Wall clock time and date at job start Mon Mar 30 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46918 * 2 1 4 4 C 1.53004 * 109.46717 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47499 * 304.99991 * 4 3 2 6 6 C 1.53006 * 109.46959 * 65.00120 * 4 3 2 7 7 C 1.52998 * 109.47069 * 185.45858 * 6 4 3 8 8 C 1.50697 * 109.46780 * 184.99892 * 4 3 2 9 9 O 1.21280 * 119.99914 * 275.02413 * 8 4 3 10 10 N 1.34778 * 120.00241 * 94.75343 * 8 4 3 11 11 C 1.47024 * 125.64390 * 354.96742 * 10 8 4 12 12 C 1.54337 * 107.26614 * 178.84932 * 11 10 8 13 13 C 1.55150 * 103.01749 * 338.14639 * 12 11 10 14 14 H 1.09004 * 111.03578 * 277.20757 * 13 12 11 15 15 N 1.46501 * 111.00511 * 153.37952 * 13 12 11 16 16 C 1.36941 * 120.00244 * 92.79612 * 15 13 12 17 17 H 1.08001 * 119.99494 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00038 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47486 * 89.99729 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00021 * 20 18 16 23 23 H 1.48499 * 109.46959 * 329.99464 * 20 18 16 24 24 C 1.47425 * 125.65277 * 175.27811 * 10 8 4 25 25 H 1.09006 * 109.46604 * 60.00340 * 1 2 3 26 26 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47520 * 300.00097 * 1 2 3 28 28 H 1.08999 * 109.46794 * 239.99755 * 2 1 3 29 29 H 1.08995 * 109.46654 * 120.00165 * 2 1 3 30 30 H 1.08992 * 109.47243 * 60.00087 * 3 2 1 31 31 H 1.08997 * 109.47089 * 299.99454 * 3 2 1 32 32 H 1.08996 * 109.47024 * 305.45786 * 6 4 3 33 33 H 1.08997 * 109.46799 * 65.46226 * 6 4 3 34 34 H 1.08995 * 109.47541 * 294.93816 * 7 6 4 35 35 H 1.09004 * 109.46880 * 54.93782 * 7 6 4 36 36 H 1.08998 * 109.47006 * 174.93458 * 7 6 4 37 37 H 1.08996 * 109.88691 * 298.40309 * 11 10 8 38 38 H 1.09005 * 109.88005 * 59.56174 * 11 10 8 39 39 H 1.08998 * 110.85016 * 219.67401 * 12 11 10 40 40 H 1.09002 * 110.66145 * 96.52332 * 12 11 10 41 41 H 0.97001 * 120.00163 * 272.80337 * 15 13 12 42 42 H 0.97001 * 120.00101 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.36551 * 322.93347 * 24 10 8 44 44 H 1.08997 * 110.36171 * 85.14271 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 5.6043 0.7073 -1.2498 8 6 4.0723 2.8579 0.1245 9 8 4.1881 3.5490 -0.8654 10 7 4.3876 3.3576 1.3358 11 6 4.1923 2.6731 2.6223 12 6 4.7230 3.6122 3.7260 13 6 5.6983 4.5409 2.9556 14 1 6.6742 4.0704 2.8359 15 7 5.8229 5.8398 3.6216 16 6 6.8221 6.0482 4.5345 17 1 7.5185 5.2550 4.7632 18 6 6.9399 7.2787 5.1659 19 7 6.0908 8.2452 4.8876 20 14 8.3034 7.5631 6.4107 21 1 9.5078 8.0837 5.7154 22 1 7.8510 8.5503 7.4235 23 1 8.6353 6.2812 7.0828 24 6 4.9794 4.6835 1.5909 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6396 -0.1547 -1.4433 33 1 3.7996 1.4749 -2.1411 34 1 6.0492 1.7012 -1.2034 35 1 5.8895 0.1398 -0.3639 36 1 5.9598 0.1913 -2.1417 37 1 3.1321 2.4748 2.7796 38 1 4.7519 1.7377 2.6332 39 1 5.2529 3.0482 4.4936 40 1 3.9085 4.1879 4.1656 41 1 5.1976 6.5523 3.4160 42 1 6.1729 9.1049 5.3291 43 1 5.6959 4.9358 0.8091 44 1 4.1992 5.4423 1.6487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317065624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:30 Heat of formation + Delta-G solvation = -50.401732 kcal Electronic energy + Delta-G solvation = -21085.756379 eV Core-core repulsion = 18037.274300 eV Total energy + Delta-G solvation = -3048.482079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12187 -37.65107 -36.13353 -34.12963 -33.15516 -31.53452 -29.63751 -29.35938 -27.69149 -24.88652 -23.71059 -22.93527 -22.23665 -20.91514 -20.06131 -18.62757 -17.39681 -17.15536 -15.96772 -15.41780 -15.19816 -14.84824 -14.45514 -14.01208 -13.69154 -13.38289 -13.31190 -13.21245 -13.08347 -12.70193 -12.47860 -12.09287 -11.94034 -11.85306 -11.63774 -11.49906 -11.28672 -11.18068 -10.93254 -10.88014 -10.79730 -10.71108 -10.56082 -10.28978 -10.08552 -9.79101 -9.46872 -8.98254 -8.37134 -7.06900 -5.84061 -3.14792 2.80608 3.18930 3.39991 3.45371 3.46841 4.44435 4.53181 4.56028 4.71516 4.89463 4.96237 5.05164 5.09100 5.19940 5.30163 5.33405 5.36879 5.48509 5.55332 5.58476 5.59504 5.60828 5.67149 5.70569 5.75485 5.90279 5.91667 5.98882 6.01329 6.09956 6.13463 6.18177 6.21448 6.26599 6.37769 6.56470 6.62711 6.88943 7.63488 7.78170 8.33001 8.38068 9.44893 9.98947 10.33868 11.38110 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031040 B = 0.003686 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.851868 B = 7595.059073 C = 7903.985694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.103 4.103 5 H 0.088 0.912 6 C -0.109 4.109 7 C -0.155 4.155 8 C 0.532 3.468 9 O -0.546 6.546 10 N -0.614 5.614 11 C 0.102 3.898 12 C -0.156 4.156 13 C 0.172 3.828 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.097 3.903 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.074 0.926 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 -18.232 -8.522 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.125 4.125 5 H 0.106 0.894 6 C -0.147 4.147 7 C -0.212 4.212 8 C 0.320 3.680 9 O -0.424 6.424 10 N -0.347 5.347 11 C -0.021 4.021 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.084 0.916 15 N -0.354 5.354 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.026 4.026 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.871 -17.855 -8.990 21.484 hybrid contribution 0.483 0.465 0.835 1.071 sum -7.388 -17.390 -8.155 20.579 Atomic orbital electron populations 1.21776 0.95769 1.01533 1.01984 1.21577 0.95889 0.96296 1.02283 1.21520 0.92514 0.97573 1.03000 1.21399 0.97041 0.93480 1.00562 0.89380 1.21480 0.96094 1.00667 0.96451 1.21805 0.95824 1.02189 1.01420 1.20249 0.77265 0.88851 0.81622 1.90673 1.54198 1.61052 1.36448 1.48521 1.61997 1.18425 1.05797 1.22086 1.00134 0.96337 0.83558 1.23423 1.01171 0.98275 0.96856 1.21287 0.95587 0.88342 0.88761 0.91591 1.42271 1.36008 1.09195 1.47916 1.19229 1.06199 0.97206 1.15023 0.90964 1.24775 0.99136 0.96167 1.00555 1.69665 1.38103 1.03955 1.46027 0.86166 0.81459 0.77554 0.80831 1.21609 1.21716 1.20670 1.22584 0.97349 0.83729 0.98974 0.92713 0.92770 0.92667 0.91542 0.91847 0.91560 0.91122 0.91120 0.90685 0.92379 0.92906 0.92607 0.92106 0.91986 0.90717 0.90642 0.77934 0.93332 0.90775 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.94 5.70 -26.73 -0.15 -1.09 16 3 C -0.11 -1.07 4.66 -26.73 -0.12 -1.19 16 4 C -0.10 -1.16 1.82 -91.77 -0.17 -1.32 16 5 H 0.09 0.87 6.91 -51.93 -0.36 0.51 16 6 C -0.11 -1.14 5.04 -26.73 -0.13 -1.27 16 7 C -0.16 -1.66 9.65 37.16 0.36 -1.30 16 8 C 0.53 8.22 5.98 -10.99 -0.07 8.16 16 9 O -0.55 -10.43 16.28 5.56 0.09 -10.34 16 10 N -0.61 -9.55 3.33 -170.52 -0.57 -10.12 16 11 C 0.10 1.34 6.21 -3.06 -0.02 1.32 16 12 C -0.16 -2.51 6.64 -24.89 -0.17 -2.67 16 13 C 0.17 3.33 3.72 -65.79 -0.24 3.08 16 14 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 15 N -0.71 -17.39 5.24 -51.36 -0.27 -17.66 16 16 C -0.25 -6.62 9.96 -15.06 -0.15 -6.77 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.10 1.76 6.53 -2.53 -0.02 1.74 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.47 6.45 -51.93 -0.34 0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.58 6.33 -51.93 -0.33 0.25 16 33 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 34 H 0.06 0.77 7.42 -51.93 -0.39 0.38 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.70 7.63 -51.93 -0.40 0.30 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.39 10.06 7.76 -40.82 -0.32 9.75 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 44 H 0.07 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -30.69 350.15 -8.35 -39.03 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.97 Total: 6.20 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.61 Total: -2.41 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.69 -8.35 -39.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317065624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.367 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds