Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46599 * 2 1 4 4 C 1.53002 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46870 * 55.00123 * 4 3 2 6 6 C 1.53001 * 109.47472 * 295.00411 * 4 3 2 7 7 C 1.52998 * 109.47394 * 175.00017 * 4 3 2 8 8 C 1.50696 * 109.47359 * 185.00062 * 7 4 3 9 9 O 1.21283 * 120.00006 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00100 * 180.02562 * 8 7 4 11 11 C 1.46509 * 119.99994 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.84853 * 336.20071 * 11 10 8 13 13 C 1.53787 * 113.61078 * 107.50323 * 11 10 8 14 14 C 1.53781 * 87.07895 * 139.98016 * 13 11 10 15 15 H 1.08998 * 113.69259 * 220.00479 * 14 13 11 16 16 N 1.46500 * 113.61353 * 89.11373 * 14 13 11 17 17 C 1.36943 * 119.99878 * 107.50084 * 16 14 13 18 18 H 1.07996 * 119.99698 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99967 * 21 19 17 23 23 H 1.48503 * 109.47261 * 300.00148 * 21 19 17 24 24 H 1.48500 * 109.47454 * 180.02562 * 21 19 17 25 25 C 1.53782 * 113.61292 * 205.00010 * 11 10 8 26 26 H 1.09006 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47218 * 299.99310 * 1 2 3 28 28 H 1.08997 * 109.47589 * 60.00017 * 1 2 3 29 29 H 1.09002 * 109.46791 * 240.00787 * 2 1 3 30 30 H 1.08999 * 109.47376 * 120.00471 * 2 1 3 31 31 H 1.09006 * 109.47379 * 60.00868 * 3 2 1 32 32 H 1.08999 * 109.47641 * 300.00309 * 3 2 1 33 33 H 1.09000 * 109.47036 * 300.00167 * 6 4 3 34 34 H 1.09003 * 109.46885 * 59.99815 * 6 4 3 35 35 H 1.08996 * 109.47500 * 179.97438 * 6 4 3 36 36 H 1.09005 * 109.47029 * 65.00447 * 7 4 3 37 37 H 1.09001 * 109.47383 * 305.00283 * 7 4 3 38 38 H 0.96998 * 120.00510 * 0.02562 * 10 8 7 39 39 H 1.09002 * 113.61299 * 25.43588 * 13 11 10 40 40 H 1.08996 * 113.61770 * 254.52701 * 13 11 10 41 41 H 0.97000 * 120.00415 * 287.50032 * 16 14 13 42 42 H 0.97001 * 119.99542 * 359.97438 * 20 19 17 43 43 H 1.08995 * 113.61182 * 105.47364 * 25 11 10 44 44 H 1.08999 * 113.61318 * 334.56803 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0794 0.8331 1.3082 7 6 4.0799 2.8796 -0.1251 8 6 5.5818 2.8707 -0.2480 9 8 6.1849 1.8185 -0.2366 10 7 6.2548 4.0319 -0.3705 11 6 7.7150 4.0231 -0.4905 12 1 8.1689 3.1263 -0.0689 13 6 8.2190 4.3655 -1.9025 14 6 9.3296 5.1833 -1.2225 15 1 9.5481 6.1265 -1.7231 16 7 10.5344 4.4042 -0.9262 17 6 11.6734 4.5986 -1.6611 18 1 11.6837 5.3265 -2.4588 19 6 12.8151 3.8608 -1.3800 20 7 12.8028 2.9739 -0.4075 21 14 14.3691 4.1264 -2.3820 22 1 14.8112 5.5375 -2.2452 23 1 14.0934 3.8305 -3.8109 24 1 15.4380 3.2221 -1.8871 25 6 8.3794 5.3285 -0.0221 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7157 1.4226 2.1499 34 1 3.7161 -0.1907 1.3977 35 1 5.1694 0.8328 1.3085 36 1 3.7912 3.4463 0.7602 37 1 3.6456 3.3431 -1.0109 38 1 5.7726 4.8734 -0.3792 39 1 7.5214 4.9721 -2.4800 40 1 8.5888 3.5020 -2.4555 41 1 10.5253 3.7506 -0.2095 42 1 11.9960 2.8363 0.1130 43 1 8.8786 5.2424 0.9430 44 1 7.7256 6.1984 -0.0856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317073145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -35.932887 kcal Electronic energy + Delta-G solvation = -20361.104539 eV Core-core repulsion = 17313.249876 eV Total energy + Delta-G solvation = -3047.854663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02738 -38.37367 -36.73477 -34.22615 -32.97238 -32.68583 -29.55129 -28.01502 -26.78384 -25.18314 -24.11400 -23.04865 -22.05743 -20.55294 -19.95737 -18.84561 -17.50860 -16.91623 -16.05406 -15.77328 -15.31087 -14.97346 -14.43739 -14.15504 -13.88028 -13.67979 -13.55523 -13.40672 -12.90033 -12.49055 -12.38009 -12.13768 -11.98778 -11.86439 -11.71116 -11.47171 -11.14687 -10.88078 -10.78362 -10.75957 -10.65864 -10.61102 -10.29302 -9.99737 -9.93026 -9.50358 -9.17289 -8.91998 -8.69921 -7.07537 -6.11852 -3.12918 2.77091 3.34285 3.51872 3.55760 3.73339 4.50121 4.60487 4.65220 4.65799 4.90732 4.92415 5.00420 5.09744 5.17560 5.28770 5.31093 5.33807 5.45650 5.47379 5.48825 5.56632 5.64803 5.70984 5.78834 5.82707 5.83613 5.94383 5.96278 6.02165 6.06955 6.15376 6.26740 6.30036 6.43063 6.56754 6.64238 6.73134 6.96619 7.67512 7.80709 8.40282 8.73459 9.19675 10.05881 10.19590 11.36040 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.002913 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.265642 B = 9608.246363 C = 9927.457074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.138 4.138 8 C 0.507 3.493 9 O -0.536 6.536 10 N -0.721 5.721 11 C 0.125 3.875 12 H 0.110 0.890 13 C -0.183 4.183 14 C 0.177 3.823 15 H 0.069 0.931 16 N -0.717 5.717 17 C -0.337 4.337 18 H 0.067 0.933 19 C -0.044 4.044 20 N -0.941 5.941 21 Si 1.082 2.918 22 H -0.295 1.295 23 H -0.295 1.295 24 H -0.285 1.285 25 C -0.165 4.165 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.395 0.605 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.369 0.631 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.023 1.203 1.568 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.178 4.178 8 C 0.293 3.707 9 O -0.412 6.412 10 N -0.371 5.371 11 C 0.021 3.979 12 H 0.128 0.872 13 C -0.226 4.226 14 C 0.064 3.936 15 H 0.087 0.913 16 N -0.357 5.357 17 C -0.467 4.467 18 H 0.085 0.915 19 C -0.242 4.242 20 N -0.585 5.585 21 Si 0.912 3.088 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.210 1.210 25 C -0.205 4.205 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.229 0.771 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.203 0.797 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.921 0.094 1.217 21.955 hybrid contribution -2.015 0.799 0.340 2.194 sum -23.937 0.893 1.556 24.004 Atomic orbital electron populations 1.21782 0.96104 1.01470 1.01618 1.21578 0.95484 0.97016 1.02379 1.21680 0.94786 0.96950 1.01803 1.20902 0.94289 0.94342 0.99989 0.90381 1.21996 1.03327 1.00098 0.95726 1.21775 0.92500 0.99661 1.03835 1.20722 0.89992 0.84024 0.75914 1.90693 1.70365 1.30828 1.49359 1.46168 1.08177 1.08386 1.74360 1.22584 0.77969 0.99333 0.98003 0.87214 1.24295 1.00067 1.02029 0.96178 1.20840 0.85600 0.94262 0.92939 0.91318 1.42201 1.08056 1.45266 1.40142 1.20065 0.90983 1.21603 1.14088 0.91520 1.25835 1.01194 0.96448 1.00684 1.70880 1.30374 1.35542 1.21729 0.83223 0.75487 0.75448 0.74617 1.22196 1.22203 1.20998 1.23906 0.99246 0.96359 1.01009 0.92906 0.92875 0.92885 0.91996 0.91645 0.92031 0.92094 0.93551 0.92798 0.90574 0.89203 0.89214 0.77105 0.91194 0.91186 0.79741 0.93299 0.91100 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.98 5.69 -26.73 -0.15 -1.13 16 3 C -0.11 -0.89 4.68 -26.73 -0.13 -1.01 16 4 C -0.08 -0.77 2.04 -90.62 -0.18 -0.95 16 5 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 6 C -0.15 -1.71 8.69 37.16 0.32 -1.38 16 7 C -0.14 -1.31 5.17 -27.89 -0.14 -1.45 16 8 C 0.51 7.06 7.55 -10.99 -0.08 6.98 16 9 O -0.54 -9.88 13.57 5.55 0.08 -9.80 16 10 N -0.72 -9.36 5.35 -53.01 -0.28 -9.64 16 11 C 0.13 2.08 4.12 -67.11 -0.28 1.81 16 12 H 0.11 2.20 7.46 -51.93 -0.39 1.82 16 13 C -0.18 -3.29 7.68 -25.92 -0.20 -3.49 16 14 C 0.18 3.52 4.56 -67.12 -0.31 3.21 16 15 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 16 N -0.72 -18.19 5.31 -52.64 -0.28 -18.46 16 17 C -0.34 -9.55 9.97 -15.06 -0.15 -9.70 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 19 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 20 N -0.94 -29.58 13.70 55.49 0.76 -28.82 16 21 Si 1.08 26.14 29.92 -169.99 -5.09 21.05 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 C -0.17 -2.63 7.58 -25.92 -0.20 -2.83 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.40 3.77 8.73 -40.82 -0.36 3.41 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.37 9.74 6.73 -40.82 -0.27 9.47 16 42 H 0.26 7.96 6.77 -40.82 -0.28 7.68 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -33.26 350.78 -8.57 -41.83 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.82 Total: 10.52 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.22 Total: -11.96 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.20 Total: -56.93 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.26 -8.57 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317073145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.897 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds