0.19 3.00 16 10 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 11 N -0.74 -15.98 4.36 -51.65 -0.23 -16.20 16 12 C -0.25 -6.55 10.45 -15.06 -0.16 -6.71 16 13 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 14 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 15 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 16 Si 0.88 21.42 27.74 -169.99 -4.71 16.71 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 20 C -0.09 -1.36 0.84 -152.09 -0.13 -1.48 16 21 C -0.13 -1.87 8.23 37.16 0.31 -1.56 16 22 C -0.13 -1.57 8.58 37.16 0.32 -1.25 16 23 C 0.12 1.87 5.83 -2.26 -0.01 1.86 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 35 H 0.36 7.98 4.07 -40.82 -0.17 7.82 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.02 6.44 -51.93 -0.33 0.68 16 40 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 41 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 44 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -30.56 348.36 -7.58 -38.13 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.08 Total: 6.13 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.11 Total: -1.83 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.01 Total: -53.80 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.56 -7.58 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284260586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.465 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds