Wall clock time and date at job start Mon Mar 30 2020 00:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 C 1.52994 * 109.47421 * 184.48748 * 3 2 1 5 5 H 1.08999 * 109.46914 * 55.54680 * 4 3 2 6 6 C 1.53000 * 109.47171 * 295.54980 * 4 3 2 7 7 C 1.52993 * 109.47076 * 302.43419 * 6 4 3 8 8 C 1.50693 * 109.47386 * 175.54614 * 4 3 2 9 9 O 1.21285 * 120.00041 * 25.40402 * 8 4 3 10 10 N 1.34777 * 120.00344 * 205.39812 * 8 4 3 11 11 C 1.47022 * 125.64715 * 354.96315 * 10 8 4 12 12 C 1.54326 * 107.27364 * 178.96102 * 11 10 8 13 13 C 1.55153 * 102.93957 * 337.80470 * 12 11 10 14 14 H 1.09004 * 111.00622 * 277.38844 * 13 12 11 15 15 N 1.46501 * 111.00462 * 153.57710 * 13 12 11 16 16 C 1.36940 * 119.99800 * 86.45307 * 15 13 12 17 17 H 1.07992 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99772 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46869 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47262 * 300.00095 * 20 18 16 23 23 H 1.48498 * 109.47316 * 60.00300 * 20 18 16 24 24 C 1.47425 * 125.65207 * 174.97985 * 10 8 4 25 25 H 1.09000 * 109.47341 * 59.99821 * 1 2 3 26 26 H 1.09001 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47329 * 299.99737 * 1 2 3 28 28 H 1.09004 * 109.46422 * 240.00194 * 2 1 3 29 29 H 1.08998 * 109.47254 * 120.00716 * 2 1 3 30 30 H 1.09003 * 109.46978 * 64.48697 * 3 2 1 31 31 H 1.09004 * 109.47120 * 304.49387 * 3 2 1 32 32 H 1.09000 * 109.47126 * 62.43581 * 6 4 3 33 33 H 1.09005 * 109.47107 * 182.43537 * 6 4 3 34 34 H 1.08996 * 109.47341 * 185.12881 * 7 6 4 35 35 H 1.09002 * 109.47097 * 305.13155 * 7 6 4 36 36 H 1.09004 * 109.47348 * 65.12899 * 7 6 4 37 37 H 1.08998 * 109.88359 * 59.53992 * 11 10 8 38 38 H 1.09001 * 109.88235 * 298.37598 * 11 10 8 39 39 H 1.09001 * 110.71788 * 219.44707 * 12 11 10 40 40 H 1.08996 * 110.87167 * 96.23838 * 12 11 10 41 41 H 0.96999 * 120.00111 * 266.45700 * 15 13 12 42 42 H 0.96991 * 119.99856 * 0.02562 * 19 18 16 43 43 H 1.09011 * 110.36115 * 85.27340 * 24 10 8 44 44 H 1.08996 * 110.36936 * 322.95192 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5658 1.4440 -0.1129 5 1 3.8650 0.8852 -0.9996 6 6 4.1698 0.7886 1.1307 7 6 3.7006 1.5365 2.3802 8 6 4.0600 2.8633 -0.2230 9 8 3.3984 3.7727 0.2312 10 7 5.2372 3.1222 -0.8260 11 6 6.1844 2.1143 -1.3245 12 6 7.3703 2.8731 -1.9567 13 6 6.7594 4.2611 -2.2848 14 1 6.2188 4.2362 -3.2310 15 7 7.7930 5.2992 -2.3010 16 6 8.5044 5.5393 -3.4463 17 1 8.3031 4.9637 -4.3376 18 6 9.4833 6.5233 -3.4618 19 7 9.7282 7.2251 -2.3755 20 14 10.4542 6.8503 -5.0237 21 1 11.4319 7.9410 -4.7796 22 1 11.1786 5.6171 -5.4237 23 1 9.5243 7.2523 -6.1095 24 6 5.7884 4.4628 -1.0948 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7438 1.9325 0.9275 31 1 1.6124 1.9790 -0.8470 32 1 3.8469 -0.2510 1.1868 33 1 5.2575 0.8284 1.0705 34 1 4.2015 1.1279 3.2578 35 1 3.9434 2.5946 2.2829 36 1 2.6224 1.4198 2.4901 37 1 5.7006 1.4905 -2.0760 38 1 6.5375 1.4969 -0.4985 39 1 7.7061 2.3749 -2.8661 40 1 8.1914 2.9713 -1.2466 41 1 7.9735 5.8164 -1.5005 42 1 9.2248 7.0545 -1.5642 43 1 6.3284 4.8326 -0.2231 44 1 4.9907 5.1531 -1.3689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317065625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:33 Heat of formation + Delta-G solvation = -47.558736 kcal Electronic energy + Delta-G solvation = -21129.682438 eV Core-core repulsion = 18081.323641 eV Total energy + Delta-G solvation = -3048.358798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24869 -37.81988 -36.24313 -34.44173 -33.08235 -31.52006 -29.50443 -29.12710 -27.65280 -25.20712 -23.66160 -23.18415 -22.41252 -20.56736 -20.16252 -18.58095 -17.50686 -17.01459 -16.06519 -15.97638 -15.24605 -14.84392 -14.63818 -14.14783 -13.71331 -13.63542 -13.33421 -13.24641 -12.93567 -12.72439 -12.54488 -12.21665 -12.08444 -11.95519 -11.68702 -11.41748 -11.21576 -11.11483 -11.03958 -10.77939 -10.73797 -10.67098 -10.57303 -10.27701 -10.02030 -9.53684 -9.24432 -8.98566 -8.44652 -7.14276 -6.17078 -3.19075 2.75275 3.11030 3.48710 3.51908 3.69628 4.42723 4.52954 4.61700 4.67975 4.90912 4.94819 4.97226 4.99694 5.07870 5.26299 5.28776 5.39082 5.45037 5.49123 5.50325 5.56775 5.60035 5.66378 5.69060 5.73824 5.80818 5.87891 5.91246 5.95780 6.00286 6.08530 6.12922 6.15348 6.28314 6.30947 6.48989 6.52841 6.81137 7.70666 7.73460 8.30714 8.68184 9.12550 9.99122 10.12675 11.30887 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039963 B = 0.003474 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.471245 B = 8059.050605 C = 8173.735764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.104 4.104 5 H 0.089 0.911 6 C -0.112 4.112 7 C -0.158 4.158 8 C 0.532 3.468 9 O -0.544 6.544 10 N -0.614 5.614 11 C 0.102 3.898 12 C -0.154 4.154 13 C 0.177 3.823 14 H 0.064 0.936 15 N -0.727 5.727 16 C -0.336 4.336 17 H 0.066 0.934 18 C -0.042 4.042 19 N -0.940 5.940 20 Si 1.081 2.919 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.294 1.294 24 C 0.099 3.901 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.369 0.631 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 -16.967 5.351 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.125 4.125 5 H 0.107 0.893 6 C -0.150 4.150 7 C -0.215 4.215 8 C 0.320 3.680 9 O -0.422 6.422 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.195 4.195 13 C 0.065 3.935 14 H 0.082 0.918 15 N -0.368 5.368 16 C -0.467 4.467 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.585 5.585 20 Si 0.911 3.089 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.025 4.025 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.623 -15.635 4.740 20.646 hybrid contribution -1.020 -0.938 0.825 1.613 sum -13.643 -16.574 5.565 22.176 Atomic orbital electron populations 1.21764 0.95825 1.01400 1.01974 1.21571 0.95900 0.96667 1.02022 1.21510 0.92318 0.96759 1.03631 1.21361 0.97461 0.93296 1.00377 0.89303 1.21458 1.00456 0.99594 0.93466 1.21875 1.01491 1.01312 0.96819 1.20276 0.79460 0.91178 0.77049 1.90679 1.56390 1.47472 1.47638 1.48496 1.19096 1.08668 1.58512 1.22109 0.90638 0.91465 0.97943 1.23384 0.96319 0.98975 1.00848 1.21229 0.88998 0.88248 0.95016 0.91850 1.42267 1.41177 1.40664 1.12732 1.20007 1.16712 1.19249 0.90683 0.91559 1.25822 0.98516 0.95154 1.04490 1.70886 1.43583 1.42327 1.01708 0.83233 0.75974 0.76020 0.73639 1.20982 1.22185 1.22172 1.22501 0.97308 0.83873 0.98770 0.92724 0.92865 0.92712 0.92072 0.91743 0.90400 0.91747 0.90730 0.91641 0.92847 0.91973 0.92186 0.91863 0.91982 0.90669 0.90712 0.79697 0.93288 0.91695 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.98 5.56 -26.73 -0.15 -1.13 16 3 C -0.10 -1.09 3.86 -26.74 -0.10 -1.19 16 4 C -0.10 -1.14 1.98 -91.78 -0.18 -1.32 16 5 H 0.09 0.86 7.26 -51.93 -0.38 0.49 16 6 C -0.11 -1.07 5.38 -26.73 -0.14 -1.22 16 7 C -0.16 -1.66 9.19 37.15 0.34 -1.32 16 8 C 0.53 8.12 6.05 -10.99 -0.07 8.05 16 9 O -0.54 -10.17 15.71 5.55 0.09 -10.08 16 10 N -0.61 -9.50 3.33 -170.52 -0.57 -10.07 16 11 C 0.10 1.34 6.31 -3.06 -0.02 1.32 16 12 C -0.15 -2.52 6.65 -24.90 -0.17 -2.69 16 13 C 0.18 3.46 3.69 -65.78 -0.24 3.22 16 14 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 15 N -0.73 -17.76 5.28 -51.35 -0.27 -18.03 16 16 C -0.34 -9.19 9.98 -15.06 -0.15 -9.34 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 18 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 19 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 20 Si 1.08 25.44 29.92 -169.99 -5.09 20.35 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.10 1.78 6.51 -2.53 -0.02 1.76 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 6.83 -51.93 -0.35 0.11 16 30 H 0.08 0.89 6.13 -51.93 -0.32 0.58 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.57 6.77 -51.93 -0.35 0.22 16 33 H 0.06 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.83 6.59 -51.93 -0.34 0.49 16 36 H 0.06 0.59 6.58 -51.93 -0.34 0.25 16 37 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.06 0.71 7.13 -51.93 -0.37 0.34 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.37 9.36 6.54 -40.82 -0.27 9.09 16 42 H 0.26 7.70 6.77 -40.82 -0.28 7.42 16 43 H 0.06 1.21 8.00 -51.92 -0.42 0.80 16 44 H 0.07 1.42 8.09 -51.93 -0.42 1.00 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -31.69 342.45 -8.16 -39.85 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.62 Total: 6.70 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.62 Total: -5.91 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.08 Total: -56.07 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.69 -8.16 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317065625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.712 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds