Wall clock time and date at job start Mon Mar 30 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46918 * 2 1 4 4 C 1.53004 * 109.46717 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47499 * 304.99991 * 4 3 2 6 6 C 1.53006 * 109.46959 * 65.00120 * 4 3 2 7 7 C 1.52998 * 109.47069 * 185.45858 * 6 4 3 8 8 C 1.50697 * 109.46780 * 184.99892 * 4 3 2 9 9 O 1.21280 * 119.99914 * 275.02413 * 8 4 3 10 10 N 1.34778 * 120.00241 * 94.75343 * 8 4 3 11 11 C 1.47024 * 125.64390 * 354.96742 * 10 8 4 12 12 C 1.54337 * 107.26614 * 178.84932 * 11 10 8 13 13 C 1.55150 * 103.01749 * 338.14639 * 12 11 10 14 14 H 1.09004 * 111.03578 * 277.20757 * 13 12 11 15 15 N 1.46501 * 111.00511 * 153.37952 * 13 12 11 16 16 C 1.36941 * 120.00244 * 92.79612 * 15 13 12 17 17 H 1.08001 * 119.99494 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00038 * 180.02562 * 16 15 13 19 19 N 1.31621 * 120.00320 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47486 * 89.99729 * 20 18 16 22 22 H 1.48500 * 109.47037 * 210.00021 * 20 18 16 23 23 H 1.48499 * 109.46959 * 329.99464 * 20 18 16 24 24 C 1.47425 * 125.65277 * 175.27811 * 10 8 4 25 25 H 1.09006 * 109.46604 * 60.00340 * 1 2 3 26 26 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47520 * 300.00097 * 1 2 3 28 28 H 1.08999 * 109.46794 * 239.99755 * 2 1 3 29 29 H 1.08995 * 109.46654 * 120.00165 * 2 1 3 30 30 H 1.08992 * 109.47243 * 60.00087 * 3 2 1 31 31 H 1.08997 * 109.47089 * 299.99454 * 3 2 1 32 32 H 1.08996 * 109.47024 * 305.45786 * 6 4 3 33 33 H 1.08997 * 109.46799 * 65.46226 * 6 4 3 34 34 H 1.08995 * 109.47541 * 294.93816 * 7 6 4 35 35 H 1.09004 * 109.46880 * 54.93782 * 7 6 4 36 36 H 1.08998 * 109.47006 * 174.93458 * 7 6 4 37 37 H 1.08996 * 109.88691 * 298.40309 * 11 10 8 38 38 H 1.09005 * 109.88005 * 59.56174 * 11 10 8 39 39 H 1.08998 * 110.85016 * 219.67401 * 12 11 10 40 40 H 1.09002 * 110.66145 * 96.52332 * 12 11 10 41 41 H 0.97001 * 120.00163 * 272.80337 * 15 13 12 42 42 H 0.97001 * 120.00101 * 179.97438 * 19 18 16 43 43 H 1.08999 * 110.36551 * 322.93347 * 24 10 8 44 44 H 1.08997 * 110.36171 * 85.14271 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0805 0.8326 -1.3065 7 6 5.6043 0.7073 -1.2498 8 6 4.0723 2.8579 0.1245 9 8 4.1881 3.5490 -0.8654 10 7 4.3876 3.3576 1.3358 11 6 4.1923 2.6731 2.6223 12 6 4.7230 3.6122 3.7260 13 6 5.6983 4.5409 2.9556 14 1 6.6742 4.0704 2.8359 15 7 5.8229 5.8398 3.6216 16 6 6.8221 6.0482 4.5345 17 1 7.5185 5.2550 4.7632 18 6 6.9399 7.2787 5.1659 19 7 6.0908 8.2452 4.8876 20 14 8.3034 7.5631 6.4107 21 1 9.5078 8.0837 5.7154 22 1 7.8510 8.5503 7.4235 23 1 8.6353 6.2812 7.0828 24 6 4.9794 4.6835 1.5909 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.6396 -0.1547 -1.4433 33 1 3.7996 1.4749 -2.1411 34 1 6.0492 1.7012 -1.2034 35 1 5.8895 0.1398 -0.3639 36 1 5.9598 0.1913 -2.1417 37 1 3.1321 2.4748 2.7796 38 1 4.7519 1.7377 2.6332 39 1 5.2529 3.0482 4.4936 40 1 3.9085 4.1879 4.1656 41 1 5.1976 6.5523 3.4160 42 1 6.1729 9.1049 5.3291 43 1 5.6959 4.9358 0.8091 44 1 4.1992 5.4423 1.6487 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317065624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:30 Heat of formation + Delta-G solvation = -68.934029 kcal Electronic energy + Delta-G solvation = -21086.560000 eV Core-core repulsion = 18037.274300 eV Total energy + Delta-G solvation = -3049.285700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34620 -38.97870 -37.10726 -35.93908 -33.89609 -33.31474 -31.09618 -30.34364 -29.12015 -26.12359 -25.17918 -24.20887 -23.13971 -21.83428 -21.50638 -19.77823 -19.33557 -18.36465 -17.39650 -16.49895 -16.40925 -16.02791 -15.73596 -15.51357 -14.95255 -14.65282 -14.51682 -14.32941 -14.04233 -14.00414 -13.53493 -13.34706 -13.15077 -13.04506 -12.90528 -12.67602 -12.58042 -12.41058 -12.23585 -12.12611 -11.95181 -11.78094 -11.69784 -11.67554 -11.59448 -11.27099 -10.96218 -10.68983 -9.67586 -9.06674 -7.96198 -5.26835 1.48805 1.50560 1.58713 1.60131 1.95097 2.56581 3.33445 3.47305 3.69373 3.74580 3.89604 3.93163 4.04801 4.23849 4.24892 4.28943 4.32627 4.34431 4.48039 4.50722 4.58646 4.68826 4.72836 4.82514 4.83660 4.90167 4.97209 4.98319 5.08438 5.12537 5.20721 5.24309 5.29200 5.32875 5.35858 5.40527 5.44652 5.52234 5.52578 6.24299 6.56002 7.14427 7.30907 8.02033 8.26301 9.27185 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031040 B = 0.003686 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.851868 B = 7595.059073 C = 7903.985694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.094 4.094 5 H 0.113 0.887 6 C -0.107 4.107 7 C -0.154 4.154 8 C 0.526 3.474 9 O -0.591 6.591 10 N -0.615 5.615 11 C 0.108 3.892 12 C -0.145 4.145 13 C 0.167 3.833 14 H 0.065 0.935 15 N -0.729 5.729 16 C -0.242 4.242 17 H 0.082 0.918 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.265 1.265 24 C 0.105 3.895 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.055 0.945 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 -21.668 -7.832 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.143 4.143 4 C -0.115 4.115 5 H 0.131 0.869 6 C -0.145 4.145 7 C -0.211 4.211 8 C 0.317 3.683 9 O -0.472 6.472 10 N -0.348 5.348 11 C -0.014 4.014 12 C -0.185 4.185 13 C 0.057 3.943 14 H 0.083 0.917 15 N -0.368 5.368 16 C -0.374 4.374 17 H 0.100 0.900 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.217 1.217 22 H -0.224 1.224 23 H -0.189 1.189 24 C -0.019 4.019 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.049 -21.373 -8.298 24.299 hybrid contribution 0.521 1.497 0.531 1.672 sum -7.527 -19.876 -7.767 22.628 Atomic orbital electron populations 1.21788 0.95585 1.02214 1.01634 1.21554 0.96005 0.94457 1.03407 1.21516 0.91361 0.99273 1.02147 1.21477 0.97817 0.90271 1.01942 0.86867 1.21508 0.96047 1.01723 0.95198 1.21805 0.95865 1.00543 1.02923 1.21179 0.76177 0.90339 0.80648 1.90652 1.55983 1.62587 1.37930 1.48624 1.61687 1.17385 1.07095 1.22224 1.02189 0.96236 0.80798 1.23214 0.99747 0.97883 0.97690 1.21439 0.96558 0.86931 0.89418 0.91703 1.42429 1.35410 1.10807 1.48181 1.19638 1.06150 0.97197 1.14375 0.90009 1.25597 1.01718 0.96241 1.03101 1.69828 1.40262 1.04249 1.47699 0.85120 0.78445 0.77709 0.78350 1.21707 1.22375 1.18911 1.22246 0.96539 0.85304 0.97834 0.93258 0.91563 0.92936 0.90665 0.90387 0.91843 0.92735 0.87906 0.92912 0.95777 0.91274 0.91295 0.89507 0.88676 0.89412 0.91997 0.79457 0.93987 0.92688 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.36 5.70 30.60 0.17 -1.18 16 3 C -0.10 -1.82 4.66 30.60 0.14 -1.67 16 4 C -0.09 -1.86 1.82 -11.54 -0.02 -1.88 16 5 H 0.11 1.70 6.91 -2.39 -0.02 1.69 16 6 C -0.11 -2.00 5.04 30.60 0.15 -1.84 16 7 C -0.15 -3.00 9.65 71.98 0.69 -2.31 16 8 C 0.53 15.88 5.98 87.66 0.52 16.41 16 9 O -0.59 -23.18 16.28 -3.03 -0.05 -23.23 16 10 N -0.61 -18.49 3.33 -811.78 -2.70 -21.19 16 11 C 0.11 2.48 6.21 86.73 0.54 3.01 16 12 C -0.14 -4.38 6.64 31.78 0.21 -4.17 16 13 C 0.17 6.41 3.72 46.38 0.17 6.58 16 14 H 0.06 2.51 8.09 -2.38 -0.02 2.49 16 15 N -0.73 -36.15 5.24 -316.39 -1.66 -37.81 16 16 C -0.24 -13.06 9.96 84.03 0.84 -12.23 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 19 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 20 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 C 0.11 3.91 6.53 86.85 0.57 4.48 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.76 6.45 -2.39 -0.02 0.75 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.28 6.33 -2.39 -0.02 1.27 16 33 H 0.05 1.23 7.66 -2.39 -0.02 1.21 16 34 H 0.02 0.62 7.42 -2.39 -0.02 0.60 16 35 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.10 1.65 7.63 -2.38 -0.02 1.64 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.37 20.20 7.76 -92.71 -0.72 19.48 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.05 2.22 8.09 -2.39 -0.02 2.20 16 44 H 0.05 2.04 8.01 -2.39 -0.02 2.03 16 Total: -1.00 -68.64 350.15 3.31 -65.33 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.23 Total: 27.95 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.18 Total: 0.39 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.08 Total: -117.76 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.64 3.31 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317065624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.606 kcal (2) G-P(sol) polarization free energy of solvation -68.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds