Wall clock time and date at job start Mon Mar 30 2020 00:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46599 * 2 1 4 4 C 1.53002 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46870 * 55.00123 * 4 3 2 6 6 C 1.53001 * 109.47472 * 295.00411 * 4 3 2 7 7 C 1.52998 * 109.47394 * 175.00017 * 4 3 2 8 8 C 1.50696 * 109.47359 * 185.00062 * 7 4 3 9 9 O 1.21283 * 120.00006 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00100 * 180.02562 * 8 7 4 11 11 C 1.46509 * 119.99994 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.84853 * 336.20071 * 11 10 8 13 13 C 1.53787 * 113.61078 * 107.50323 * 11 10 8 14 14 C 1.53781 * 87.07895 * 139.98016 * 13 11 10 15 15 H 1.08998 * 113.69259 * 220.00479 * 14 13 11 16 16 N 1.46500 * 113.61353 * 89.11373 * 14 13 11 17 17 C 1.36943 * 119.99878 * 107.50084 * 16 14 13 18 18 H 1.07996 * 119.99698 * 0.02562 * 17 16 14 19 19 C 1.38809 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00319 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00011 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 59.99967 * 21 19 17 23 23 H 1.48503 * 109.47261 * 300.00148 * 21 19 17 24 24 H 1.48500 * 109.47454 * 180.02562 * 21 19 17 25 25 C 1.53782 * 113.61292 * 205.00010 * 11 10 8 26 26 H 1.09006 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47218 * 299.99310 * 1 2 3 28 28 H 1.08997 * 109.47589 * 60.00017 * 1 2 3 29 29 H 1.09002 * 109.46791 * 240.00787 * 2 1 3 30 30 H 1.08999 * 109.47376 * 120.00471 * 2 1 3 31 31 H 1.09006 * 109.47379 * 60.00868 * 3 2 1 32 32 H 1.08999 * 109.47641 * 300.00309 * 3 2 1 33 33 H 1.09000 * 109.47036 * 300.00167 * 6 4 3 34 34 H 1.09003 * 109.46885 * 59.99815 * 6 4 3 35 35 H 1.08996 * 109.47500 * 179.97438 * 6 4 3 36 36 H 1.09005 * 109.47029 * 65.00447 * 7 4 3 37 37 H 1.09001 * 109.47383 * 305.00283 * 7 4 3 38 38 H 0.96998 * 120.00510 * 0.02562 * 10 8 7 39 39 H 1.09002 * 113.61299 * 25.43588 * 13 11 10 40 40 H 1.08996 * 113.61770 * 254.52701 * 13 11 10 41 41 H 0.97000 * 120.00415 * 287.50032 * 16 14 13 42 42 H 0.97001 * 119.99542 * 359.97438 * 20 19 17 43 43 H 1.08995 * 113.61182 * 105.47364 * 25 11 10 44 44 H 1.08999 * 113.61318 * 334.56803 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0794 0.8331 1.3082 7 6 4.0799 2.8796 -0.1251 8 6 5.5818 2.8707 -0.2480 9 8 6.1849 1.8185 -0.2366 10 7 6.2548 4.0319 -0.3705 11 6 7.7150 4.0231 -0.4905 12 1 8.1689 3.1263 -0.0689 13 6 8.2190 4.3655 -1.9025 14 6 9.3296 5.1833 -1.2225 15 1 9.5481 6.1265 -1.7231 16 7 10.5344 4.4042 -0.9262 17 6 11.6734 4.5986 -1.6611 18 1 11.6837 5.3265 -2.4588 19 6 12.8151 3.8608 -1.3800 20 7 12.8028 2.9739 -0.4075 21 14 14.3691 4.1264 -2.3820 22 1 14.8112 5.5375 -2.2452 23 1 14.0934 3.8305 -3.8109 24 1 15.4380 3.2221 -1.8871 25 6 8.3794 5.3285 -0.0221 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6765 1.9564 -0.8899 33 1 3.7157 1.4226 2.1499 34 1 3.7161 -0.1907 1.3977 35 1 5.1694 0.8328 1.3085 36 1 3.7912 3.4463 0.7602 37 1 3.6456 3.3431 -1.0109 38 1 5.7726 4.8734 -0.3792 39 1 7.5214 4.9721 -2.4800 40 1 8.5888 3.5020 -2.4555 41 1 10.5253 3.7506 -0.2095 42 1 11.9960 2.8363 0.1130 43 1 8.8786 5.2424 0.9430 44 1 7.7256 6.1984 -0.0856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317073145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:26 Heat of formation + Delta-G solvation = -58.132920 kcal Electronic energy + Delta-G solvation = -20362.067205 eV Core-core repulsion = 17313.249876 eV Total energy + Delta-G solvation = -3048.817329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23984 -39.72389 -37.58523 -36.03845 -34.36766 -33.52814 -31.47110 -28.97230 -27.47275 -26.61884 -25.95568 -24.67577 -22.91604 -21.53064 -20.88213 -20.28717 -19.53742 -17.99817 -17.42565 -16.77396 -16.62160 -16.15025 -15.90104 -15.43385 -15.39098 -14.88874 -14.53144 -14.49215 -14.20061 -13.74796 -13.45001 -13.20729 -13.13865 -12.84785 -12.70284 -12.60948 -12.54802 -12.33559 -11.89568 -11.86276 -11.81850 -11.67128 -11.51062 -11.47908 -11.29108 -11.26484 -10.91614 -10.60869 -9.97273 -9.16649 -8.43383 -5.38042 1.56870 1.67561 1.68537 1.83781 2.26589 2.69644 3.34933 3.53206 3.66557 3.76206 3.78294 3.80172 3.97123 4.16442 4.19434 4.26519 4.28695 4.43113 4.56668 4.68705 4.72052 4.73265 4.74429 4.80481 4.89767 4.92564 4.97409 5.04433 5.05712 5.13924 5.18445 5.23730 5.25254 5.32281 5.43460 5.52557 5.56644 5.58861 5.67409 6.43531 6.64981 7.04669 7.36829 7.94030 8.06327 9.07874 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039692 B = 0.002913 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.265642 B = 9608.246363 C = 9927.457074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.105 4.105 4 C -0.076 4.076 5 H 0.051 0.949 6 C -0.152 4.152 7 C -0.126 4.126 8 C 0.499 3.501 9 O -0.590 6.590 10 N -0.705 5.705 11 C 0.132 3.868 12 H 0.065 0.935 13 C -0.170 4.170 14 C 0.153 3.847 15 H 0.075 0.925 16 N -0.736 5.736 17 C -0.333 4.333 18 H 0.073 0.927 19 C -0.109 4.109 20 N -0.976 5.976 21 Si 1.131 2.869 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.295 1.295 25 C -0.137 4.137 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.418 0.582 39 H 0.107 0.893 40 H 0.029 0.971 41 H 0.357 0.643 42 H 0.241 0.759 43 H 0.058 0.942 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.665 3.732 1.002 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.143 4.143 4 C -0.095 4.095 5 H 0.069 0.931 6 C -0.209 4.209 7 C -0.166 4.166 8 C 0.288 3.712 9 O -0.470 6.470 10 N -0.357 5.357 11 C 0.026 3.974 12 H 0.083 0.917 13 C -0.212 4.212 14 C 0.043 3.957 15 H 0.093 0.907 16 N -0.375 5.375 17 C -0.464 4.464 18 H 0.091 0.909 19 C -0.300 4.300 20 N -0.624 5.624 21 Si 0.955 3.045 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.221 1.221 25 C -0.177 4.177 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.256 0.744 39 H 0.126 0.874 40 H 0.048 0.952 41 H 0.189 0.811 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.654 2.701 0.635 24.809 hybrid contribution -1.287 0.011 0.501 1.381 sum -25.940 2.713 1.136 26.107 Atomic orbital electron populations 1.21758 0.94959 1.01793 1.02199 1.21596 0.96479 0.97102 1.01634 1.21614 0.92474 0.97080 1.03119 1.20884 0.96090 0.94420 0.98137 0.93092 1.21949 1.00836 1.00922 0.97227 1.21817 0.88472 0.99747 1.06552 1.21646 0.91944 0.83171 0.74458 1.90694 1.71822 1.32888 1.51596 1.45933 1.06437 1.09534 1.73776 1.22085 0.80294 0.98107 0.96881 0.91684 1.24163 0.99856 1.00530 0.96664 1.21201 0.84799 0.93992 0.95752 0.90657 1.42418 1.09330 1.45989 1.39795 1.20462 0.91863 1.20489 1.13617 0.90862 1.27349 1.04858 0.96391 1.01398 1.70999 1.29915 1.37881 1.23617 0.82600 0.71733 0.76254 0.73906 1.19760 1.20430 1.22102 1.23737 0.98049 0.97469 0.98429 0.92821 0.92185 0.92348 0.93014 0.92290 0.90568 0.90754 0.91895 0.92598 0.94314 0.86216 0.86211 0.74367 0.87439 0.95169 0.81077 0.94835 0.92294 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.13 -1.82 5.69 30.59 0.17 -1.65 16 3 C -0.11 -1.35 4.68 30.59 0.14 -1.20 16 4 C -0.08 -1.44 2.04 -10.79 -0.02 -1.46 16 5 H 0.05 1.23 7.95 -2.38 -0.02 1.22 16 6 C -0.15 -3.34 8.69 71.98 0.63 -2.72 16 7 C -0.13 -2.02 5.17 29.85 0.15 -1.86 16 8 C 0.50 13.40 7.55 87.66 0.66 14.06 16 9 O -0.59 -22.69 13.57 -3.04 -0.04 -22.73 16 10 N -0.70 -16.72 5.35 -440.02 -2.36 -19.08 16 11 C 0.13 4.34 4.12 45.52 0.19 4.53 16 12 H 0.06 2.77 7.46 -2.39 -0.02 2.76 16 13 C -0.17 -5.97 7.68 31.12 0.24 -5.74 16 14 C 0.15 5.99 4.56 45.52 0.21 6.20 16 15 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 16 N -0.74 -38.33 5.31 -320.44 -1.70 -40.03 16 17 C -0.33 -19.15 9.97 84.03 0.84 -18.31 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.11 -6.54 5.50 84.86 0.47 -6.08 16 20 N -0.98 -63.66 13.70 21.65 0.30 -63.36 16 21 Si 1.13 53.04 29.92 68.60 2.05 55.09 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 25 C -0.14 -4.10 7.58 31.12 0.24 -3.87 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.89 6.56 -2.39 -0.02 0.87 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.16 6.56 -2.39 -0.02 1.14 16 35 H 0.04 1.15 5.95 -2.39 -0.01 1.14 16 36 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.42 6.11 8.73 -92.71 -0.81 5.30 16 39 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.36 19.91 6.73 -92.71 -0.62 19.29 16 42 H 0.24 15.85 6.77 -92.71 -0.63 15.22 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.13 2.63 8.12 -2.39 -0.02 2.61 16 Total: -1.00 -77.44 350.78 2.56 -74.88 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.32 Total: 34.26 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 4.62 Total: -19.04 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -3.76 Total: -122.47 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 2.05 Total: 55.09 kcal Total: -77.44 2.56 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317073145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.748 kcal (2) G-P(sol) polarization free energy of solvation -77.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds