Wall clock time and date at job start Mon Mar 30 2020 00:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 C 1.52994 * 109.47421 * 184.48748 * 3 2 1 5 5 H 1.08999 * 109.46914 * 55.54680 * 4 3 2 6 6 C 1.53000 * 109.47171 * 295.54980 * 4 3 2 7 7 C 1.52993 * 109.47076 * 302.43419 * 6 4 3 8 8 C 1.50693 * 109.47386 * 175.54614 * 4 3 2 9 9 O 1.21285 * 120.00041 * 25.40402 * 8 4 3 10 10 N 1.34777 * 120.00344 * 205.39812 * 8 4 3 11 11 C 1.47022 * 125.64715 * 354.96315 * 10 8 4 12 12 C 1.54326 * 107.27364 * 178.96102 * 11 10 8 13 13 C 1.55153 * 102.93957 * 337.80470 * 12 11 10 14 14 H 1.09004 * 111.00622 * 277.38844 * 13 12 11 15 15 N 1.46501 * 111.00462 * 153.57710 * 13 12 11 16 16 C 1.36940 * 119.99800 * 86.45307 * 15 13 12 17 17 H 1.07992 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.38812 * 119.99772 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99915 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46869 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47262 * 300.00095 * 20 18 16 23 23 H 1.48498 * 109.47316 * 60.00300 * 20 18 16 24 24 C 1.47425 * 125.65207 * 174.97985 * 10 8 4 25 25 H 1.09000 * 109.47341 * 59.99821 * 1 2 3 26 26 H 1.09001 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47329 * 299.99737 * 1 2 3 28 28 H 1.09004 * 109.46422 * 240.00194 * 2 1 3 29 29 H 1.08998 * 109.47254 * 120.00716 * 2 1 3 30 30 H 1.09003 * 109.46978 * 64.48697 * 3 2 1 31 31 H 1.09004 * 109.47120 * 304.49387 * 3 2 1 32 32 H 1.09000 * 109.47126 * 62.43581 * 6 4 3 33 33 H 1.09005 * 109.47107 * 182.43537 * 6 4 3 34 34 H 1.08996 * 109.47341 * 185.12881 * 7 6 4 35 35 H 1.09002 * 109.47097 * 305.13155 * 7 6 4 36 36 H 1.09004 * 109.47348 * 65.12899 * 7 6 4 37 37 H 1.08998 * 109.88359 * 59.53992 * 11 10 8 38 38 H 1.09001 * 109.88235 * 298.37598 * 11 10 8 39 39 H 1.09001 * 110.71788 * 219.44707 * 12 11 10 40 40 H 1.08996 * 110.87167 * 96.23838 * 12 11 10 41 41 H 0.96999 * 120.00111 * 266.45700 * 15 13 12 42 42 H 0.96991 * 119.99856 * 0.02562 * 19 18 16 43 43 H 1.09011 * 110.36115 * 85.27340 * 24 10 8 44 44 H 1.08996 * 110.36936 * 322.95192 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5658 1.4440 -0.1129 5 1 3.8650 0.8852 -0.9996 6 6 4.1698 0.7886 1.1307 7 6 3.7006 1.5365 2.3802 8 6 4.0600 2.8633 -0.2230 9 8 3.3984 3.7727 0.2312 10 7 5.2372 3.1222 -0.8260 11 6 6.1844 2.1143 -1.3245 12 6 7.3703 2.8731 -1.9567 13 6 6.7594 4.2611 -2.2848 14 1 6.2188 4.2362 -3.2310 15 7 7.7930 5.2992 -2.3010 16 6 8.5044 5.5393 -3.4463 17 1 8.3031 4.9637 -4.3376 18 6 9.4833 6.5233 -3.4618 19 7 9.7282 7.2251 -2.3755 20 14 10.4542 6.8503 -5.0237 21 1 11.4319 7.9410 -4.7796 22 1 11.1786 5.6171 -5.4237 23 1 9.5243 7.2523 -6.1095 24 6 5.7884 4.4628 -1.0948 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7438 1.9325 0.9275 31 1 1.6124 1.9790 -0.8470 32 1 3.8469 -0.2510 1.1868 33 1 5.2575 0.8284 1.0705 34 1 4.2015 1.1279 3.2578 35 1 3.9434 2.5946 2.2829 36 1 2.6224 1.4198 2.4901 37 1 5.7006 1.4905 -2.0760 38 1 6.5375 1.4969 -0.4985 39 1 7.7061 2.3749 -2.8661 40 1 8.1914 2.9713 -1.2466 41 1 7.9735 5.8164 -1.5005 42 1 9.2248 7.0545 -1.5642 43 1 6.3284 4.8326 -0.2231 44 1 4.9907 5.1531 -1.3689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317065625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:32 Heat of formation + Delta-G solvation = -67.082664 kcal Electronic energy + Delta-G solvation = -21130.529059 eV Core-core repulsion = 18081.323641 eV Total energy + Delta-G solvation = -3049.205419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45021 -39.13788 -37.25781 -36.28034 -33.88021 -33.19980 -30.99355 -30.10281 -29.06759 -26.26134 -25.34391 -24.52332 -23.30271 -21.87778 -21.31392 -19.74383 -19.43859 -18.17107 -17.42319 -16.95643 -16.62069 -16.21730 -15.94205 -15.56125 -14.89995 -14.71693 -14.65482 -14.37781 -14.12756 -13.90260 -13.55437 -13.50231 -13.19855 -12.98258 -12.78730 -12.73079 -12.49313 -12.40982 -12.15141 -11.92570 -11.88198 -11.85085 -11.76437 -11.54286 -11.32159 -11.30299 -10.95106 -10.69922 -9.73369 -9.18515 -8.41093 -5.37316 1.56486 1.59653 1.69540 1.85235 1.88528 2.71615 3.32253 3.43541 3.57298 3.72897 3.77222 3.90044 3.91927 4.11162 4.19193 4.22869 4.27681 4.34353 4.37092 4.41004 4.58295 4.64251 4.69981 4.72779 4.79147 4.88123 4.91034 4.97003 5.06173 5.14051 5.14639 5.16907 5.17885 5.26351 5.32182 5.38764 5.41899 5.55443 5.58765 6.46012 6.50349 7.03084 7.09575 7.92605 8.04850 9.10378 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039963 B = 0.003474 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.471245 B = 8059.050605 C = 8173.735764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.102 4.102 4 C -0.095 4.095 5 H 0.114 0.886 6 C -0.108 4.108 7 C -0.157 4.157 8 C 0.525 3.475 9 O -0.587 6.587 10 N -0.615 5.615 11 C 0.108 3.892 12 C -0.143 4.143 13 C 0.170 3.830 14 H 0.059 0.941 15 N -0.742 5.742 16 C -0.330 4.330 17 H 0.073 0.927 18 C -0.104 4.104 19 N -0.976 5.976 20 Si 1.129 2.871 21 H -0.296 1.296 22 H -0.273 1.273 23 H -0.278 1.278 24 C 0.108 3.892 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.360 0.640 42 H 0.243 0.757 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 -20.421 4.555 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.116 4.116 5 H 0.132 0.868 6 C -0.146 4.146 7 C -0.215 4.215 8 C 0.316 3.684 9 O -0.467 6.467 10 N -0.349 5.349 11 C -0.014 4.014 12 C -0.184 4.184 13 C 0.060 3.940 14 H 0.077 0.923 15 N -0.384 5.384 16 C -0.461 4.461 17 H 0.091 0.909 18 C -0.295 4.295 19 N -0.624 5.624 20 Si 0.953 3.047 21 H -0.222 1.222 22 H -0.199 1.199 23 H -0.204 1.204 24 C -0.017 4.017 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.192 0.808 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.066 -19.167 3.937 23.528 hybrid contribution -0.999 0.132 1.115 1.503 sum -14.065 -19.035 5.052 24.201 Atomic orbital electron populations 1.21782 0.95726 1.02162 1.01507 1.21541 0.95980 0.94654 1.03266 1.21488 0.91996 0.98438 1.02081 1.21449 0.97643 0.90192 1.02328 0.86783 1.21513 1.00547 1.00807 0.91698 1.21862 1.02055 0.99245 0.98294 1.21218 0.78639 0.92767 0.75735 1.90660 1.57508 1.49272 1.49281 1.48601 1.19750 1.07824 1.58697 1.22235 0.88917 0.90662 0.99574 1.23178 0.97104 0.96861 1.01245 1.21383 0.88398 0.88918 0.95303 0.92340 1.42438 1.42175 1.42035 1.11716 1.20356 1.15968 1.18263 0.91533 0.90920 1.27251 1.00215 0.95535 1.06485 1.70996 1.44880 1.44242 1.02244 0.82619 0.74923 0.76292 0.70838 1.22207 1.19904 1.20442 1.22160 0.96331 0.85518 0.97646 0.93318 0.91444 0.93192 0.90766 0.90396 0.92078 0.93403 0.87490 0.91312 0.91439 0.95619 0.91770 0.88586 0.89225 0.89640 0.92124 0.80794 0.94613 0.93011 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.47 5.56 30.59 0.17 -1.30 16 3 C -0.10 -1.95 3.86 30.59 0.12 -1.84 16 4 C -0.10 -1.84 1.98 -11.54 -0.02 -1.86 16 5 H 0.11 1.68 7.26 -2.39 -0.02 1.66 16 6 C -0.11 -1.69 5.38 30.59 0.16 -1.53 16 7 C -0.16 -3.06 9.19 71.98 0.66 -2.40 16 8 C 0.53 15.62 6.05 87.65 0.53 16.15 16 9 O -0.59 -22.52 15.71 -3.05 -0.05 -22.57 16 10 N -0.62 -18.35 3.33 -811.79 -2.70 -21.05 16 11 C 0.11 2.49 6.31 86.73 0.55 3.04 16 12 C -0.14 -4.43 6.65 31.78 0.21 -4.22 16 13 C 0.17 6.64 3.69 46.38 0.17 6.81 16 14 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 15 N -0.74 -37.04 5.28 -316.38 -1.67 -38.71 16 16 C -0.33 -18.14 9.98 84.03 0.84 -17.30 16 17 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 18 C -0.10 -5.96 5.50 84.86 0.47 -5.49 16 19 N -0.98 -61.16 13.70 21.65 0.30 -60.86 16 20 Si 1.13 51.11 29.92 68.60 2.05 53.16 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.11 3.98 6.51 86.85 0.57 4.55 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.08 0.80 6.83 -2.39 -0.02 0.78 16 30 H 0.06 1.37 6.13 -2.39 -0.01 1.36 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.11 1.07 6.77 -2.39 -0.02 1.05 16 33 H 0.07 1.06 7.13 -2.38 -0.02 1.05 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.02 0.68 6.59 -2.39 -0.02 0.66 16 36 H 0.06 1.17 6.58 -2.39 -0.02 1.16 16 37 H 0.10 1.68 7.69 -2.39 -0.02 1.66 16 38 H 0.09 1.66 7.13 -2.39 -0.02 1.65 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.36 19.06 6.54 -92.71 -0.61 18.45 16 42 H 0.24 15.27 6.77 -92.71 -0.63 14.64 16 43 H 0.05 2.03 8.00 -2.38 -0.02 2.01 16 44 H 0.06 2.25 8.09 -2.39 -0.02 2.24 16 Total: -1.00 -71.21 342.45 3.57 -67.64 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.50 Total: 29.02 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.14 Total: -6.63 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.07 Total: -120.62 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -71.21 3.57 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317065625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.556 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds