Wall clock time and date at job start Mon Mar 30 2020 00:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 C 1.53002 * 109.47209 * 119.99895 * 2 1 3 5 5 C 1.50700 * 109.46911 * 64.99681 * 4 2 1 6 6 O 1.21270 * 120.00122 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99614 * 180.02562 * 5 4 2 8 8 C 1.47015 * 125.65059 * 0.02562 * 7 5 4 9 9 C 1.54327 * 107.27333 * 178.89631 * 8 7 5 10 10 C 1.55158 * 102.93925 * 337.80986 * 9 8 7 11 11 H 1.08998 * 111.00488 * 277.38897 * 10 9 8 12 12 C 1.53000 * 111.00282 * 153.57462 * 10 9 8 13 13 N 1.46500 * 109.47060 * 66.45411 * 12 10 9 14 14 C 1.46507 * 120.00146 * 89.99771 * 13 12 10 15 15 C 1.36943 * 120.00248 * 269.99824 * 13 12 10 16 16 H 1.08004 * 119.99267 * 22.73931 * 15 13 12 17 17 C 1.38807 * 120.00044 * 202.73967 * 15 13 12 18 18 N 1.31623 * 120.00210 * 13.37237 * 17 15 13 19 19 Si 1.86800 * 119.99563 * 193.36734 * 17 15 13 20 20 H 1.48498 * 109.47047 * 60.00670 * 19 17 15 21 21 H 1.48507 * 109.46812 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47237 * 300.00017 * 19 17 15 23 23 C 1.47430 * 125.64690 * 179.97438 * 7 5 4 24 24 H 1.09001 * 109.47143 * 300.00049 * 1 2 3 25 25 H 1.09002 * 109.46830 * 60.00095 * 1 2 3 26 26 H 1.08993 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47143 * 239.99951 * 2 1 3 28 28 H 1.09003 * 109.47551 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47046 * 299.99773 * 3 2 1 30 30 H 1.08996 * 109.47491 * 59.99332 * 3 2 1 31 31 H 1.09004 * 109.46906 * 305.00191 * 4 2 1 32 32 H 1.09001 * 109.47390 * 184.99986 * 4 2 1 33 33 H 1.09004 * 109.88195 * 59.47982 * 8 7 5 34 34 H 1.09000 * 110.01689 * 298.38530 * 8 7 5 35 35 H 1.09002 * 110.72293 * 219.44695 * 9 8 7 36 36 H 1.08992 * 110.71863 * 96.17042 * 9 8 7 37 37 H 1.08996 * 109.47071 * 306.45456 * 12 10 9 38 38 H 1.08998 * 109.46995 * 186.44938 * 12 10 9 39 39 H 1.09001 * 109.47093 * 95.13037 * 14 13 12 40 40 H 1.08998 * 109.46968 * 215.12712 * 14 13 12 41 41 H 1.08995 * 109.46685 * 335.13425 * 14 13 12 42 42 H 0.96997 * 120.00000 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.36648 * 85.33413 * 23 7 5 44 44 H 1.09001 * 110.36485 * 323.01437 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1889 6 8 1.0116 -2.5903 0.2401 7 7 1.9844 -3.0084 2.1896 8 6 2.7427 -2.6375 3.3933 9 6 2.8713 -3.9059 4.2628 10 6 1.6928 -4.7863 3.7695 11 1 0.7604 -4.4990 4.2555 12 6 1.9879 -6.2713 3.9901 13 7 2.0424 -6.5502 5.4272 14 6 0.8252 -6.9370 6.1451 15 6 3.2310 -6.4493 6.0998 16 1 4.0258 -5.8354 5.7024 17 6 3.4143 -7.1361 7.2920 18 7 2.5676 -8.0801 7.6447 19 14 4.8629 -6.7207 8.3958 20 1 4.7766 -5.2977 8.8112 21 1 4.8339 -7.5907 9.5990 22 1 6.1301 -6.9441 7.6546 23 6 1.6606 -4.4450 2.2589 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.2085 -1.8632 3.9439 34 1 3.7329 -2.2774 3.1142 35 1 2.7554 -3.6629 5.3191 36 1 3.8250 -4.4019 4.0825 37 1 2.9456 -6.5230 3.5346 38 1 1.1997 -6.8700 3.5335 39 1 0.7672 -8.0239 6.2027 40 1 0.8495 -6.5206 7.1521 41 1 -0.0466 -6.5543 5.6145 42 1 2.6959 -8.5602 8.4776 43 1 2.4084 -5.0288 1.7221 44 1 0.6677 -4.6303 1.8492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317827812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:21 Heat of formation + Delta-G solvation = -30.132540 kcal Electronic energy + Delta-G solvation = -21103.026480 eV Core-core repulsion = 18055.423339 eV Total energy + Delta-G solvation = -3047.603141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06222 -37.86499 -35.64957 -35.25058 -32.29353 -30.57374 -29.21104 -28.22207 -27.22912 -25.93517 -25.22643 -22.91752 -21.44574 -20.48013 -19.63897 -18.86020 -17.04928 -16.83964 -16.13229 -15.36448 -15.20363 -14.76407 -14.07118 -13.98809 -13.62521 -13.42728 -13.20709 -12.94939 -12.83664 -12.44146 -12.24498 -12.12007 -11.95172 -11.78630 -11.32726 -11.24131 -11.03751 -11.00697 -10.82893 -10.80126 -10.66611 -10.41338 -10.31148 -10.14427 -9.85132 -9.77352 -9.61253 -8.55634 -8.47270 -6.73687 -5.72168 -3.18758 2.71924 3.11568 3.36897 3.42604 3.43348 4.46602 4.52039 4.63643 4.75576 4.95630 4.97861 5.16271 5.23611 5.35836 5.41072 5.43242 5.48067 5.48816 5.54898 5.61845 5.74245 5.78308 5.82817 5.87897 5.98059 5.99930 6.17404 6.20842 6.28277 6.32902 6.37498 6.53989 6.58226 6.70914 6.76799 6.92766 7.37366 7.66575 7.73421 7.80373 8.26879 8.39846 9.23656 9.87706 10.37220 11.32679 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.003738 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.229811 B = 7488.226105 C = 8019.423793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.133 4.133 5 C 0.525 3.475 6 O -0.546 6.546 7 N -0.617 5.617 8 C 0.096 3.904 9 C -0.110 4.110 10 C -0.117 4.117 11 H 0.074 0.926 12 C 0.162 3.838 13 N -0.600 5.600 14 C 0.162 3.838 15 C -0.254 4.254 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.908 5.908 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.109 3.891 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.040 0.960 41 H -0.003 1.003 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 15.171 -10.722 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.173 4.173 5 C 0.314 3.686 6 O -0.425 6.425 7 N -0.351 5.351 8 C -0.026 4.026 9 C -0.148 4.148 10 C -0.139 4.139 11 H 0.092 0.908 12 C 0.034 3.966 13 N -0.322 5.322 14 C 0.017 3.983 15 C -0.383 4.383 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.553 5.553 19 Si 0.732 3.268 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.210 1.210 23 C -0.014 4.014 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.355 14.869 -11.105 18.608 hybrid contribution 0.860 0.226 0.887 1.256 sum -0.495 15.095 -10.217 18.234 Atomic orbital electron populations 1.21957 0.94774 1.03467 1.00839 1.20864 0.96658 0.95196 0.97265 1.21862 1.00834 0.95898 1.01882 1.21754 1.02666 0.92172 1.00683 1.20355 0.79197 0.87834 0.81239 1.90644 1.40740 1.78048 1.33022 1.48667 1.55121 1.10454 1.20816 1.22198 0.95250 0.99266 0.85930 1.22566 0.99525 0.93158 0.99583 1.23155 0.98643 1.00105 0.91998 0.90758 1.20615 0.99093 0.90296 0.86620 1.43851 1.05933 1.80208 1.02215 1.20789 0.84390 0.98480 0.94600 1.19162 0.92673 1.22552 1.03920 0.91230 1.25026 0.98120 0.96511 1.00090 1.70063 1.38010 1.23394 1.23796 0.86382 0.82408 0.77673 0.80350 1.21119 1.21722 1.20976 1.22328 1.00863 0.80189 0.97976 0.93437 0.93083 0.90626 0.90512 0.92726 0.92478 0.92669 0.89126 0.89168 0.91891 0.91889 0.89472 0.90578 0.93218 0.94324 0.95134 0.94170 0.98448 0.93748 0.91619 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.93 37.16 0.33 -1.30 16 2 C -0.08 -0.81 2.57 -90.62 -0.23 -1.04 16 3 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 4 C -0.13 -1.36 4.37 -27.88 -0.12 -1.49 16 5 C 0.52 7.40 7.57 -10.98 -0.08 7.32 16 6 O -0.55 -9.39 14.22 5.57 0.08 -9.31 16 7 N -0.62 -8.68 3.33 -170.52 -0.57 -9.25 16 8 C 0.10 1.20 6.49 -3.07 -0.02 1.18 16 9 C -0.11 -1.69 5.13 -24.89 -0.13 -1.81 16 10 C -0.12 -1.91 3.29 -88.47 -0.29 -2.20 16 11 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.16 3.14 5.18 -4.04 -0.02 3.12 16 13 N -0.60 -14.37 2.87 -181.12 -0.52 -14.89 16 14 C 0.16 3.91 8.98 59.85 0.54 4.44 16 15 C -0.25 -6.58 8.98 -15.06 -0.14 -6.72 16 16 H 0.07 1.72 6.69 -52.48 -0.35 1.37 16 17 C 0.00 0.02 5.09 -17.43 -0.09 -0.07 16 18 N -0.91 -26.07 10.72 55.49 0.59 -25.48 16 19 Si 0.90 21.22 29.57 -169.99 -5.03 16.19 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.11 1.65 6.38 -2.53 -0.02 1.63 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 27 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.22 7.39 -51.93 -0.38 0.83 16 37 H 0.05 0.97 8.00 -51.93 -0.42 0.55 16 38 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 40 H 0.04 1.03 7.33 -51.93 -0.38 0.65 16 41 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 42 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 44 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -29.92 344.90 -8.26 -38.18 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -8.09 Total: -2.93 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 0.07 Total: 2.28 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.49 Total: -49.61 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.92 -8.26 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317827812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.050 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds