Wall clock time and date at job start Mon Mar 30 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47356 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47031 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99967 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00028 * 180.02562 * 5 4 3 8 8 C 1.47015 * 125.64542 * 359.97194 * 7 5 4 9 9 C 1.54326 * 107.26874 * 178.97766 * 8 7 5 10 10 H 1.09006 * 110.72052 * 219.26285 * 9 8 7 11 11 N 1.46499 * 110.71990 * 96.17055 * 9 8 7 12 12 C 1.36935 * 119.99938 * 88.84036 * 11 9 8 13 13 H 1.08000 * 120.00518 * 359.72965 * 12 11 9 14 14 C 1.38817 * 119.99990 * 179.97438 * 12 11 9 15 15 N 1.31614 * 119.99892 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99858 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47174 * 89.99644 * 16 14 12 18 18 H 1.48494 * 109.46800 * 209.99692 * 16 14 12 19 19 H 1.48504 * 109.46913 * 329.99394 * 16 14 12 20 20 C 1.55150 * 103.10450 * 337.71613 * 9 8 7 21 21 C 1.53002 * 111.00872 * 153.66449 * 20 9 8 22 22 C 1.53001 * 111.00401 * 277.52054 * 20 9 8 23 23 C 1.47422 * 125.64828 * 180.02562 * 7 5 4 24 24 H 1.09000 * 109.47019 * 60.00179 * 1 2 3 25 25 H 1.09003 * 109.46678 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46905 * 300.00071 * 1 2 3 27 27 H 1.09005 * 109.47070 * 240.00227 * 2 1 3 28 28 H 1.08996 * 109.47056 * 120.00314 * 2 1 3 29 29 H 1.09005 * 109.46846 * 60.00090 * 3 2 1 30 30 H 1.09004 * 109.47402 * 300.00438 * 3 2 1 31 31 H 1.08994 * 109.47002 * 60.00706 * 4 3 2 32 32 H 1.09000 * 109.47019 * 299.99821 * 4 3 2 33 33 H 1.09002 * 109.88429 * 59.55994 * 8 7 5 34 34 H 1.09001 * 109.88384 * 298.39412 * 8 7 5 35 35 H 0.96999 * 119.99984 * 268.83971 * 11 9 8 36 36 H 0.97005 * 119.99715 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46671 * 59.99550 * 21 20 9 38 38 H 1.08997 * 109.47197 * 180.02562 * 21 20 9 39 39 H 1.09006 * 109.46722 * 300.00736 * 21 20 9 40 40 H 1.08999 * 109.47492 * 59.99793 * 22 20 9 41 41 H 1.09007 * 109.46708 * 180.02562 * 22 20 9 42 42 H 1.08996 * 109.46870 * 299.99365 * 22 20 9 43 43 H 1.09000 * 110.36851 * 322.92863 * 23 7 5 44 44 H 1.09002 * 110.36289 * 85.25280 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2842 3.7852 0.0008 7 7 5.3975 3.1096 0.0014 8 6 6.4581 2.0916 0.0015 9 6 7.8090 2.8374 -0.0247 10 1 8.5202 2.3244 -0.6721 11 7 8.3506 2.9765 1.3294 12 6 9.1528 1.9965 1.8499 13 1 9.3828 1.1189 1.2640 14 6 9.6665 2.1286 3.1328 15 7 10.4372 1.1864 3.6333 16 14 9.2626 3.6429 4.1492 17 1 8.0281 3.3958 4.9367 18 1 10.3886 3.9341 5.0725 19 1 9.0501 4.8028 3.2465 20 6 7.4339 4.2240 -0.6111 21 6 8.4148 5.3010 -0.1431 22 6 7.3663 4.1733 -2.1387 23 6 6.0233 4.4444 0.0025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 6.3661 1.4602 -0.8822 34 1 6.3880 1.4832 0.9032 35 1 8.1408 3.7629 1.8572 36 1 10.7958 1.2785 4.5299 37 1 9.4215 5.0431 -0.4721 38 1 8.1283 6.2628 -0.5684 39 1 8.3931 5.3641 0.9449 40 1 6.6120 3.4486 -2.4453 41 1 7.1020 5.1583 -2.5236 42 1 8.3372 3.8771 -2.5357 43 1 5.4461 5.1345 -0.6128 44 1 6.1078 4.8228 1.0212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284260586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:00 Heat of formation + Delta-G solvation = -61.670173 kcal Electronic energy + Delta-G solvation = -21491.545771 eV Core-core repulsion = 18442.575055 eV Total energy + Delta-G solvation = -3048.970715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39898 -39.47616 -36.25900 -35.81111 -34.61549 -33.03285 -31.46952 -29.72946 -28.11161 -27.76966 -25.60843 -24.81266 -22.94093 -21.94429 -20.60751 -19.98675 -19.36912 -17.86598 -17.42240 -16.85052 -16.32160 -16.07025 -16.02367 -15.29371 -15.00376 -14.63696 -14.51764 -14.41869 -13.85370 -13.80263 -13.57588 -13.51221 -13.18792 -13.11600 -12.90449 -12.82190 -12.73920 -12.22675 -12.17761 -12.12761 -11.95487 -11.86987 -11.84607 -11.60039 -11.46059 -11.33557 -11.02284 -10.83886 -9.64952 -9.31822 -8.01541 -5.33873 1.35532 1.37512 1.44004 1.61283 2.04617 2.47043 3.29090 3.32397 3.52901 3.74905 3.79510 3.93368 3.97804 4.03441 4.26511 4.33374 4.42555 4.43638 4.58830 4.59083 4.63001 4.72916 4.74886 4.86175 4.91056 4.91967 4.98533 4.99903 5.06487 5.07144 5.10788 5.23319 5.28135 5.32349 5.37562 5.38115 5.49135 5.50469 5.80567 6.22901 6.55990 7.07934 7.14212 7.84265 8.01578 9.19532 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.005351 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.477498 B = 5231.725658 C = 6110.012870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.131 4.131 5 C 0.519 3.481 6 O -0.591 6.591 7 N -0.610 5.610 8 C 0.082 3.918 9 C 0.173 3.827 10 H 0.083 0.917 11 N -0.740 5.740 12 C -0.221 4.221 13 H 0.070 0.930 14 C -0.054 4.054 15 N -0.979 5.979 16 Si 0.936 3.064 17 H -0.289 1.289 18 H -0.297 1.297 19 H -0.252 1.252 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.123 4.123 23 C 0.115 3.885 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.363 0.637 36 H 0.256 0.744 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 2.130 -12.280 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.136 4.136 4 C -0.170 4.170 5 C 0.310 3.690 6 O -0.472 6.472 7 N -0.342 5.342 8 C -0.044 4.044 9 C 0.063 3.937 10 H 0.101 0.899 11 N -0.383 5.383 12 C -0.352 4.352 13 H 0.088 0.912 14 C -0.246 4.246 15 N -0.630 5.630 16 Si 0.765 3.235 17 H -0.216 1.216 18 H -0.224 1.224 19 H -0.176 1.176 20 C -0.081 4.081 21 C -0.184 4.184 22 C -0.180 4.180 23 C -0.008 4.008 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.197 0.803 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.531 2.393 -12.262 18.417 hybrid contribution 0.158 0.724 1.458 1.635 sum -13.373 3.117 -10.805 17.473 Atomic orbital electron populations 1.21767 0.95316 1.02158 1.01744 1.21530 0.96426 0.95123 1.02820 1.21319 0.92481 0.97723 1.02108 1.21717 0.97946 0.91658 1.05715 1.21058 0.80223 0.92810 0.74957 1.90640 1.55361 1.48214 1.53017 1.48576 1.05226 1.08616 1.71799 1.23012 0.87961 0.91408 1.01974 1.21462 0.92139 0.94331 0.85762 0.89909 1.42801 1.58593 1.22518 1.14350 1.19051 1.19967 0.98803 0.97365 0.91209 1.25283 1.00364 1.00263 0.98689 1.69841 1.39789 1.36013 1.17373 0.85713 0.76808 0.81678 0.79345 1.21577 1.22422 1.17648 1.22105 0.93182 0.95490 0.97291 1.21599 0.98796 0.97704 1.00312 1.21632 1.02615 1.02645 0.91108 1.22359 0.93435 0.85244 0.99772 0.92646 0.91618 0.93234 0.90717 0.91667 0.93213 0.92132 0.86728 0.88431 0.89097 0.92265 0.80256 0.93497 0.91882 0.90719 0.94339 0.92471 0.91174 0.91104 0.90497 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.12 -2.04 5.93 30.59 0.18 -1.86 16 3 C -0.10 -2.16 4.50 30.59 0.14 -2.02 16 4 C -0.13 -3.01 4.89 29.85 0.15 -2.86 16 5 C 0.52 16.04 7.85 87.66 0.69 16.73 16 6 O -0.59 -22.19 16.24 -3.05 -0.05 -22.24 16 7 N -0.61 -18.44 3.32 -810.80 -2.69 -21.13 16 8 C 0.08 2.42 5.91 86.73 0.51 2.93 16 9 C 0.17 5.65 2.86 46.18 0.13 5.78 16 10 H 0.08 2.69 8.01 -2.38 -0.02 2.67 16 11 N -0.74 -31.38 4.36 -317.33 -1.38 -32.77 16 12 C -0.22 -11.58 10.45 84.04 0.88 -10.71 16 13 H 0.07 3.94 8.06 -2.91 -0.02 3.91 16 14 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 15 N -0.98 -60.56 13.97 21.65 0.30 -60.26 16 16 Si 0.94 44.55 27.74 68.60 1.90 46.45 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 20 C -0.08 -2.13 0.84 -50.62 -0.04 -2.17 16 21 C -0.13 -3.42 8.23 71.98 0.59 -2.83 16 22 C -0.12 -2.55 8.58 71.98 0.62 -1.93 16 23 C 0.11 3.43 5.83 87.03 0.51 3.93 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 30 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.03 8.04 -2.39 -0.02 2.01 16 35 H 0.36 15.52 4.07 -92.71 -0.38 15.14 16 36 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.21 6.44 -2.38 -0.02 1.19 16 40 H 0.06 1.18 7.91 -2.39 -0.02 1.16 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.22 7.95 -2.39 -0.02 2.20 16 44 H 0.05 1.53 8.00 -2.39 -0.02 1.51 16 Total: -1.00 -66.56 348.36 4.12 -62.43 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.51 Total: 26.72 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.53 Total: 0.78 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.77 Total: -114.15 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -66.56 4.12 -62.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284260586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.764 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds